Pven011096.1
Basic Information
- Insect
- Pachypsylla venusta
- Gene Symbol
- -
- Assembly
- GCA_012654025.1
- Location
- CM022874.1:3030180-3032747[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1 94 4.0 0.7 1 21 25 45 25 46 0.92 2 20 0.0081 0.75 10.6 0.4 1 23 53 76 53 76 0.95 3 20 0.18 17 6.3 0.9 1 19 88 106 88 110 0.80 4 20 2.3e-05 0.0021 18.6 2.2 1 23 116 139 116 139 0.97 5 20 0.00047 0.044 14.5 4.6 1 23 153 175 153 176 0.95 6 20 0.0024 0.22 12.2 0.2 2 23 182 203 181 203 0.96 7 20 1.4e-05 0.0014 19.2 4.3 1 23 209 231 209 231 0.97 8 20 0.049 4.6 8.1 9.0 2 23 238 259 237 260 0.94 9 20 0.27 26 5.7 1.3 2 19 312 329 311 331 0.92 10 20 2.3e-06 0.00021 21.7 1.1 1 23 340 363 340 363 0.97 11 20 0.0017 0.16 12.7 3.1 2 23 372 394 372 394 0.90 12 20 2 1.9e+02 3.0 0.8 1 21 404 424 404 425 0.84 13 20 2.1e-05 0.0019 18.7 2.3 1 23 431 453 431 453 0.95 14 20 0.00023 0.021 15.4 0.5 1 23 461 484 461 484 0.97 15 20 3.3e-05 0.0031 18.1 2.9 1 23 497 519 497 519 0.97 16 20 9.5e-06 0.00089 19.8 2.3 1 23 525 548 525 548 0.97 17 20 0.00011 0.011 16.4 2.7 2 23 559 580 558 581 0.94 18 20 0.00014 0.013 16.1 0.1 2 23 587 608 586 608 0.97 19 20 3.9e-07 3.7e-05 24.1 0.6 3 23 616 636 614 636 0.97 20 20 2.2e-06 0.0002 21.8 6.2 1 23 642 665 642 665 0.98
Sequence Information
- Coding Sequence
- ATGTTGAATACACATCGGAATTTAATCGGAAAGAAACGATTCAGAAAGGATCGTCGCTTCAAAGGGCAAGAATTTGAATGTGATTGTTGTGCGGAGAAGTTTAAATATAAGTCGGACATTCTTGAtcatattattaaaatgaaagatTTGCATCCGTACGCGTGCGATTTGTGTCTGAAGGAGTACAAAGGAATCAAAACGTTACAGAAACATATTAAAGAAACACATCTGGGACTGACACCTAAACCGGTTCAAGCAACTTTCTCTTGTCCGGTATGCTCGAAAACATTTctattaaaacaaaagttagaagAGCATGACCATGTTCACACCGGTCACAAGAAATTTGAATGTTATCATTGTGGGAAGACGTTCGCTGGGAAGTACGCCATGAGTCGACATATCAAGAATACGCATGTCGTTCAGAAAGTTGATAGTGGAACGTTTGTCAAGAAGTTCACCTGTGACAAGTGTGGCAAGTGTTATGTTCGCCAGGGTGCGCTGAACTTTCATTATAAAGTTCATCACGGAGGAGGTAGACTAGTGTGTCCAATTTGTGGCAAGAAGCTGTCCGAACGAAGATCGTTGGAGTTTCATATTAATTCACATAAAGGAATTAAACCTTTTTGTTGTGAGATTTGTGGGAAATCGTTTTCCACggggaaatatttgaaaattcatatgcTTCATCATACAGGAGAAATGCCGCTCAGTTGTCATATGTGTTGTAAGAAATATAAACAAAGGTCAGCGCTTACTTTACACTATAGGAGACATCATCCGGGGACTTTGGTGCCGCCCACTTCACAGAGAGATTTGGTATCCCCCCAGATCAATGAAGAGAAAGATATTGATAAACCTAAAATATGTGAATTTGATCTTAGTAATATCAAACCGGTTGTTGACTCATACAGAATAGAACAGAATCAAATGCAATGCAACTACTGTGGCGTCAAGTGTGATACATTAACCAGTTTTTACATTCACAAGTACGAGTGTCGAAAACAggcgaaaattttcaaatgtgcTCTTTGTGGAAAACAATTTACTCGAAAGAAAACGTTAACGTTGCATTTGTTAATGGTACACGTTCAGATCGATGAACAAACTAACACGTGTAACCTTTGCCACGTGACCTTTGAGTCGAACAAACATTTGAGATCACATATAGTGGCCAAACATAAATCAAGAAAAAAGAATGCAGGCTTTTTTCGATGCAAAACGTGTGACCATGTTGAATATGTTAAATCTAAATTTGTTGTACACGTTCGGAATTGTGAGACGTGCTCGTTTGAGTGTGACCATTGCGGCCGAACGTTCAAAAAGAAACAAGATATTCGGAAACATATTGTGGAACATTCGGGAGACGAGGGCAAACTGTTTGCTTGCGATATGTGTGGAAGtacgtttaaaaataaatattacattgGGAATCATATTCGACGCGTTCATATGAAGAAAGACTCGAGTTTGAGCAAAGGAAAGAATTTCTCTTGTACGCAATGTTCAAAGATGTTTAGGACCCGACAGTCATTAAGAGATCATCAGTATGTCCACACGGGCGTCAAAACTCACCGATGTACGATTTGTAGTAAAACGTTCACCTATAAAGGCGGTGTAACGCGACATATAAGAAATGTACATGAACTGAGACACAAGAAAATGCCCCGACTGCAATGTGAGTCGTGTGGCAAATCGTATTCACACGCTCGAGGTTTGTCCAATCATCGAAACATTCATCATTTGGACGGGAAACTGAAATGCGCGATCTGTGGCAAATTGTTTGCCGGCAAGAAAGGGTTGGATATTCATATGAACACCCATTCGGGTGTCAAGCCTTGGTTCTGCGAATATTGTGGACGAGGCTTTAGTACCAAAGATTATTTGAAAGTTCATAGACGAATTCATACGGGAGAAGCGCCTTTCAAATGTAAAGTTTGTACCAAATGTTTTAAGCAAAGGTCTTCTTTGACGAGTCATTACAGAGTTAATCACCCGGGAGTTccttattga
- Protein Sequence
- MLNTHRNLIGKKRFRKDRRFKGQEFECDCCAEKFKYKSDILDHIIKMKDLHPYACDLCLKEYKGIKTLQKHIKETHLGLTPKPVQATFSCPVCSKTFLLKQKLEEHDHVHTGHKKFECYHCGKTFAGKYAMSRHIKNTHVVQKVDSGTFVKKFTCDKCGKCYVRQGALNFHYKVHHGGGRLVCPICGKKLSERRSLEFHINSHKGIKPFCCEICGKSFSTGKYLKIHMLHHTGEMPLSCHMCCKKYKQRSALTLHYRRHHPGTLVPPTSQRDLVSPQINEEKDIDKPKICEFDLSNIKPVVDSYRIEQNQMQCNYCGVKCDTLTSFYIHKYECRKQAKIFKCALCGKQFTRKKTLTLHLLMVHVQIDEQTNTCNLCHVTFESNKHLRSHIVAKHKSRKKNAGFFRCKTCDHVEYVKSKFVVHVRNCETCSFECDHCGRTFKKKQDIRKHIVEHSGDEGKLFACDMCGSTFKNKYYIGNHIRRVHMKKDSSLSKGKNFSCTQCSKMFRTRQSLRDHQYVHTGVKTHRCTICSKTFTYKGGVTRHIRNVHELRHKKMPRLQCESCGKSYSHARGLSNHRNIHHLDGKLKCAICGKLFAGKKGLDIHMNTHSGVKPWFCEYCGRGFSTKDYLKVHRRIHTGEAPFKCKVCTKCFKQRSSLTSHYRVNHPGVPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -