Basic Information

Insect: Pachypsylla venusta
Gene Symbol: -
Assembly: GCA_012654025.1
Location: CM022878.1:8806868-8810062[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.0017 0.16 12.7 5.9 1 23 63 85 63 85 0.97

2 18 1.4e-06 0.00013 22.4 1.2 1 23 91 113 91 113 0.98

3 18 2.4e-06 0.00022 21.7 4.0 1 23 119 141 119 141 0.97

4 18 0.00025 0.023 15.3 8.4 1 23 147 169 147 169 0.99

5 18 0.0029 0.27 12.0 2.9 1 22 176 197 176 197 0.96

6 18 0.94 88 4.1 2.9 1 13 228 240 228 242 0.88

7 18 0.37 35 5.3 0.2 1 23 273 296 273 296 0.93

8 18 0.00087 0.081 13.6 4.1 1 23 302 324 302 324 0.98

9 18 0.0037 0.35 11.6 1.8 1 23 330 352 330 352 0.98

10 18 0.051 4.8 8.0 9.0 1 23 366 388 366 388 0.99

11 18 0.013 1.2 9.9 7.7 1 23 626 649 626 649 0.95

12 18 0.00011 0.01 16.4 2.3 3 23 658 678 656 678 0.95

13 18 8.7e-08 8.1e-06 26.2 2.3 1 23 683 705 683 705 0.98

14 18 0.00021 0.019 15.6 2.2 1 23 711 733 711 733 0.97

15 18 4.6e-06 0.00043 20.8 0.6 1 23 739 761 739 761 0.98

16 18 7.4e-05 0.0069 17.0 5.2 1 23 767 789 767 789 0.98

17 18 6.8e-05 0.0064 17.1 0.8 3 23 800 820 798 820 0.96

18 18 0.01 0.93 10.3 1.0 3 21 828 846 826 847 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.0017	0.16	12.7	5.9	1	23	63	85	63	85	0.97
2	18	1.4e-06	0.00013	22.4	1.2	1	23	91	113	91	113	0.98
3	18	2.4e-06	0.00022	21.7	4.0	1	23	119	141	119	141	0.97
4	18	0.00025	0.023	15.3	8.4	1	23	147	169	147	169	0.99
5	18	0.0029	0.27	12.0	2.9	1	22	176	197	176	197	0.96
6	18	0.94	88	4.1	2.9	1	13	228	240	228	242	0.88
7	18	0.37	35	5.3	0.2	1	23	273	296	273	296	0.93
8	18	0.00087	0.081	13.6	4.1	1	23	302	324	302	324	0.98
9	18	0.0037	0.35	11.6	1.8	1	23	330	352	330	352	0.98
10	18	0.051	4.8	8.0	9.0	1	23	366	388	366	388	0.99
11	18	0.013	1.2	9.9	7.7	1	23	626	649	626	649	0.95
12	18	0.00011	0.01	16.4	2.3	3	23	658	678	656	678	0.95
13	18	8.7e-08	8.1e-06	26.2	2.3	1	23	683	705	683	705	0.98
14	18	0.00021	0.019	15.6	2.2	1	23	711	733	711	733	0.97
15	18	4.6e-06	0.00043	20.8	0.6	1	23	739	761	739	761	0.98
16	18	7.4e-05	0.0069	17.0	5.2	1	23	767	789	767	789	0.98
17	18	6.8e-05	0.0064	17.1	0.8	3	23	800	820	798	820	0.96
18	18	0.01	0.93	10.3	1.0	3	21	828	846	826	847	0.92

Sequence Information

Coding Sequence: ATGTCTGCCATGTCACATACTTTGTCCCAGATGAATACGGCCGCCATGAATTCGGCTATGAGTACGGCAATGAACATGTTTTCCCATTACAATCATCAGGAGTATATTTTACAGGAACTAACTCCTCTTATCAAACCTAATAAAGAACCTGTGCACCCTAACACCCAACAGCAAAATAATATGCCCCACGAATGCCAAACCTGTCACCGAAGATTTGCACAAAAACAGACACTGATACAGCATACGACCACTCATACAGGAATTAAAGCTTTTCAGTGTCAACTTTGCTTTAAAAATTTCACACAGCAAGGTTCTTTGCAGCGTCATATGGCCATACATAATGATGAACGGCCGTATGCATGTGAAGTTTGTCATAAAGCTTTCAGACAAAAAAGTCATTTAACCAATCACGCTAAATCGCATGTAGACAATCGGATGTACAAATGTACCCTGTGTACTAAATCTTTTAATCGATCAGATCACTGCAAGCGTCACATGTTGACTCACTCTACTAACAGGCCTATTTACACTTGCTTCTTCTGCAACAAAGAATTTAAAGAAAAGTATCTTATGAAAacccacataaaaaaaaagttgtgttttCATGAGGCAACCCGGACACGTCGTCCAAAAGATGGAAATGAACCACCAAAAGAAAGACTCAAAAGAGTAAAATTCCTGTTTCAGTGTGAACACTGTTACAAGAACTTTCATCGAAGTACAAAAGAATTTGACAATAAATACTtggaaaaatattgtaaaaattgttGTCCGGTCACTGAACAAGAAAAATTCAGCTTTTTTGAAGAAGAGGTGTACATTTGTACCGTGTGTAATGGGCCtcctttcaataaattaaaaacttacAACCGTCATATGGCTTTACACAGTGAAGACAGAAAGTTTGAATGTGAATATTGTCATTTGCGTTTCCAGAAGAAATACCTTCTTCGGTATCACTTGAATATTCACAATAACGTAAAAGATTACCAGTGTCAGCTCTGTGGTCTGCAGTTCGAGACAATGATAAAGCTAAGGGATCACTATTGCGTGCATGTCGAACACGCAGAGTATTTGGCGACCATCATGAAAATTTATCAGTGTCATCATTGTTCCAAACTTTTTGTGAGGAGAACCAATTGTGTGAAACATGTTCGGTCACACATGAACTTACCGAGAAGACCCAAAGGACCGAGGCCGAAAGTTGAAGAGaatgaagatgaagaagatATCGCTAAACCAAATGCTAACAGAGTGATTCTTCCGACAGACTCAAGTGCAATCAACAGTGGCAACCGTGTGGACAATGTAAACCAATACGACCACTTTCTGAGTAAGAGTAACATGTCAGGCTCTAATCCTGTCTCATCCGGAAACGCACTTCTCCCATCGGTTAATGATGAGGACGACGACAACGATGATGATCATTATATGGGAGATGATCAtcatgatgattatgatgaagATAGCACCCCCGTCACGTCACAACCAAAACCAGCTCAGCATTCAAACACTCAAAACAACTTTAACAATGGAAACTACTATCAACAGTTCAACAACTTCTACTGCAACAAACCCGTAGCGGGCGAAACTAACATTACCAATCAAAACATGTTTCAAAATAACTACAACCAGAGTTCAAGTCAAAATTATGGCTTCGATGGTATGCTGATGAATCAAAATAATCAGGTTTCATCGGCAGCTTCAAATAATAGTAATGCGAACTTGGCAGTGAACAATGCGCACCCTATTCATTTCCCAACTACAGCTCAGAATAATATTCAAGTGTACGGTCCTGTCGAAATCGAACATCCTGACATTGCAGATTTGGAAATAACTAGTAAACCTAGAGATGACGACAACAACCCCGCTCCTTTTCATTGTTACgtttgtaagaaaaaatatcgGCACAAAAAGCAGTTGGTTCGCCATTTCCAGGTAAATCACACGAACGACTACGATAAGGTGATTTGTGACATATGTCATAAGGAGTTTACTCACAAATCCTCCCTCGTAGAGCACAAACTTTTGCATTTGCCTCCAAAATTCAAATGTCCTGTTtgtcaaaaaatgttcaatagaaaaTACTCTTTGAAAAGGCACATGCTGTTACACAAAGGTATACGACCTTTCAATTGTAATAGATGCCCAGCTTCTTTTAATCATAAAAAATCATTGGAGATTCATTTGCTAAAACACGAAGGTATATTGCCGTACGAATGTAATATTTGCAACAAAAGATACGTGGACAAGGGTACGTTAAGTAGGCACTACCTGGTGCATTCAGGAGAAAGAAAATTCGTCTGCCATTTGTGTGATTTGAGATTTTCTCAGAAAATTCATTTGAGCAAACATTACTTAACCCACgatgaaattgaaaagaagCTCATCCTAGACTGTCCTGTCTGTGaaaagaaattctacacaaAGTTTAACTTTGGTCGACATTTAGAAACGCACAATAAAAAACGTGGTGTTCACTGTGAAACGTGTAATAGAACATTTAGTTTTGAAAATGGATACCAGAGACATTTGGAGAAAGGGAAGTGTAATCCCAAAGGAACAGTTAAACCAactacaaaaagaagaagaaagaaacacATGTCGGATGATGATAGCAGCGATGAACCCACACCAAGAAGGAGCAAACGacagaagaaaacaaaaaagaagaaaagaaagaagaggaagaaggtTGTGGTCGAATCCAGCGATGGTGAAGACGACTCACTTCCTGAAGAAgaggaggaggaagaagaagacgaagaaGATGCGTACGAGTTACCCTTGGAAATCAAAACCGAATTAAACCCTGATGAAGATGTCAAGAATATTCAGCACATAAACCCGGATTATAGTGAGAACTTTGATTCAGAAGTAGAAGAACTTTCAatgaaacatttgaaaaaagagaaatttactGCCCAAGTGAAGAATGAACAAATCTCAAATCAATTGTCCGATCAGCTTACCTCACAGCAAACTGTCATGATCAATAATCAGTTCGCGAGACAACAGTTTAATAGTCAATCGATTTCAAATGAATTTACAAATGATCAATATATAGCACCAGTCATTTCAACAGAACAGTTTGGATTAAGTGAATCATTCGCTTCTACAGTTGAACAGTTTCCGAGGCAATCTTTGACAAGCGACCACTTTGCAGTACCGCAGTTAAATAACTGGACTGGATAG
Protein Sequence: MSAMSHTLSQMNTAAMNSAMSTAMNMFSHYNHQEYILQELTPLIKPNKEPVHPNTQQQNNMPHECQTCHRRFAQKQTLIQHTTTHTGIKAFQCQLCFKNFTQQGSLQRHMAIHNDERPYACEVCHKAFRQKSHLTNHAKSHVDNRMYKCTLCTKSFNRSDHCKRHMLTHSTNRPIYTCFFCNKEFKEKYLMKTHIKKKLCFHEATRTRRPKDGNEPPKERLKRVKFLFQCEHCYKNFHRSTKEFDNKYLEKYCKNCCPVTEQEKFSFFEEEVYICTVCNGPPFNKLKTYNRHMALHSEDRKFECEYCHLRFQKKYLLRYHLNIHNNVKDYQCQLCGLQFETMIKLRDHYCVHVEHAEYLATIMKIYQCHHCSKLFVRRTNCVKHVRSHMNLPRRPKGPRPKVEENEDEEDIAKPNANRVILPTDSSAINSGNRVDNVNQYDHFLSKSNMSGSNPVSSGNALLPSVNDEDDDNDDDHYMGDDHHDDYDEDSTPVTSQPKPAQHSNTQNNFNNGNYYQQFNNFYCNKPVAGETNITNQNMFQNNYNQSSSQNYGFDGMLMNQNNQVSSAASNNSNANLAVNNAHPIHFPTTAQNNIQVYGPVEIEHPDIADLEITSKPRDDDNNPAPFHCYVCKKKYRHKKQLVRHFQVNHTNDYDKVICDICHKEFTHKSSLVEHKLLHLPPKFKCPVCQKMFNRKYSLKRHMLLHKGIRPFNCNRCPASFNHKKSLEIHLLKHEGILPYECNICNKRYVDKGTLSRHYLVHSGERKFVCHLCDLRFSQKIHLSKHYLTHDEIEKKLILDCPVCEKKFYTKFNFGRHLETHNKKRGVHCETCNRTFSFENGYQRHLEKGKCNPKGTVKPTTKRRRKKHMSDDDSSDEPTPRRSKRQKKTKKKKRKKRKKVVVESSDGEDDSLPEEEEEEEEDEEDAYELPLEIKTELNPDEDVKNIQHINPDYSENFDSEVEELSMKHLKKEKFTAQVKNEQISNQLSDQLTSQQTVMINNQFARQQFNSQSISNEFTNDQYIAPVISTEQFGLSESFASTVEQFPRQSLTSDHFAVPQLNNWTG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -