Basic Information

Insect: Pachypsylla venusta
Gene Symbol: -
Assembly: GCA_012654025.1
Location: CM022878.1:2204581-2208483[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 0.19 18 6.2 2.8 3 23 19 40 17 40 0.95

2 27 0.0011 0.1 13.3 0.2 1 23 200 223 200 223 0.96

3 27 0.022 2 9.2 3.0 1 23 314 337 314 337 0.91

4 27 0.0077 0.72 10.6 0.2 1 23 394 417 394 417 0.96

5 27 0.29 27 5.7 0.3 2 23 423 445 422 445 0.94

6 27 0.026 2.4 9.0 1.6 1 23 471 494 471 494 0.89

7 27 2.7e-06 0.00026 21.5 0.5 1 23 500 523 500 523 0.96

8 27 1.8e-05 0.0016 18.9 0.7 1 23 529 551 529 551 0.97

9 27 0.00018 0.016 15.8 4.0 1 23 557 580 557 580 0.97

10 27 1.1e-05 0.00099 19.6 0.5 1 23 584 607 584 607 0.98

11 27 2e-05 0.0018 18.8 1.1 2 23 654 676 653 676 0.97

12 27 6.7e-05 0.0063 17.1 1.0 1 23 681 704 681 704 0.98

13 27 0.51 47 4.9 0.2 2 12 716 726 715 732 0.87

14 27 0.0043 0.4 11.4 5.4 3 23 744 765 742 765 0.97

15 27 3.6e-05 0.0034 18.0 1.2 2 23 800 822 799 822 0.94

16 27 0.00053 0.05 14.3 1.0 1 23 827 850 827 850 0.97

17 27 0.001 0.096 13.4 1.2 5 23 858 876 851 876 0.92

18 27 1.7e-05 0.0015 19.0 0.5 1 23 884 907 884 907 0.98

19 27 9.7e-06 0.00091 19.7 2.8 1 23 1026 1048 1026 1048 0.98

20 27 2.3e-05 0.0022 18.6 0.2 1 23 1054 1077 1054 1077 0.98

21 27 1.7e-06 0.00015 22.2 0.4 1 23 1100 1122 1100 1122 0.99

22 27 2.3e-05 0.0021 18.6 1.3 1 23 1128 1151 1128 1151 0.96

23 27 0.29 28 5.6 0.1 1 12 1156 1167 1156 1178 0.74

24 27 2.1e-05 0.0019 18.7 0.9 1 23 1184 1206 1184 1206 0.97

25 27 6.3e-05 0.0059 17.2 1.0 1 23 1212 1235 1212 1235 0.97

26 27 2.2e-05 0.0021 18.6 0.3 1 23 1240 1262 1240 1262 0.98

27 27 0.00041 0.038 14.6 2.4 2 23 1269 1290 1268 1290 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	0.19	18	6.2	2.8	3	23	19	40	17	40	0.95
2	27	0.0011	0.1	13.3	0.2	1	23	200	223	200	223	0.96
3	27	0.022	2	9.2	3.0	1	23	314	337	314	337	0.91
4	27	0.0077	0.72	10.6	0.2	1	23	394	417	394	417	0.96
5	27	0.29	27	5.7	0.3	2	23	423	445	422	445	0.94
6	27	0.026	2.4	9.0	1.6	1	23	471	494	471	494	0.89
7	27	2.7e-06	0.00026	21.5	0.5	1	23	500	523	500	523	0.96
8	27	1.8e-05	0.0016	18.9	0.7	1	23	529	551	529	551	0.97
9	27	0.00018	0.016	15.8	4.0	1	23	557	580	557	580	0.97
10	27	1.1e-05	0.00099	19.6	0.5	1	23	584	607	584	607	0.98
11	27	2e-05	0.0018	18.8	1.1	2	23	654	676	653	676	0.97
12	27	6.7e-05	0.0063	17.1	1.0	1	23	681	704	681	704	0.98
13	27	0.51	47	4.9	0.2	2	12	716	726	715	732	0.87
14	27	0.0043	0.4	11.4	5.4	3	23	744	765	742	765	0.97
15	27	3.6e-05	0.0034	18.0	1.2	2	23	800	822	799	822	0.94
16	27	0.00053	0.05	14.3	1.0	1	23	827	850	827	850	0.97
17	27	0.001	0.096	13.4	1.2	5	23	858	876	851	876	0.92
18	27	1.7e-05	0.0015	19.0	0.5	1	23	884	907	884	907	0.98
19	27	9.7e-06	0.00091	19.7	2.8	1	23	1026	1048	1026	1048	0.98
20	27	2.3e-05	0.0022	18.6	0.2	1	23	1054	1077	1054	1077	0.98
21	27	1.7e-06	0.00015	22.2	0.4	1	23	1100	1122	1100	1122	0.99
22	27	2.3e-05	0.0021	18.6	1.3	1	23	1128	1151	1128	1151	0.96
23	27	0.29	28	5.6	0.1	1	12	1156	1167	1156	1178	0.74
24	27	2.1e-05	0.0019	18.7	0.9	1	23	1184	1206	1184	1206	0.97
25	27	6.3e-05	0.0059	17.2	1.0	1	23	1212	1235	1212	1235	0.97
26	27	2.2e-05	0.0021	18.6	0.3	1	23	1240	1262	1240	1262	0.98
27	27	0.00041	0.038	14.6	2.4	2	23	1269	1290	1268	1290	0.96

Sequence Information

Coding Sequence: ATGCGACAATTAGGAGACGGCGAACGAATGAATGAAGAGAGTGTTCATCTATTTTGTGATCATTGTAACGAACTCTGCGAAGATAGAAAACAAATGACCGTTCATTTAAAAGTAGAACATGGCGAAATGTTGTTTGGTCAAAGTATTTGGTATGGATGCAAAACGTGTCTCACCAAATTGTACTCTTCGAGGAAAGATATTCTTGAACATATGACCAATGTTCACCATGCGTCGGCCAGCTCCGACCAGAATTTGATTCAATCGAGCGAAGATATTCTGTTTCCGTGCCAAACATGTGATAAATTGAACGTTTGGTCACATTTTTGTAAAGCACATACGCCTAGTTCATACAGTCCCGCTCATATGAACGAATCCCGCTTACAGAGTCCCGCTTGTATGGGCATTCCTTCTATGGATAAATCACAAAATCCTGCAACTGTCCGAGATGAATTAATTTATCCCGCAGTACACCCGGATGGATTAAAAAATCTCGTTTGTACGGATAAATCAAACTGTCACGATTGTCCGGATAATTCAGACAGTCACTCTTCAAGGAACACACAAAATAATCACGTTTCTAGGGACAATCTTGTTCAATATGCATGTGCTTACTGCGAAGAAGTGTTTACTGATGAGCGTGTTTTGAAAGCGCACATTTCTATTTGTCATGGAAAAGAAATTTACGAGAATCCTGATTTTGTCTGTTACATGTGTAAAGAATGTATTAATGCTTTGTATTTTAGTCGACAACAATTGGACATGCATGTTCGGAGAAAGCACAAAGACACGCTGTCCTCCGACTATCTGTACAAAGTCAAACGCTTGAAAGACATTCTATATTCATGTCATCTTTGTCGAACGCCGTGTTTGTATACGAAATTCTGTACTCAACATGACGCGAAAATTCAGTTTGACAATTGTGAAGAACATTCTTCTTGTCATGAGTGTAATATTTGTCAAACTGAATTCAATAATTGTAATAGGCTATGGACTCATATGTTTGATGCTCATTTAGGAGAACGCATGTCGTGTAATTTGTGTGTTGAGCCTGACGACTCTGTCATAATACATTCTCCTTCTCATATGATGGAACATTGGAAGACGACACACAGAAACTCACTCGTGTGTTCTATGAATACAAAAGAACTTGCTCGGAAGTCATCTGTAAACTTAACCTATTTCAAATGTCTCGATTGTAATGCTGAAACCAATCGATTTGAATCTCTAATGGAACATATACGTGATGTACATAATCGTGAATACATACCCTGTCTGTATTGTTCTCAATCATATAGTCTATATAAAAGGCTTGTGAGACATAGTAAAATAGTGCATGGAATTCATATTGAGAGAGGtacgaaaaatttgaaattgaaagctATGATTTGTTCAGAAGATGGAATGGTTCAATTTAGATGTCCAGAATGTGGACTTGTTTGCAATAATTATGAATCTATGTTCGAACATTTTACATTGAATCATGATTATTTTACGCAATATGTTTGTACCTTGTGTGGAAAGGTTTTTAGTGACCCCAAACAACTTTCGGAACATTATCAGAATAGACATTGCATCAATGGTACTTATAAGTGTCCAGAATGTAAGGAGTGTTTCACTTCTGTTGATGCTTTGAAAATGCATCTTCTTGCACATATTAAGATGGATGGTTTTGCATGTTCTAAGtgtgacaaaatattttcatttgagaaaCATTTGAAAGAACACAAGAAAACAATGCATTCCAAAGAGTATGTGTGCTCGGAATGTGGTAAAGTGTTTCCATTGAACACATTTTTGAATAAACATTGgagaaaaaatcattatttgaaCGATTCTTTTGGGTCAGCTGCAGATGTTACAAATAACGAGTCCAATGTTGTTTCTTTGGAGACCCACAAGGAAAGTAGTACTTCAGTCAATAATATCGTCCGTCCCGGGACGAGCAAAGAGTTAACTGTTCAATGTTCTGAGTGCGGTAAAATATTTCCACATCGATTTTCGTTAAATCTGCACTTGAAACGTGTCCATGGAGAACAACGTTTCGAATGTTCGCAATGCGATCAAACttttaaattgaaagtttaTCTGACTGATCACGTTCGACGTATTCATTTGACAACGAAAAAGAAGAACAACGAACACGTCAAATGTGGACATTGCGATAAAATATTTCCGGATATCAAAGATCATATGCGTTGTACTCACCCCCATCTCAAAGAAAGTTATGGATGTTGTGTGTGTAACAAAACTTTTGAGAAAAAACGATATTTGTGTGATCATTTGAGACGCGTTCATGTTATCAACACGAGACAACCAGTATCTTCAAGTAGCAACGAAAATGAACATACAAATAATACGGTTGATAATTCTGAGATGGGAAATATCATTTCATTTGTTCAATGTTCTGAGTGCGGTAAAACATTTCCACATCTATTTTCGTTGAAAAATCACGTATACCGTGTTCATGGAAAACAACGTTTTGAATGTGCGCAATGCGATCAAACttttaaattgaaagtttaTCTAAACGAACACTTTCGACGTATTCATTGTAAAGAAAATAAGGGTGAACGTTGCGGTAAAGGATTTGCCCATAGTGTCAAGTTGGAAAATCATTTACGTAAGCACGATGTCGAAGGTGACGCAACTTATTCATGTTCTGAATGTGGCAAAATTTTCGCGTTCAAAGAATCTGCGAGAAAACATTTGAGACGAGCTCATTCTATCATCTACCCGAGCTCTTCGATTATCAACCAAAATGAAGATAATAATATGTCGAGTAGTAACCAAAATGAAGCCATAAATATGTCGATTAGCAACCAAAATGGAGCTATAAATATGTCGAATAGAAACCAAAATGAAGATACAAATATGTCGGATAGCAACCAAAATGAAGCTATAAATATGTCGAGTAGCAATCAAAATGAAGACACAATAATAATCTTCGATAATTCTGACATCTGTAGCAACGGAAAAGACGATTCGAACGTAGCTCCTCAGGagatcaacaataaaaatagttCTTCAGCCGTGGACGATGTTATTTGTCCCGAGACGAGCAATACTATGtcaatttttcaatgttctGAGTGCAATAAAACATTTCCAGATAAACTCAAGTTCACTAGTCATATGCGTTATCACAAAGACAAAGGATCTTATCCTTGTTCAGAATGTCCCAAAGTGTTTGAAGTAAAACGATATTTGAGTGATCATTTGAGGCGAGTTCATTTTATCATCACGAGACCGCCCCGTCCCCGTAAAATTGAAGATGGTTCAATGGGGAACAAACGTAGATACCAATGTCAGGAATGTCCCAAATCATATGGAGACTCTTCTGGTTTAAAAATTCATCAGAGAAATCATACGGGCGAGAGACCCTTCAAATGTGATTTCTGTGATCAAGCATTTATTAACAAATCAACTCTTAAAAGTCACAGGGATAGAGTCCATTTGGGAGTTAAATATCAATGTCCTATATGTGGACGCTTTATGTCCGACAAATTAATTTATGAAGGTCATGTACGAGCACatttgggagaaaaaaaatatttttgtgatatttgtGGCAGAGGATTTTCTGTTTGGTCGACTTTTAACACTCACAGATACACGCACAATGAGGATCCTATTTATGAGTGTAATAAATGTGATGCAAAGTTTACTATGCCCTCCAAACTAGTCAGACATAAAATgatgaaacataaaaataattcttatgtGTGTGATACATGTGGTGCTAAGTTCACCTCGCAACAAGTGTTAAAGAATCATATGCTAATTCATACCAATGAGAAAACTTGTATTTGTGACATTTGTAATGCTGCTTTTAAAACAAAGAAAGTTTTGCGTCAACATTATAAAACCCATGAAAAGAAAACAGGtagaaattttgtaaaataa
Protein Sequence: MRQLGDGERMNEESVHLFCDHCNELCEDRKQMTVHLKVEHGEMLFGQSIWYGCKTCLTKLYSSRKDILEHMTNVHHASASSDQNLIQSSEDILFPCQTCDKLNVWSHFCKAHTPSSYSPAHMNESRLQSPACMGIPSMDKSQNPATVRDELIYPAVHPDGLKNLVCTDKSNCHDCPDNSDSHSSRNTQNNHVSRDNLVQYACAYCEEVFTDERVLKAHISICHGKEIYENPDFVCYMCKECINALYFSRQQLDMHVRRKHKDTLSSDYLYKVKRLKDILYSCHLCRTPCLYTKFCTQHDAKIQFDNCEEHSSCHECNICQTEFNNCNRLWTHMFDAHLGERMSCNLCVEPDDSVIIHSPSHMMEHWKTTHRNSLVCSMNTKELARKSSVNLTYFKCLDCNAETNRFESLMEHIRDVHNREYIPCLYCSQSYSLYKRLVRHSKIVHGIHIERGTKNLKLKAMICSEDGMVQFRCPECGLVCNNYESMFEHFTLNHDYFTQYVCTLCGKVFSDPKQLSEHYQNRHCINGTYKCPECKECFTSVDALKMHLLAHIKMDGFACSKCDKIFSFEKHLKEHKKTMHSKEYVCSECGKVFPLNTFLNKHWRKNHYLNDSFGSAADVTNNESNVVSLETHKESSTSVNNIVRPGTSKELTVQCSECGKIFPHRFSLNLHLKRVHGEQRFECSQCDQTFKLKVYLTDHVRRIHLTTKKKNNEHVKCGHCDKIFPDIKDHMRCTHPHLKESYGCCVCNKTFEKKRYLCDHLRRVHVINTRQPVSSSSNENEHTNNTVDNSEMGNIISFVQCSECGKTFPHLFSLKNHVYRVHGKQRFECAQCDQTFKLKVYLNEHFRRIHCKENKGERCGKGFAHSVKLENHLRKHDVEGDATYSCSECGKIFAFKESARKHLRRAHSIIYPSSSIINQNEDNNMSSSNQNEAINMSISNQNGAINMSNRNQNEDTNMSDSNQNEAINMSSSNQNEDTIIIFDNSDICSNGKDDSNVAPQEINNKNSSSAVDDVICPETSNTMSIFQCSECNKTFPDKLKFTSHMRYHKDKGSYPCSECPKVFEVKRYLSDHLRRVHFIITRPPRPRKIEDGSMGNKRRYQCQECPKSYGDSSGLKIHQRNHTGERPFKCDFCDQAFINKSTLKSHRDRVHLGVKYQCPICGRFMSDKLIYEGHVRAHLGEKKYFCDICGRGFSVWSTFNTHRYTHNEDPIYECNKCDAKFTMPSKLVRHKMMKHKNNSYVCDTCGAKFTSQQVLKNHMLIHTNEKTCICDICNAAFKTKKVLRQHYKTHEKKTGRNFVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -