Pven017501.1
Basic Information
- Insect
- Pachypsylla venusta
- Gene Symbol
- -
- Assembly
- GCA_012654025.1
- Location
- CM022883.1:5898023-5901820[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0013 0.12 13.1 2.6 2 21 179 198 178 199 0.93 2 22 0.00029 0.027 15.1 4.9 2 23 210 231 209 231 0.97 3 22 0.00013 0.012 16.2 0.7 2 23 238 259 237 259 0.97 4 22 3.7e-05 0.0034 17.9 4.3 1 23 265 287 265 288 0.96 5 22 3e-05 0.0028 18.2 4.8 1 23 294 316 294 316 0.98 6 22 3.8e-06 0.00035 21.0 3.5 1 23 322 344 322 344 0.98 7 22 9 8.4e+02 1.0 3.5 2 23 360 382 359 382 0.90 8 22 9.5e-06 0.00088 19.8 0.5 3 23 496 516 495 516 0.97 9 22 8.6e-05 0.0081 16.8 1.7 1 23 524 547 524 547 0.94 10 22 1.2e-06 0.00011 22.6 1.4 1 23 553 576 553 576 0.93 11 22 0.0001 0.0093 16.6 1.1 1 23 583 605 583 605 0.98 12 22 0.00014 0.013 16.1 2.7 1 23 610 632 610 632 0.98 13 22 1.6e-05 0.0015 19.1 1.6 2 23 644 666 643 666 0.94 14 22 2.2 2e+02 2.9 0.2 1 23 669 697 669 697 0.85 15 22 0.0033 0.31 11.8 0.5 2 23 707 728 706 728 0.96 16 22 0.002 0.18 12.5 0.4 2 23 803 825 802 825 0.94 17 22 3.2e-06 0.0003 21.3 1.6 2 23 849 871 848 871 0.96 18 22 1.6e-06 0.00015 22.2 2.9 2 23 924 946 923 946 0.96 19 22 1.4e-06 0.00013 22.4 1.2 2 23 982 1004 981 1004 0.96 20 22 5.3e-07 5e-05 23.7 1.0 2 23 1033 1055 1032 1055 0.95 21 22 6.4e-05 0.006 17.2 4.0 2 23 1083 1105 1082 1105 0.89 22 22 3.9e-08 3.6e-06 27.3 1.7 3 23 1190 1211 1188 1211 0.96
Sequence Information
- Coding Sequence
- atggaaattaatcaaattatttcgagtatcaaaagaagaaatgaacATTCAAATGACGACGATCATGAAAACaatctgaaaaaatataaaactgacAATGACGAAGTAACCATAACATTAATCAATGGTAACAATGGAGGGGTCGGTGATGCTGATGAAGATGACAAAGGAGGAGAATTGTTTATAGTTGAAGATGAAGACAGCAATGTTGTAAATGAAGATGGTGACAGTGAAGAAGATAAGGATCCTTTTCAGTGTTCAGATGAGGAAGGAGAAGGTAAGATAGGTTTAGCTAATATTGATGAGGACGATAGTGAAGATGACGATGAAGACGATGATGGGAGTAACGACACAGACGAAGAACCGGATTCCGAAGAAGATGTAGACAATAGCAATAACACAGATGAACTCATTGGAGATGGATTTGTAGGTGAAGAAAATGAATTCCATCAGGACAGTATCCTAAATGGAATCAACGAAATTATCGCACGTAATCTTGAGAATAATGACGACATCGGAGAATCGAATGATCTacaatgtaaaaaatgtttcaaaatatttgctcGCAAATCTTATTTACGTGGTCATCTTTGTTCTgaagatttaaaaattaataataaagctTTGAAATGTAAGTTTTGTAATAAGAGATATTCGCATAAAATTAATCTTCGATTACATTTGAAATTACATAATAATCCCAAACAATGGCAATGCAATAtatgtttgaaatatttgtcaTCAAGTAGTAGTCTTAAAGTTCATTTAAAAACACATTGTACAACtaaaccatttaaatgtgatCATTGTCCTTTAGCTTTCAATCAGAAAGTCCATTTAAATGATCATATTTTAAGTCATCATGAAAAAGTTCGACCTTATAGTTGTCATTTATGTAACAAAACTTACGTTTCTAAAAGTGTActtaaaaaacatttgaaaaaacattttggtatttttaaacATGAATGTGAAGTTTGTTcgaaacgattttttgaaaaatctgcATTGAAAAAACATATGAGAACACATTCGTCaaatttatctttaaataaattaaaaagtgatGAACCTATGCAGTGTCATAATTGTTtagtatattttcattttaaatataaattaattacacattttattttggaacaTGGTTTGAATCGAGTGAATACAAATTGTATTGGATGTCCATTGTGTGATATTCAATTTCATATTATCAAAAATGAGCCGGGGACAGAAGTTGAAGTTCAAGATTTTGAAGATAACTCTATGGTATCTGAATTAGGAAATGGTGTTAATTCAGATCCGTGCAGTGTTAAATCTACTAAAGGTATAGAATGGTCTTCACCTAATAATATGATATCACCTGATTATCCCACATACCTaaatgatcataaaaatatattgcctaaattaaaaataactccTAACAATGTTCATCTAATTGTAAGTGAACATATCAAATCTCATGAATATGTTGACAATAATATGTGTGAACTTTGCTATAAAATATTCGAAAATAACGAAAATCTTATGAGACATATGAAAGTACACGATggtcaagaaaaacaaagatttcAATGTGACTATTGCAGTAAAAGATTTATGACAAACGCAGAATTGCATCGACATACAGTTGTTGTACATAGTCAACTGAAACCTCACGAGTGCGAAATGTGTGGAAAGAATTTCTCgcaaagaaataatttaaagcGACATTTAGAAGAAGTACATCGAACAAATGGAATGACGTATGAATGTTATATTTGTCAGAAAATTCTTGCAACCAGTCATAGTTTAAAAAGACATTTATTAATACATAATGGACCTAAGTATACATGTCATGTATGTTCTCGAGAGTTTACACGAGTATATGAACTAAATCTCCACAAGAAAATTCATGAAACAGACGATGAAAAGGTTCTTGTTGATTTAAAATGTCCACATTGCAATAAATTATTCATTAAAAGATCGAACTTGAGAGCACACATTGCTAATAAACATATGGAATATTCATGTTTAGAATGTAAACTCTTAGGTGAAGTTGTACAATTTGATACCAAAAAATTGTtacttttacatttaaaatcaaGACACAAAGATATTGTTAGTAATGTTTATATGACATGTATGATATGTTATAGAACATTAGTAACAGAAACTGATTATAATCGTCATATGAGAGCGCATCAAAATGAAAACGAAGGAAACATGAATGAAATTGAAACCTTTGAaagtaatgaaatgaaaaataaatgtgcAAATAATGATGTAAATGAAGTTACTATTAAAAGAGAAAATGTAGAATTGTCAGATTTGGAAGACGATCATGAGGAGTCTAATGAAGAAGAATCTggagatgaagaagaagatggcgACGAGGCACCAATTGtgaaaactgaaaacaatatcCAATGTATGGCATGTAATCAAACATTCGATTCAAACGAATCATTGAAACAACACgtacaaaaaatacatttccctACAAGTGATTTATCAACGATTGAAAACAGTGTCGACATAACGCCTGTGGCCAAACAAATCATCCAATGTGACATCTGTTTCAAAACTTTCGCACGGAAAGATAGTTTAAAGAAACATACAAAAGTATTTCATACCTATATAACACCCGATGTAATTCAGACAagtcttattaaaaatgaacctaatgaagctgttgAGAAACCAGGAGGATTAAATATGTTAGAAGTTATACTTCAAGAAGGTGGTTCTGAATCTAATGATGATAATACTCACAGTGGTACAATCATACAATGTCAAATATGTAAGAAAACATTTACGCGTCGAGATAGTTTGAGAAAACATGTGAAACGATTCCATATTATTGGTGAACaagttaaaaaagaatttaatgAGGGTGAAATTAATAGAAATATGTTGGAAGTTATACTTAAAGAAAGTGGATTAGAAATTAAAAGTCGAATTCCATGTGATCTTTGTTACAAAACATTTACACGTCGAGATAGTTTAagaaaacatatgaaaatatttcacaCGAGAAGGAATGTATCAAATTTGAGCAGTCTAAATGAAACAATTAAAGGTAATGGAGAAACTCTGAGTGGTAATGATCGCATTCCATGCACACTCTGTGACAAATCATTTACGCGTAAAGATAGTTTAAAAAAGcatgttaaaatatttcatacacAAAATCAAACTCATGATAGTTTATTAGATATACTAGATGTTCGAAGTGGAGAGCATCAATTACCTATAGATACAATAAGATGTGAACTTTGTGACAAAACGTTTACACGTAAGGACAGTCTaagaaaacattgtaaaatCTTTCATAGTCGTAATGTATTTGCTAATAAAATGATGtataatgatgatgaaggagactatGGAGGAGGAAGTGGCGCAGACCAGTTTGATGACAATGAAGACGATGAACCAGTCGTACCAAGCGAATCGTTTTTAGAAGTTGTACTCAATGAAGCATCAACCAACCATCATCCGCAGCAAACACATCCACATCAGCAACTATCAcaccaaatacaacttcaacaTCATcaggaggaaaagaaaaaacatgaaattatttgtaaaatatgtaaTCGAAATTTTACtcgaaattataatttaaagaaaCATATGAGAACAGTTCACAAGATTGTTAATGAtgagcaatattattattttgattcctCGCTTGGTGCGTATGCGCAAGGTACCCAGATTGGTGCATTGGAGgaggaagaagatgatgaaaatGATCATTTTGGTAGTTTAAGTAATAGTATGTTGGAAGTTATTATTAAAGAAGAACAATGA
- Protein Sequence
- MEINQIISSIKRRNEHSNDDDHENNLKKYKTDNDEVTITLINGNNGGVGDADEDDKGGELFIVEDEDSNVVNEDGDSEEDKDPFQCSDEEGEGKIGLANIDEDDSEDDDEDDDGSNDTDEEPDSEEDVDNSNNTDELIGDGFVGEENEFHQDSILNGINEIIARNLENNDDIGESNDLQCKKCFKIFARKSYLRGHLCSEDLKINNKALKCKFCNKRYSHKINLRLHLKLHNNPKQWQCNICLKYLSSSSSLKVHLKTHCTTKPFKCDHCPLAFNQKVHLNDHILSHHEKVRPYSCHLCNKTYVSKSVLKKHLKKHFGIFKHECEVCSKRFFEKSALKKHMRTHSSNLSLNKLKSDEPMQCHNCLVYFHFKYKLITHFILEHGLNRVNTNCIGCPLCDIQFHIIKNEPGTEVEVQDFEDNSMVSELGNGVNSDPCSVKSTKGIEWSSPNNMISPDYPTYLNDHKNILPKLKITPNNVHLIVSEHIKSHEYVDNNMCELCYKIFENNENLMRHMKVHDGQEKQRFQCDYCSKRFMTNAELHRHTVVVHSQLKPHECEMCGKNFSQRNNLKRHLEEVHRTNGMTYECYICQKILATSHSLKRHLLIHNGPKYTCHVCSREFTRVYELNLHKKIHETDDEKVLVDLKCPHCNKLFIKRSNLRAHIANKHMEYSCLECKLLGEVVQFDTKKLLLLHLKSRHKDIVSNVYMTCMICYRTLVTETDYNRHMRAHQNENEGNMNEIETFESNEMKNKCANNDVNEVTIKRENVELSDLEDDHEESNEEESGDEEEDGDEAPIVKTENNIQCMACNQTFDSNESLKQHVQKIHFPTSDLSTIENSVDITPVAKQIIQCDICFKTFARKDSLKKHTKVFHTYITPDVIQTSLIKNEPNEAVEKPGGLNMLEVILQEGGSESNDDNTHSGTIIQCQICKKTFTRRDSLRKHVKRFHIIGEQVKKEFNEGEINRNMLEVILKESGLEIKSRIPCDLCYKTFTRRDSLRKHMKIFHTRRNVSNLSSLNETIKGNGETLSGNDRIPCTLCDKSFTRKDSLKKHVKIFHTQNQTHDSLLDILDVRSGEHQLPIDTIRCELCDKTFTRKDSLRKHCKIFHSRNVFANKMMYNDDEGDYGGGSGADQFDDNEDDEPVVPSESFLEVVLNEASTNHHPQQTHPHQQLSHQIQLQHHQEEKKKHEIICKICNRNFTRNYNLKKHMRTVHKIVNDEQYYYFDSSLGAYAQGTQIGALEEEEDDENDHFGSLSNSMLEVIIKEEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -