Basic Information

Insect: Pachypsylla venusta
Gene Symbol: -
Assembly: GCA_012654025.1
Location: CM022883.1:236080-251623[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 4.3e-05 0.004 17.7 2.5 1 23 534 556 534 556 0.98

2 16 0.0006 0.056 14.1 2.6 1 20 562 581 562 584 0.93

3 16 0.00014 0.013 16.1 1.8 1 23 590 612 590 612 0.99

4 16 4.8e-05 0.0045 17.6 1.1 1 22 618 639 618 639 0.96

5 16 6e-07 5.6e-05 23.5 4.1 1 23 650 672 650 672 0.98

6 16 9e-07 8.4e-05 23.0 3.8 1 23 678 700 678 700 0.98

7 16 6.1e-05 0.0057 17.2 6.7 1 23 706 728 706 728 0.97

8 16 4.1e-05 0.0039 17.8 7.9 1 23 734 756 734 756 0.98

9 16 1.9e-07 1.8e-05 25.1 2.4 1 23 762 784 762 784 0.98

10 16 2.8e-06 0.00026 21.5 7.3 1 23 790 812 790 812 0.98

11 16 1.4e-05 0.0013 19.3 9.5 1 23 818 840 818 840 0.98

12 16 0.00091 0.085 13.5 7.7 1 23 846 868 846 868 0.97

13 16 6.4e-06 0.00059 20.3 5.1 1 23 874 896 874 896 0.98

14 16 8.5e-06 0.0008 19.9 0.2 1 23 902 924 902 924 0.98

15 16 0.00055 0.051 14.2 3.8 1 23 936 958 936 958 0.99

16 16 0.012 1.1 10.0 10.3 1 23 964 987 964 987 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	4.3e-05	0.004	17.7	2.5	1	23	534	556	534	556	0.98
2	16	0.0006	0.056	14.1	2.6	1	20	562	581	562	584	0.93
3	16	0.00014	0.013	16.1	1.8	1	23	590	612	590	612	0.99
4	16	4.8e-05	0.0045	17.6	1.1	1	22	618	639	618	639	0.96
5	16	6e-07	5.6e-05	23.5	4.1	1	23	650	672	650	672	0.98
6	16	9e-07	8.4e-05	23.0	3.8	1	23	678	700	678	700	0.98
7	16	6.1e-05	0.0057	17.2	6.7	1	23	706	728	706	728	0.97
8	16	4.1e-05	0.0039	17.8	7.9	1	23	734	756	734	756	0.98
9	16	1.9e-07	1.8e-05	25.1	2.4	1	23	762	784	762	784	0.98
10	16	2.8e-06	0.00026	21.5	7.3	1	23	790	812	790	812	0.98
11	16	1.4e-05	0.0013	19.3	9.5	1	23	818	840	818	840	0.98
12	16	0.00091	0.085	13.5	7.7	1	23	846	868	846	868	0.97
13	16	6.4e-06	0.00059	20.3	5.1	1	23	874	896	874	896	0.98
14	16	8.5e-06	0.0008	19.9	0.2	1	23	902	924	902	924	0.98
15	16	0.00055	0.051	14.2	3.8	1	23	936	958	936	958	0.99
16	16	0.012	1.1	10.0	10.3	1	23	964	987	964	987	0.97

Sequence Information

Coding Sequence: atgaatTCAAATCGAGATGAGCCAACAAGATCAGGATCAAATGAGAGTAACCATGTTTCCCCTTACATGCCACCTGTATCATCACACGCCAATGTATCATCAGATGCCCCCAGATTAACATCTCTTACTACACCAGTAGCCTTGTCGGATGTTACCAAGTATTGGGTACTTTCAAACTTACTTCCAACCTCATCAAACTTACCACAGATGTATGGAATAAGTGGAAACCTACCTACGAACTCTGTTGCAGTCAAAAATGGTGTTGAAACGTCCGTCATATCGTCTAATATGACATCTCTCAAATCCATGACAAGCAACACTTTATCTCAGGATTCTCAGGTGACTTCCCAAAGTATTGGAAATCCCACTACTCGTTCCGGGGAACTGCATCAACCATttgctaataataaaaatgaacaaattaaagAACCGAAACCACCTGATCGAACAGCTGAACCTTCAAGGACGATGGTGAATTGTGAGATTCAATGTGAATTACCACCTTTCCCAAATTCATCTCTAAAGTCCACCGTTATGGAAGTTGATGCAAGAGAAGTAAACCACCAGGAAGATGATCAAAATTCTTCGTACATTCGATCCAATGATTCTCAGTACTCCTCCCAACCTATTACCTCCCCAAATCATCATCAACCCATCCCTTCACCTAATCATAGGCAAATAACATCACCAAATCAACAAACTATGCCTTCTTCAAGTCAGCACGCTCCAACGCCTTCTCCAAACCAACAATCTTCCAATCCATCATCGAACATCAATTCTCCCATTGATAAACAAGTGTTATCACCTAGTCAACAATCACCAATGCATCTTGCAACGCAACATTCGCCAATGCATTTATCAAATCAAAATCATAACTCCAATCGTCATTTGTTTCAAAGTCCACCATCGAAAAAtccttctccttcatcatcaacATCTTCATCCAGTCAAATGGTGACCCAACAAATGAATCAGGACAGTCAAAGTcagcaacagcagcaacatttGCATATTCAAAATATAGGAGCTGTACTTTCGCCACCTAATTCTCATGTTTACTCACAAATGCATGTTACGGGAAATCAAATCCAATCAGCAGATAACAATGGACAGGTTCAGGTGGGTGTTACTCTTCAGCCTGAGCGGTTTATGGGAAATCAAATTCAATCAGCAGATAATAATGGACAGGTTCAGtcTCCACCAGTTCAGTCTCAATATCAAATGGATTCACAGCCTGGTAACAGTTCAGGAAGTCTGGTTGATGCTAATCtcattaaaacaaataatggaGACATGAAGGATACTCTTCTCTCTGTTGATATGTACAAGGTCAACTCAGACGAATTCAATCAACTTCTCGCCTATCATGAAGTATTTGGAAAACTTCAATCATCTGTGGTGACTCATACGTCGACAAGTTTGGGACTCCCAACGTGCATTAGTACAGTAACCACCAGTACTGGAGACAGCATTTCTAATGCCGGCACGTCAAGTACAGTAGGCACTTCTACCTCCGTCATtactaacaacaacaataacgcCACAAATGACGCCACTTTGGATATAAAACCCGACATTGAGATGCCAGTGATGGGTCATCACACGTGTGATATTTGCGGCAAGTTTTTCCCTTATAGATACCAAATGATTGTACACAGACGATATCACACTGAGAGAAAGCCTTTCACGTGTCATgtgtGCGGTAAAGCTTTTGACTTTCAAGCTGAGCTAATGAGTCATGGTAAATGTCATTTGGGCGGATCAATGTATACGTGTGCGGTATGTTTTCACGTGTTCGCTAATGAGGAAAGTTTACAGAGGCATACGAAACGTCATTCAATAGACAGGCCTTATGTGTGTACGATTTGTATGAAAACGTTCGCCCGTAAGGAACATTTGGAAAATCATACGAGgagAAACTCCCCACGTGTGTCAGgagAAACTCCCCACGTGTGTCAGGTATGTGGTAAGAAATACACCCGTAAAGAACATCTCGCCAATCATATGCGATCACATACGAACGATACACCTTTCAAATGTGAAATCTGTACGAAAAGTTTCACGCGAAAAGAACATTTCACCAATCACATTATGTGGCACACGGGAGAAACACCGCATCGATGTGATTTCTGTTCGAAAACATTCACACGTAAAGAACATCTATTGAATCATGTCCGACAACACACAGGGGAAAGTCCTCACAAGTGTCATTACTGTGCGAAAAGTTTTACTCGTAAAGAACATTTAGTGAATCATGTACGACAACATACGGGAGAAACGCCTTACCAATGTCAATATTGTCCTAAAGCTTTCTCGCGTAAAGATCATCTTGTCAATCATGTCCGTCAACACACGGGAGAATCACCACACAAATGTTCATACTGCAAACAAAGTTTCACTCGAAAAGATCATTTGACCAATCACATTCGATTACACACAGGAGAAAGTCCACATAAATGTCATTTTTGCAGTAAAAGTTTTACACGTAAAGAACATCTGAATAATCATATTCGACTTCATACAGGTGAGTCGCCACATAAATGTGATTTCTGTATGAAAACATTTACGCGTAAAGAACATTTAACGAATCATTTGAAACAACATGCGGGAGATACGGAACATGTATGTAATATATGTTCGAAACCTTTCGTTAAAAAAGAACATCTCATACATCATATGCGATCTCACACGGGAGAACGGCCGTTCGTATGTCCAGACTGTGGAAAATCATTCCCTCTTAAAGGTAATCTTTTATTTCATCAAAGATCTCATCGAAAACAAAATGGTGAAGTTTTAGAACGTCCATTTAAATGTGATGTTTGTCCGAAAGATTTTACGTGTAAAGGTCATTTAGTGTCCCATTTAAGATCTCATCTGAATGAAAGGCCTCATGTTTGTCCGCATTGTCACAAGTCATTTGTCGAACATACGTGTATGATTAAACATATTCGTAAGAATCATACTTTGGCAGATTTGAATCCCGTACCTTTAAATTCAGAGTCTGTTTTATTACCGCATCATAGTAGTACGCCTACTCCTATATCTCTTGTAGTTCCTGTCGCGCATTCAGCTCCTCTAGCAAGTTATTAG
Protein Sequence: MNSNRDEPTRSGSNESNHVSPYMPPVSSHANVSSDAPRLTSLTTPVALSDVTKYWVLSNLLPTSSNLPQMYGISGNLPTNSVAVKNGVETSVISSNMTSLKSMTSNTLSQDSQVTSQSIGNPTTRSGELHQPFANNKNEQIKEPKPPDRTAEPSRTMVNCEIQCELPPFPNSSLKSTVMEVDAREVNHQEDDQNSSYIRSNDSQYSSQPITSPNHHQPIPSPNHRQITSPNQQTMPSSSQHAPTPSPNQQSSNPSSNINSPIDKQVLSPSQQSPMHLATQHSPMHLSNQNHNSNRHLFQSPPSKNPSPSSSTSSSSQMVTQQMNQDSQSQQQQQHLHIQNIGAVLSPPNSHVYSQMHVTGNQIQSADNNGQVQVGVTLQPERFMGNQIQSADNNGQVQSPPVQSQYQMDSQPGNSSGSLVDANLIKTNNGDMKDTLLSVDMYKVNSDEFNQLLAYHEVFGKLQSSVVTHTSTSLGLPTCISTVTTSTGDSISNAGTSSTVGTSTSVITNNNNNATNDATLDIKPDIEMPVMGHHTCDICGKFFPYRYQMIVHRRYHTERKPFTCHVCGKAFDFQAELMSHGKCHLGGSMYTCAVCFHVFANEESLQRHTKRHSIDRPYVCTICMKTFARKEHLENHTRRNSPRVSGETPHVCQVCGKKYTRKEHLANHMRSHTNDTPFKCEICTKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHKCHYCAKSFTRKEHLVNHVRQHTGETPYQCQYCPKAFSRKDHLVNHVRQHTGESPHKCSYCKQSFTRKDHLTNHIRLHTGESPHKCHFCSKSFTRKEHLNNHIRLHTGESPHKCDFCMKTFTRKEHLTNHLKQHAGDTEHVCNICSKPFVKKEHLIHHMRSHTGERPFVCPDCGKSFPLKGNLLFHQRSHRKQNGEVLERPFKCDVCPKDFTCKGHLVSHLRSHLNERPHVCPHCHKSFVEHTCMIKHIRKNHTLADLNPVPLNSESVLLPHHSSTPTPISLVVPVAHSAPLASY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -