Basic Information

Insect: Pachypsylla venusta
Gene Symbol: -
Assembly: GCA_012654025.1
Location: CM022878.1:2243376-2249092[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.00061 0.057 14.1 5.6 1 23 41 64 41 65 0.96

2 26 0.075 7 7.5 3.5 1 23 73 96 73 97 0.95

3 26 0.17 16 6.4 0.6 6 23 192 210 189 210 0.92

4 26 0.048 4.4 8.1 1.7 3 19 229 245 227 250 0.92

5 26 0.61 57 4.6 3.9 1 23 257 280 257 280 0.96

6 26 0.00038 0.035 14.7 0.8 1 23 307 330 307 330 0.95

7 26 0.069 6.4 7.6 3.3 1 23 349 372 349 372 0.94

8 26 0.045 4.2 8.2 0.2 2 23 381 403 380 403 0.94

9 26 0.58 54 4.7 0.3 1 23 408 431 408 431 0.95

10 26 0.014 1.4 9.8 2.4 1 23 459 481 459 481 0.99

11 26 0.00012 0.011 16.4 0.5 2 23 488 510 487 510 0.92

12 26 1.4e-06 0.00013 22.4 0.2 3 23 518 538 516 538 0.98

13 26 0.00017 0.015 15.9 0.3 1 23 544 566 544 566 0.98

14 26 5.1e-05 0.0047 17.5 2.3 1 23 572 594 572 594 0.98

15 26 0.00013 0.012 16.2 2.4 1 23 603 625 603 625 0.96

16 26 0.00016 0.015 16.0 0.9 1 23 631 653 631 653 0.98

17 26 0.63 59 4.6 2.0 2 20 682 700 681 701 0.93

18 26 0.015 1.4 9.8 2.1 2 23 931 952 931 952 0.91

19 26 0.03 2.8 8.8 2.9 2 23 983 1004 982 1004 0.94

20 26 2.6 2.5e+02 2.6 3.2 1 23 1047 1069 1047 1069 0.95

21 26 0.0038 0.36 11.6 1.3 2 23 1076 1098 1075 1098 0.96

22 26 0.0015 0.14 12.8 4.3 1 23 1104 1126 1104 1126 0.98

23 26 0.00022 0.02 15.5 2.5 1 23 1132 1154 1132 1154 0.97

24 26 1.2e-05 0.0012 19.4 5.3 1 23 1160 1182 1160 1182 0.99

25 26 3e-05 0.0028 18.2 1.3 1 23 1193 1215 1193 1215 0.97

26 26 1.4 1.3e+02 3.6 2.5 1 21 1284 1304 1284 1307 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.00061	0.057	14.1	5.6	1	23	41	64	41	65	0.96
2	26	0.075	7	7.5	3.5	1	23	73	96	73	97	0.95
3	26	0.17	16	6.4	0.6	6	23	192	210	189	210	0.92
4	26	0.048	4.4	8.1	1.7	3	19	229	245	227	250	0.92
5	26	0.61	57	4.6	3.9	1	23	257	280	257	280	0.96
6	26	0.00038	0.035	14.7	0.8	1	23	307	330	307	330	0.95
7	26	0.069	6.4	7.6	3.3	1	23	349	372	349	372	0.94
8	26	0.045	4.2	8.2	0.2	2	23	381	403	380	403	0.94
9	26	0.58	54	4.7	0.3	1	23	408	431	408	431	0.95
10	26	0.014	1.4	9.8	2.4	1	23	459	481	459	481	0.99
11	26	0.00012	0.011	16.4	0.5	2	23	488	510	487	510	0.92
12	26	1.4e-06	0.00013	22.4	0.2	3	23	518	538	516	538	0.98
13	26	0.00017	0.015	15.9	0.3	1	23	544	566	544	566	0.98
14	26	5.1e-05	0.0047	17.5	2.3	1	23	572	594	572	594	0.98
15	26	0.00013	0.012	16.2	2.4	1	23	603	625	603	625	0.96
16	26	0.00016	0.015	16.0	0.9	1	23	631	653	631	653	0.98
17	26	0.63	59	4.6	2.0	2	20	682	700	681	701	0.93
18	26	0.015	1.4	9.8	2.1	2	23	931	952	931	952	0.91
19	26	0.03	2.8	8.8	2.9	2	23	983	1004	982	1004	0.94
20	26	2.6	2.5e+02	2.6	3.2	1	23	1047	1069	1047	1069	0.95
21	26	0.0038	0.36	11.6	1.3	2	23	1076	1098	1075	1098	0.96
22	26	0.0015	0.14	12.8	4.3	1	23	1104	1126	1104	1126	0.98
23	26	0.00022	0.02	15.5	2.5	1	23	1132	1154	1132	1154	0.97
24	26	1.2e-05	0.0012	19.4	5.3	1	23	1160	1182	1160	1182	0.99
25	26	3e-05	0.0028	18.2	1.3	1	23	1193	1215	1193	1215	0.97
26	26	1.4	1.3e+02	3.6	2.5	1	21	1284	1304	1284	1307	0.88

Sequence Information

Coding Sequence: ATGACAAAGCCGAcgtataatttcaaagttgaaattGTCGATGTCGATATGAACGATGCCGAGTCAGATGATGATCTCGTGACTGACGCCGCCCCtcttattgaaaaagaaatgcaAGTGTTTATATGTcattattgtaattattattttacgaagAAATCCATGTTGGTGGCTCATGTTAAAAGAACACATCATGCACTGTACAATTGCGTTTTGTACGATTGCCATTTGTGTAAAGAAAAAACGTACGCGCGTCGCCAAGATATTCTTGTACACATGCGAAGTCATCATGGACTCAATACAAAttttaatgttgatttttttgctCGAAAATGTAACGTGAGTCAAGtcaatgaacatttaaataaaactctCATTAATACGCCATTCCAATTGTACGAATGTCTGCCATGTGCCATACAATATATTCGCACACAAGACATTATCAAACATGTGCGAAAAGTTCACAATCAAAATGACGACATCGATCCTGAtcaattcaaaatcaaaatgaacaATTTGGACTTTCCGAAATATCGTAAAAAGACCGACGAAGTATTTGGATGTAGACCTTGCAAGAAAAAATACAATCGAAGTGCAGATATCATCGTTCATATGAAACAAACCCATGGCGTCACTGTGAATCCTGACGAATATCTGGTCTATTCTGAAGAAAGATTTGGATGTCAATATTGCGAAAAAACCTTTGTCTCACGAGAAATGATGCGATCCCATTGTCAGGATGAGCATAGCTATCGGTCACACATATATGTTTGTACAGAATGTTGTCAACATTTTACATTTGCTCGAAATATGGGCAAACATTTGCGGGATGTTCATAATATTGTGGGAGACGAAGCCATTTTAAGAACGATATCAAGGAGAGGTCATGTCAGAAcagcaaaaatattaaaaaaatacacttgtaaTATTTGTCGAAAGGAATATACGTCTAGAGTACAAATGAAAGTCCATCTGAGCAATGTACATAAATGTGATGAACCCGAATACAAAGTTAATATGAATAAATCAAATCGCGATCAGTTCATTTGTCATCAATGTCATCAGACGTATCTATCGAAAACCAGTTTACAAGATCATATTGAGGAGAGCCATACATCGTTGGATCCTCAACCACTGATATGCACGACGTGTCCGGAGATATGCACAAATCTTGATGACTACTGGTCACACGTTCTTGTTTCTCACAAAGCGCTCGGGTATGACTGTACACTTTGTTTGAATAAATTACGCTCGAAAGTAGATGTCGTTCGACATATGAACGCTCAGCATGACGTTTTTCTTAAATTAAGAAACTCTGAAATGGaagatttgaaattaaaatgtcgGGTCTATATTGACGGCGCTCTACGATATCAATGCAATCAATGCCAGTCTATACTGTACTCGTTCAGCACGCTCAGAACCCACATGTACACTCACACTGGAGAGAAACCAGTTGTATGTGACAAGTGCAGCAAACAATTCCGTACACTATCTCAACTCAAAGTCCATACGGTTTCTGTTCATGAAAATTTACGTCGTTATGGTTGTGAGTATTGTGGGCATGCGTTTGCATCGTCGTCCAATTTGGCGCAACATATTCGAATTCATACGGGTGAAAAACCGTACGTTTGTGATTTGTGTGGTACACGATACGCACAATCTGCGAGTTTGTACAGTCATAAATTGACGCATGAACAAAACCGCTGTCATGTGTGTAATGTTTGCGGTCGAGCGTTTCATCGTTTACCTCGTTTACGTCAACATATGCGAATCCATACAGGTGACCGACCACCCCGATCACACATTTGTGATATTTGTCACAAAGGATTTCGCACTGGAAGTGAAATGAGGCGCCATCAAGAAATTCATAACCAAGAACGATCTTTTGTTTGTGAAACGTGTGGCTCTGCATttaaagttaagaaatatttgaatcaaCATTATAAAGTCCATCGCAATATGGGCGGCTTTAGTGAGATGTTGCCTCCAAATGTAACGAAATACCCCATCGTAATTAACGTAAGGTTTATGAAGTGGTCTTGTTTGCAATGTGGATCTCATTTTAATTCTTACAAACATCTTTCTCTACACACTTCAGATTGTCTTGGAAAAAAGAATTTATTGAATGAACCTATCAAcaatattgaagaagaaaatccaATATGTCAACCAACACCAGTAGAActatcaaaaacaaaagaaagtcaTCAAATTGATTCGAACTATCTCCTGTTAAAACATGGAAATAAAGTAGAGATTGCAAAAGGAACTAGAACTGAGTTTGATAAGACGCTAAATGATGTAGTCAGAAAAAgatgtaatgaaaaaaaagaaattaagatTGTGTGTTCTGAATATGCAGCAAGTTTTGTTGAATCTGATCTTGACGAGAATATTGAAGATAATAGTAAACTGATAAATGTTGGGAAGGATAAATTGAGTGAACACATTATAGGAGTTAGGACTTCTAAAACGAGGGCAtgtaaaaaagttgaaaacaattCAGGAAAACGCAGTGGAACGAAGCAATGTAATCTGAATGTAAAGAAGGGATTGAAACATGTTAGATACTCTGTTGAACTTATTGAGAATAGTATAAAATCTAATTGTGAAACAATTAatacagaattaaaaaaaataataagtgacGATATATTGGATTCCTCAGAATCTGGAAATGTAGGTGTTGTATTTGAAAAAGAACCCAAAAACTACGAATCAAAAAAACGAAGTTATACGAAAAGAAATCGTGGTTTGTATGGTGTTAAAATAGATTTATACGGATCATGTAAAATTTGTTCTAAATCTTATgatcagaaatattttcttaaacatATGTTTGTAAAACATGGAATAGATGTAAACACGAGTGGTAGTGACAAATTATTAGAAAGTCATGAGGACAATATGATTCATAGAATAAACACTGTACCTAAAGTGCAATGTACAATTTGTGGAAGTCatttcacaaagaaatatttcaaaaaacatttacttaatattcatttaatacgagaagaagaaatggacaaatattttgttcaaagttatacaaagaaaaaaacggaAGGGATTCAGGATGAACGagaattgattgaaaaaaataaaacaataacgaATGGAAAGGTTCAATATAATTGTCAAACTTGTGAATTAAACTGGTTCGATTTACATTCTTATAAAACACATTTGAGAACGCACGCAGGAGAAATACCAGTTGTATGTGACAAATGTTGCAAACAATTTCGAACCAAAGAAGGTTTGAAATTACACATTCAAGTTGTACATGAAGGTGTtaagaaatatatttgtaaCTTTTGTGAGAAAAGATTTTCTTGTAAATCTAATTTAGTATCTCATAAACGTATTCATACTGGGGAGAAACCATATGTTTGTCAACATTGTGGCAAATCATTTGGAAATTATACCACTTTCTCTATTCATTTACTTTATCATGAAGGAAATCGAAAGTATAAATGTAATTTAtgtgataagaaatattttcgTCAAGGACATTTGACGACACATATGAAAAATCATTCCAGCGATAGACTCAATAAAGGATATAATTACTTTTGTGATTATTGTTATAAAGCTTTTGTATCAAAAGTTGGTCTGAAAAAACATTTGTTAAAACATAACAAAGAAGTTTTAGAAGGTACAACACAATATGAGACTGTTGATGAATTTGGAGACCCAACTGTATGTGAAATTATAACTGTTCCGCCTCCAGAGTGCAATGCTATTGTGCCAGAAGGTGACATTGTTACTTTAGAAAGGCCATCAGATTGTGACACTGTTCCTATTGATCATTCAGAAGGCGGTGCtagagaaaataaaagtttcattTGTGGATTCTGTTATGCTacgtttaaaaatgaaattggttTGAAAAGTCACTGTAAAAATAATCATGGAATTGTTGGCAAATCTGTTGAACTTACAGAAATACAAATCATGAGTGTCgaataa
Protein Sequence: MTKPTYNFKVEIVDVDMNDAESDDDLVTDAAPLIEKEMQVFICHYCNYYFTKKSMLVAHVKRTHHALYNCVLYDCHLCKEKTYARRQDILVHMRSHHGLNTNFNVDFFARKCNVSQVNEHLNKTLINTPFQLYECLPCAIQYIRTQDIIKHVRKVHNQNDDIDPDQFKIKMNNLDFPKYRKKTDEVFGCRPCKKKYNRSADIIVHMKQTHGVTVNPDEYLVYSEERFGCQYCEKTFVSREMMRSHCQDEHSYRSHIYVCTECCQHFTFARNMGKHLRDVHNIVGDEAILRTISRRGHVRTAKILKKYTCNICRKEYTSRVQMKVHLSNVHKCDEPEYKVNMNKSNRDQFICHQCHQTYLSKTSLQDHIEESHTSLDPQPLICTTCPEICTNLDDYWSHVLVSHKALGYDCTLCLNKLRSKVDVVRHMNAQHDVFLKLRNSEMEDLKLKCRVYIDGALRYQCNQCQSILYSFSTLRTHMYTHTGEKPVVCDKCSKQFRTLSQLKVHTVSVHENLRRYGCEYCGHAFASSSNLAQHIRIHTGEKPYVCDLCGTRYAQSASLYSHKLTHEQNRCHVCNVCGRAFHRLPRLRQHMRIHTGDRPPRSHICDICHKGFRTGSEMRRHQEIHNQERSFVCETCGSAFKVKKYLNQHYKVHRNMGGFSEMLPPNVTKYPIVINVRFMKWSCLQCGSHFNSYKHLSLHTSDCLGKKNLLNEPINNIEEENPICQPTPVELSKTKESHQIDSNYLLLKHGNKVEIAKGTRTEFDKTLNDVVRKRCNEKKEIKIVCSEYAASFVESDLDENIEDNSKLINVGKDKLSEHIIGVRTSKTRACKKVENNSGKRSGTKQCNLNVKKGLKHVRYSVELIENSIKSNCETINTELKKIISDDILDSSESGNVGVVFEKEPKNYESKKRSYTKRNRGLYGVKIDLYGSCKICSKSYDQKYFLKHMFVKHGIDVNTSGSDKLLESHEDNMIHRINTVPKVQCTICGSHFTKKYFKKHLLNIHLIREEEMDKYFVQSYTKKKTEGIQDERELIEKNKTITNGKVQYNCQTCELNWFDLHSYKTHLRTHAGEIPVVCDKCCKQFRTKEGLKLHIQVVHEGVKKYICNFCEKRFSCKSNLVSHKRIHTGEKPYVCQHCGKSFGNYTTFSIHLLYHEGNRKYKCNLCDKKYFRQGHLTTHMKNHSSDRLNKGYNYFCDYCYKAFVSKVGLKKHLLKHNKEVLEGTTQYETVDEFGDPTVCEIITVPPPECNAIVPEGDIVTLERPSDCDTVPIDHSEGGARENKSFICGFCYATFKNEIGLKSHCKNNHGIVGKSVELTEIQIMSVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -