Pven006668.1
Basic Information
- Insect
- Pachypsylla venusta
- Gene Symbol
- -
- Assembly
- GCA_012654025.1
- Location
- CM022880.1:13120281-13121558[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.9e-05 0.0018 18.8 0.3 3 23 23 44 22 44 0.96 2 13 1.6e-05 0.0015 19.1 0.8 3 23 74 95 73 95 0.95 3 13 0.00018 0.017 15.7 1.0 1 23 100 122 100 122 0.97 4 13 5.3e-05 0.0049 17.4 0.2 1 23 127 149 127 149 0.98 5 13 1.6e-06 0.00015 22.2 1.1 3 23 156 177 154 177 0.96 6 13 3.4e-06 0.00032 21.2 4.2 1 23 182 204 182 204 0.98 7 13 1.3e-06 0.00013 22.5 0.5 1 23 209 231 209 231 0.99 8 13 5.8e-05 0.0055 17.3 2.9 1 23 238 261 238 261 0.98 9 13 1.7e-06 0.00016 22.2 1.0 1 23 266 288 266 288 0.98 10 13 7.7e-05 0.0072 16.9 0.5 2 23 294 316 294 316 0.95 11 13 0.19 18 6.2 4.7 2 23 322 344 321 344 0.91 12 13 1.5e-05 0.0014 19.1 2.0 1 23 349 371 349 371 0.98 13 13 0.00011 0.0099 16.5 2.0 1 20 376 395 376 397 0.94
Sequence Information
- Coding Sequence
- aTGAGTGAAAACAAATTGTCACGCCGGAAATCTGTTTCTGAACCACCTGATAAAGTTAAGCCTTCCTGTGCAAGGTGTGGTAAAGCGTTTTATTCTAAATCATCAATCGTACGTCACATCAGGTCAGTACACGGTGAGCACATATTATCAAATTATGAGGGGAGttcatctgaaaaaaaattggcacgCCAGAAATCTGATTTTAAAGAAAGGCCTTCCTGTGCAGAGTGTGGTAAAGTTTTTTGTTCTAAAGTATCAGTCAGACGTCACATCGAGTCTATACATATGAAAATACCGCATCAGTGTGATGTATGTCAAAAACAGTTTAGAAGAATAGATGCATTGATTTACCATAAGGaaattcataaggataaaaCCTACGAGTGCGAAGTTTGCGGGAAAAAAGTCACTTCAAGAAGAAAGTTAGCTGATCATGAAAAAATTCATCGCCTTGTGCGAGTGAATTGCGATATTTGTCccaaaagtttttcaaataagACTCAATTAAAAATGCACAAGTTAACGACTCACGAGGGTGTAAGATTTAAATGCCACCAGTGTCcacaatttttcaaaagtaaagATCAGTTGAGACTTCATTTAAAGATTCATGAGGGTTATACATTTCAGTGTAGCATATGTTCaaagttttttatttcacaaGCTAACCTAGACGTACATATTAACAGACACAAAGCCGACAATGTAAAATTTACATGTTTTCAGTGTTCACAAGTTTTCCGACAAAAACTTAGTTTGAAAAATCACTTAATGACAAGAcatcaaaatatgaaattcaaatGCACAAAGTGTGATAAAAGTTTTGGTTATCAGGGAGATTTAGGTCAGCACATGAAACTACATCAGGGAATCATACCCACATGTGACATATGTGGTAAAACTTATTCTTCTAACGCGAGAGTTCGAAAACATAAAAGAGCTGTTCATGATGGTGAACGCGTAAAGTGCATTCATTGCGACAAAAGGTTTAATCAAACATACCAGCTGAACTGTCATGTTCAGAGTCAGCATGAAAAAGTGAGATTTGAATGTGTTCAATGTGGTAAATCATATTCGGAAAAGAAAACTCTCAAATATCATTTACAAAAACATCAAGGTCAGGTGTTCAAGTGTTCAAGGTGTTCAAAGAAATTTGACAGCCAACGTTCTTTAAATAAACACACAATATCTGCTAATAAGACAGGAAATAAAAGCTTCTGCTATCGGAAGTCTAAGAAGAAAGGCAAGATTTCGGATCTCGATTTCGTGGAGACTTGA
- Protein Sequence
- MSENKLSRRKSVSEPPDKVKPSCARCGKAFYSKSSIVRHIRSVHGEHILSNYEGSSSEKKLARQKSDFKERPSCAECGKVFCSKVSVRRHIESIHMKIPHQCDVCQKQFRRIDALIYHKEIHKDKTYECEVCGKKVTSRRKLADHEKIHRLVRVNCDICPKSFSNKTQLKMHKLTTHEGVRFKCHQCPQFFKSKDQLRLHLKIHEGYTFQCSICSKFFISQANLDVHINRHKADNVKFTCFQCSQVFRQKLSLKNHLMTRHQNMKFKCTKCDKSFGYQGDLGQHMKLHQGIIPTCDICGKTYSSNARVRKHKRAVHDGERVKCIHCDKRFNQTYQLNCHVQSQHEKVRFECVQCGKSYSEKKTLKYHLQKHQGQVFKCSRCSKKFDSQRSLNKHTISANKTGNKSFCYRKSKKKGKISDLDFVET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -