Pven011489.1
Basic Information
- Insect
- Pachypsylla venusta
- Gene Symbol
- -
- Assembly
- GCA_012654025.1
- Location
- CM022874.1:12184292-12189815[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 35 0.046 4.3 8.2 3.1 1 19 11 29 11 34 0.88 2 35 0.0026 0.25 12.1 0.7 1 23 43 65 43 65 0.97 3 35 0.2 19 6.1 0.0 2 23 72 93 72 93 0.95 4 35 8.7 8.2e+02 1.0 4.3 1 23 101 124 101 124 0.87 5 35 1.4 1.3e+02 3.6 0.1 2 9 130 137 129 141 0.88 6 35 0.0022 0.21 12.3 3.2 1 23 155 177 155 177 0.98 7 35 0.0015 0.14 12.8 3.4 1 23 183 206 183 206 0.98 8 35 0.00054 0.051 14.3 0.8 2 23 224 246 223 246 0.93 9 35 0.013 1.3 9.9 5.1 1 23 252 275 252 275 0.95 10 35 2.9 2.7e+02 2.5 2.7 1 23 279 301 279 301 0.90 11 35 0.00035 0.033 14.8 1.2 2 23 309 331 309 331 0.96 12 35 5.8e-05 0.0054 17.3 0.2 3 23 367 388 366 388 0.96 13 35 0.15 14 6.5 5.3 1 23 394 417 394 417 0.94 14 35 2.7e-05 0.0025 18.4 5.6 2 23 429 450 428 450 0.97 15 35 0.00037 0.035 14.8 2.2 1 23 456 478 456 478 0.97 16 35 0.00024 0.022 15.4 0.1 1 23 491 514 491 514 0.92 17 35 1.1 1.1e+02 3.8 3.8 1 23 519 539 517 539 0.84 18 35 0.18 17 6.3 1.7 1 23 545 565 545 565 0.93 19 35 1.5e-05 0.0014 19.2 0.2 1 23 571 593 571 593 0.98 20 35 5.5e-05 0.0052 17.4 0.6 1 23 599 621 599 621 0.98 21 35 0.045 4.2 8.2 0.1 2 20 630 648 629 651 0.93 22 35 0.01 0.97 10.2 1.3 2 23 699 721 698 721 0.96 23 35 0.00043 0.041 14.6 0.5 2 23 728 750 727 750 0.95 24 35 3.5e-06 0.00032 21.2 0.3 1 23 759 781 759 781 0.99 25 35 0.012 1.1 10.1 2.6 1 23 787 809 787 809 0.91 26 35 0.00013 0.012 16.2 0.5 2 23 843 865 842 865 0.94 27 35 0.0023 0.21 12.3 4.4 1 23 871 894 871 894 0.98 28 35 0.00033 0.031 14.9 4.3 1 23 905 927 905 927 0.98 29 35 0.0056 0.52 11.1 1.1 1 23 933 955 933 955 0.96 30 35 1.9e-05 0.0018 18.8 0.4 1 23 968 991 968 991 0.93 31 35 0.12 11 6.9 0.2 1 23 996 1016 996 1016 0.93 32 35 0.5 47 4.9 4.7 3 23 1024 1042 1022 1042 0.95 33 35 4.4e-05 0.0041 17.7 0.5 3 23 1050 1070 1048 1070 0.98 34 35 7.3e-05 0.0068 17.0 1.2 1 23 1076 1098 1076 1098 0.99 35 35 0.003 0.28 11.9 0.4 2 23 1108 1129 1107 1129 0.95
Sequence Information
- Coding Sequence
- ATGCGACAAGTTCATCCAACCGAGAAAGATTATCCCTGTCGAATATGCGACAAATCTTTTCCTTACAAATACGCAAAATACAAACATTGCAAAGCTGTACACAAAGGTCTGCCAACGAAACCGACGTTTTCGTGCAATATTTGTAGCACAAGATTTGTGGTTAAAGATCGCTATGAGGATCATATGAGTCTTCATGATGGTATAAAAAGGAATGTGTGTGACGTGTGTTACGCACCGTTTGGAACGTTTGCTCAATTGAGTGCACATAAAGCCATTCATTAtccgaaaaagaagaaaacatatCAATGTAAACTCTGTAGCATGGTGTTCATGTGTCGATCCACGTACAGCATGCACAAATACAAGATACATGAAAACAAAAACTGGCAATGTCCCATTTGTGGAAAAATCTTGGTCATTTATGATCGCAATCATATGAGAATTCACGAAAAAGAACGAAAATTTGTGTGTGAAACGTGTGGAAAAAGATTTAACTgtccaaaatatttgaaagatcATCGGTTAAGTCATGAAGCTATTAAACCATACAAGTGTGATTTCTGTGAGAAACGATTTACACAACGGACACCTCGGAGTATTCACATGAGAAAGTTTCACACTGGAGAGAACCCATTGGTGAAAACTTACGGCCAAGTCCTCAAATCAAACCAGTGTCCCAAATGTAAAAAACAATTCGCCACTCGAAAATCGATGAAGGTACATGTGGCCAACGTTCATTCGTGTGATGCAAAATTTTCTTGCGATATCTGTGGCAAACATTTCAAAGCGAATCGATATGTTCATCGACATAAAGAGAGAACGCATGCTCAAGTTTTTGAGTGTCATACATGCGGAACCAAGCATGCCAGCAAAAGAGTTTTGGGACAACATTTGCTTCAGCATACACCaaaaggaaaaattgaaaaatgtgatTTATGTGATTTGAAATACAGTTCCGCCAAATATTTAAAGAGACATCGTTTGAAAGTTCATCGGGTTACTGAGGCGCtggaaaagatatcaaaaaatgatccATTGGATACAGGAGATTATACAATGGCAGAATGGAAGAAACTTGTCGCATCCCGGTCCAAAAATTGTCCCGTCTGTAACAAACTGTTCGCCAGACCTGTCAATATGAGAAAACATTTGCGGGAAGTGCACTCTACCAAAAAGAAATACTCGTGTGACATATGTGGTCATCATTTTACATCAACAAATCGTGTGACACAACACAAGAACTATTATCATTTTGGAGTTCGAAAAGAAATCAAACTCGAGCTGGAGTGTCATCATTGTGGCCAGAAATATCCCAGCAAATATCATTTGACCGAACATATGAACTCTCACACAGGCGTCAAGCCACATATTTGTACAATTTGTAAAAATACATATGCAACTGCTAAAGGGTTAAAGCGACATTTAAAACGCCATCAGTTTGAGGCAGGCGAGTTGCCAGTGGAGAGCATGTACCAATGCGATGTTTGTGACAAAATGTTTATCGACAATAGTGTAATGCTAAAACATCGTGACTGGGTTCACGGAGATAAATGTCACATATGCAAAATTTGTGGTGCCAAAATTAAAGGCAGTCTTAAAAAACATATGCTTTCACACACTGGAGAGAAACCATACTGTTGTGAAATATGTGGCAAGTCGATGCAAGGAAAATTGAAAGAACACATGTTAATTCATACGGGAGAAAGACCTTATGCGTGCGAAGTGTGTGGAAGTACTTTCAAAGATAAATGGTATTTGGGTGTACATATGCGTAAACACAATGGAGATAAACCATATGTATGCAATTTTTGTGGTCAAAGTTTTGCAGCTCGATCTGCATTTACGCTTCATCTTAAAAAACACTCCAAAATAGGACCAAAACTGGTTGAGTGTCAAATTTGTAGACAACGATTCCAAAATGAGTCCGAGCTTGCTTTGCATTATCCTGAACATTTTGGGGTAAACGCCTCGACGACTGTTCAGAACAGAGAAATTACTATTATCGCAGACAAACTGAATGATTATCCATTGACACGTACGTCTGAACAAAAGTTAACCTCAGGAGAGAAAAGTCAACCGAGCAACTCTTCCAAGTCGTGCTTGATTTGTTTACAAACATTCACTCGTGTTAAAGATATGAAGAACCATTTGAAAAGTGAACATAATCCGTCTAAACAGTGGCCGTGCGAGGTTTGTGGCAAAAAATACAAGTCTAAACGACTTGTTAAAGTGCACAAACAGAAGATACATTTGGGCCTGGGACAGGCGAAAGCGTACGAATGTAACTATTGTGGTAAAAGTTACGGCAATAAAATAAGTCTCATCGATCATTTGAGTACGCACACGGGAGAGAAACTGCACGTCTGTCATATTTGTAATAGAAATTTCTATTCGAGTGGAATTTTAAAACGTCATCTCCCAACACACGAGAAACTATCAAAGAATATAAACTCCACGGAAGAATTCGTAGAAACCGGCGTGCTCACTGTAGAAGATTGGGACGAACTTGTCAAGTCACGCGTCAAAAGTTGTCCACTCTGTAAAAAGTCTTACAATACAGCTAAAGATATGAGACGTCACATTTTGGAAGTTCATAGTAAAGTTAAAAAGTACAAATGTGATTTGTGCAGCAAGTTGTTTAAATCTTCGCGGCATGTGATGCAGCACAAACGACGCATTCATCAGGGCTTCAAGAAGGTCAACcatttcaattttgaatgttttcaTTGTGGAAATAAGTTCATTAGTAAAACACATCTTGCAGATCATATGACGTCACACACGGGAATCAAAAGACATATGTGTAGCATTTGTCCGAGCGCGTACACTTCAGCACGAGGATTGCGTAGACATAACAAGAATCATATGAGAGACTCAGGTGAACTGCGGGTTGATGATATGTACAAGTGTGATAAGTGCGGAAAAATGTTTATTGAACAGAGCGAAATGATGAAACATAGAGATTGGGTGCATGGAAACAAATGTTACTTGTGTAAAATCTGTGGCGCTCGTGTCAAAGGAAGCTTGAAAGTACACATGATGATTCACACGGGCGAACGACCTGTGTGTTGTCACATATGCGGGAAGAAGTTGCGAGGGAAATTGAAAGATCATATGTTAACTCATACGGGTGAAAGACCATTTGGATGTGAAATTTGTGGAAGTACGTTCaagtataaatattatttaggtGTACATATGAGAAAGCATAGTGGAGAAAGACCTTATGTGTGTAACTATTGTGGACATACGTTTGCAGCACGACCGGCATTTAATCTTCATATGAAGAAACACAAAGAACGTGGTCATTTAAAAACGATTGAATGCCAATTTTGTAAAAATCGATTTTCTAATGAAGATTTGTTAAATGCCCATTTGACCGAACATTTTGGACTCCCATTTCAAAACGTGCCGACTTAA
- Protein Sequence
- MRQVHPTEKDYPCRICDKSFPYKYAKYKHCKAVHKGLPTKPTFSCNICSTRFVVKDRYEDHMSLHDGIKRNVCDVCYAPFGTFAQLSAHKAIHYPKKKKTYQCKLCSMVFMCRSTYSMHKYKIHENKNWQCPICGKILVIYDRNHMRIHEKERKFVCETCGKRFNCPKYLKDHRLSHEAIKPYKCDFCEKRFTQRTPRSIHMRKFHTGENPLVKTYGQVLKSNQCPKCKKQFATRKSMKVHVANVHSCDAKFSCDICGKHFKANRYVHRHKERTHAQVFECHTCGTKHASKRVLGQHLLQHTPKGKIEKCDLCDLKYSSAKYLKRHRLKVHRVTEALEKISKNDPLDTGDYTMAEWKKLVASRSKNCPVCNKLFARPVNMRKHLREVHSTKKKYSCDICGHHFTSTNRVTQHKNYYHFGVRKEIKLELECHHCGQKYPSKYHLTEHMNSHTGVKPHICTICKNTYATAKGLKRHLKRHQFEAGELPVESMYQCDVCDKMFIDNSVMLKHRDWVHGDKCHICKICGAKIKGSLKKHMLSHTGEKPYCCEICGKSMQGKLKEHMLIHTGERPYACEVCGSTFKDKWYLGVHMRKHNGDKPYVCNFCGQSFAARSAFTLHLKKHSKIGPKLVECQICRQRFQNESELALHYPEHFGVNASTTVQNREITIIADKLNDYPLTRTSEQKLTSGEKSQPSNSSKSCLICLQTFTRVKDMKNHLKSEHNPSKQWPCEVCGKKYKSKRLVKVHKQKIHLGLGQAKAYECNYCGKSYGNKISLIDHLSTHTGEKLHVCHICNRNFYSSGILKRHLPTHEKLSKNINSTEEFVETGVLTVEDWDELVKSRVKSCPLCKKSYNTAKDMRRHILEVHSKVKKYKCDLCSKLFKSSRHVMQHKRRIHQGFKKVNHFNFECFHCGNKFISKTHLADHMTSHTGIKRHMCSICPSAYTSARGLRRHNKNHMRDSGELRVDDMYKCDKCGKMFIEQSEMMKHRDWVHGNKCYLCKICGARVKGSLKVHMMIHTGERPVCCHICGKKLRGKLKDHMLTHTGERPFGCEICGSTFKYKYYLGVHMRKHSGERPYVCNYCGHTFAARPAFNLHMKKHKERGHLKTIECQFCKNRFSNEDLLNAHLTEHFGLPFQNVPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -