Pven011101.1
Basic Information
- Insect
- Pachypsylla venusta
- Gene Symbol
- Znf672
- Assembly
- GCA_012654025.1
- Location
- CM022874.1:3046686-3051060[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 9.8e-06 0.00091 19.7 0.8 1 23 10 33 10 33 0.97 2 22 0.00028 0.026 15.2 2.6 1 23 44 66 44 66 0.95 3 22 0.00018 0.017 15.8 0.6 1 23 72 95 72 95 0.97 4 22 0.023 2.1 9.2 1.8 2 21 106 125 105 126 0.83 5 22 0.00039 0.036 14.7 6.7 2 23 164 185 163 185 0.98 6 22 3.3e-05 0.003 18.1 6.4 1 23 194 216 194 216 0.98 7 22 5.3e-08 5e-06 26.9 0.7 1 23 222 245 222 245 0.98 8 22 5.9e-05 0.0055 17.3 0.4 1 23 256 278 256 278 0.98 9 22 0.6 56 4.7 4.7 1 21 284 304 284 307 0.95 10 22 0.0016 0.15 12.8 1.5 2 23 318 340 318 340 0.96 11 22 3.9e-05 0.0036 17.9 0.1 2 23 346 367 346 367 0.98 12 22 1.2e-06 0.00011 22.6 3.4 1 23 373 395 373 395 0.97 13 22 0.093 8.7 7.2 0.9 1 13 401 413 401 415 0.92 14 22 0.00016 0.015 15.9 0.8 3 23 453 473 452 473 0.98 15 22 3.7e-06 0.00035 21.1 1.7 2 23 486 507 485 507 0.96 16 22 1.9e-06 0.00018 22.0 1.2 2 23 514 536 513 536 0.95 17 22 0.00013 0.012 16.2 0.1 1 23 547 569 547 569 0.97 18 22 1.6e-05 0.0015 19.1 3.9 1 23 575 598 575 598 0.96 19 22 5.9e-05 0.0056 17.3 0.7 1 23 609 632 609 632 0.95 20 22 0.0001 0.0097 16.5 0.5 2 23 638 659 638 659 0.98 21 22 6.7e-08 6.2e-06 26.6 1.7 1 23 665 687 665 687 0.99 22 22 0.0003 0.028 15.0 4.3 1 23 693 716 693 716 0.96
Sequence Information
- Coding Sequence
- ATGATTTCACATTGCAATGATAAACCGTTTGAATGTGCGACGTGCCAGAAGACATTCAAAACGAACGATGAAGTCAAAAAACACGAACGGGTTGTCCATCAAGGCATGAAGTACAAAATTAACAACAAGTACTTGTGTACATTCTGTCCCAAGTCATTCTCTTATCATCAAGCTTTAAAGGATCATCAGTATATACATACGGGAGAAAAAATTCACCAATGTAAAATTTGTGAAGGACGATTTGCCACCAAAAGTAGTTTAGTGGGACATGTTCGCAGCGTTCACGAGGGTCGAAAAAGGCCAGCTAAACCATGCACATGTGAATTGTGTGGCAAAACGTTTGTTCGACGTCAAGGTCATTACGTTCATATGAAATTGTCACCTGAACAACAAACTCCTCCGTCCCCAGGTCATCGTAAATCGAGTGACACTGTCGACCAAGATGAATCGAAGAATGTTGATAAGGAAAGAGAACGATTGACTTTGAATAAGTGTGACGTATGTCACTTAACATTTAATTATAGACATTTGTATAGGAAACACATGAAGACGCACTCGTCGCAACAACAAGAATTACTCTATTCCTGTCACACGTGTGGCAGCTCATTTAGTCATAAGTTTAAACTGAATCGACATATGATTTCTCATAGTGACGAGAAACCGTTCACCTGTGACGTATGCGAGAAGAGCTTCAAGAGGAAAGATGAATTGGCCAAACACGTCCGAACCGTACATCAAGGTCTCAAATATCGTGcacataaaatatacaaatgcaAGTTGTGTCCAAAAGCCTACACCAGTTTCCCCGCTTTAGAAAATCATCAGTATGTCCACACGGGAGAGAAAGCACACAAGTGTCATTTGTGTGCTGACAGTTTTACATCTAAAATTGGTTTGAAGTATCATATTAAATGTGTACACAATGGCTATAAGAGACCTGCCATTAGTCGTCAGTGTGAAATGTGTGGCAAGAACTTCGTCTGTCAAGGATCCTATCGTGTTCATATGAAATACGTGCATGGGGATGGTAAACCAAAATGTCCAATTTGTGAAAAGGTTCTCAGTTCGAAAGAGTTTCTGGCCGTTCATATGAATATTCATACAGGAGAAAAACCGTTCTGTTGTGAATATTGTGGCCGATCATTCAGTTCTAATAATTATCTCAAAGTGCATGTTCGCAGTCACACGGGCGAGACGCCTTTTCAATGTATGTTCTGTCCAAAATCGTTTAAACAAAGATTGTCACCTGAACCGAGTAACACTGTCGATCGATTGTCACCTGAACCGAGTAACACTGTCGATCAAGATAAACCGAAAATGGTTGATAAGGAAAAGGATCGGGTTACTTTGAATGCGTGTGACTTGTGCGATTTAACATTTAATAGTATAAACTTGTATAGAAAACACATGAAGACCCACTCCTCCTCGCGACGTCAAAAGCAAGAAAAGCTCTTATCTTGTCAAAGTTGTGGCAAATCATTTAGtgatacatataaatttaatcgACATATGATTACCCATAGCAGAGAGAAATCTTGCATCTGTGACATTTGTACAAAGGGTTTCAGGACAAAAGATGAATTGACAAAGCACGTCCGCGTTGTACATCAAGGTCTGAAAAACCGTACGCCGAAAAAATACAATTGCAAGTTGTGTCCAAAAGCGTTCATCAGTTTGGTGGCTTTAGAAGATCATCAGTATGTCCACACGGGAGAGAAAGCACACAAGTGTGATGTGTGTGGTGACAGTTTTACAAGTAAATACAATTTGACGCATCACATCAAATATGTCCACAATGGCTGTAAGAGGCCCACCAAAGGTCATCATATATGTGAAATATGTGGCAAGAATTTTGTATCTAAGGGAACCTATCTTGGTCATATGAAATACGTACATGGAGATGGAAAACCAAAATGTCCCATTTGTGAAAAGGTTCTCTGTTCGAAAGAATTTTTGGCCATTCATATGAATATTCATACGGGGGAGAAGCCTTACAGTTGCGAATATTGCGGCCGATCCTTCAGTTCGAATCAGTATCTTAAGGATCATATTCGGAGACACACGGGTGAGAGTCCTTTTCAATGTACGTTATGTTCAAAATCATTTAAACAAAGATCTGCGCGAACACAGCACTACAAGAATAAACATCCTGGCGTTCAACCCAAACCAAGTTTACAGGGGTTGAACACAaacgatgaaaaaaaatga
- Protein Sequence
- MISHCNDKPFECATCQKTFKTNDEVKKHERVVHQGMKYKINNKYLCTFCPKSFSYHQALKDHQYIHTGEKIHQCKICEGRFATKSSLVGHVRSVHEGRKRPAKPCTCELCGKTFVRRQGHYVHMKLSPEQQTPPSPGHRKSSDTVDQDESKNVDKERERLTLNKCDVCHLTFNYRHLYRKHMKTHSSQQQELLYSCHTCGSSFSHKFKLNRHMISHSDEKPFTCDVCEKSFKRKDELAKHVRTVHQGLKYRAHKIYKCKLCPKAYTSFPALENHQYVHTGEKAHKCHLCADSFTSKIGLKYHIKCVHNGYKRPAISRQCEMCGKNFVCQGSYRVHMKYVHGDGKPKCPICEKVLSSKEFLAVHMNIHTGEKPFCCEYCGRSFSSNNYLKVHVRSHTGETPFQCMFCPKSFKQRLSPEPSNTVDRLSPEPSNTVDQDKPKMVDKEKDRVTLNACDLCDLTFNSINLYRKHMKTHSSSRRQKQEKLLSCQSCGKSFSDTYKFNRHMITHSREKSCICDICTKGFRTKDELTKHVRVVHQGLKNRTPKKYNCKLCPKAFISLVALEDHQYVHTGEKAHKCDVCGDSFTSKYNLTHHIKYVHNGCKRPTKGHHICEICGKNFVSKGTYLGHMKYVHGDGKPKCPICEKVLCSKEFLAIHMNIHTGEKPYSCEYCGRSFSSNQYLKDHIRRHTGESPFQCTLCSKSFKQRSARTQHYKNKHPGVQPKPSLQGLNTNDEKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -