Basic Information

Insect: Pachypsylla venusta
Gene Symbol: -
Assembly: GCA_012654025.1
Location: CM022874.1:3011153-3025199[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 3.3e-07 3.1e-05 24.4 4.3 1 23 85 108 85 108 0.98

2 27 0.0052 0.49 11.2 2.1 2 21 114 133 113 134 0.92

3 27 2.2 2.1e+02 2.9 1.9 1 21 149 169 149 170 0.90

4 27 0.0014 0.13 12.9 0.4 1 23 176 198 176 198 0.97

5 27 2.5 2.3e+02 2.7 2.0 1 23 206 229 206 229 0.94

6 27 0.00012 0.011 16.3 1.5 3 23 244 264 244 264 0.98

7 27 2.9e-05 0.0027 18.2 2.4 1 23 270 293 270 293 0.94

8 27 2.6e-06 0.00025 21.5 2.3 2 23 306 328 305 328 0.96

9 27 0.0025 0.23 12.2 0.1 2 23 334 355 333 355 0.97

10 27 3.5e-07 3.3e-05 24.3 0.2 2 23 362 383 361 383 0.97

11 27 3.1e-05 0.0029 18.2 5.4 1 23 389 411 389 412 0.95

12 27 0.00092 0.086 13.5 0.9 1 23 453 475 453 475 0.97

13 27 0.56 52 4.8 0.1 3 23 483 504 482 504 0.96

14 27 0.00013 0.012 16.2 1.3 1 23 510 532 510 532 0.99

15 27 0.029 2.7 8.8 0.8 3 23 540 561 539 561 0.88

16 27 9e-06 0.00084 19.9 2.6 1 23 566 588 566 588 0.98

17 27 0.00017 0.016 15.8 0.4 1 17 597 613 597 614 0.94

18 27 1.2e-05 0.0011 19.5 5.2 1 23 638 660 638 660 0.98

19 27 0.00052 0.049 14.3 0.6 1 23 666 688 666 688 0.97

20 27 0.00033 0.03 14.9 1.4 1 23 694 716 694 716 0.99

21 27 0.22 21 6.0 0.9 3 23 724 745 723 745 0.92

22 27 0.012 1.2 10.0 3.5 1 23 750 772 750 772 0.98

23 27 1.4e-05 0.0013 19.2 3.6 1 23 781 804 781 804 0.98

24 27 2.3e-05 0.0022 18.6 5.5 1 23 809 831 809 831 0.99

25 27 5.1e-06 0.00048 20.6 0.1 2 23 838 859 838 859 0.97

26 27 1.1e-06 0.0001 22.7 0.3 1 23 865 887 865 887 0.98

27 27 0.0054 0.51 11.1 6.9 1 23 893 915 893 916 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	3.3e-07	3.1e-05	24.4	4.3	1	23	85	108	85	108	0.98
2	27	0.0052	0.49	11.2	2.1	2	21	114	133	113	134	0.92
3	27	2.2	2.1e+02	2.9	1.9	1	21	149	169	149	170	0.90
4	27	0.0014	0.13	12.9	0.4	1	23	176	198	176	198	0.97
5	27	2.5	2.3e+02	2.7	2.0	1	23	206	229	206	229	0.94
6	27	0.00012	0.011	16.3	1.5	3	23	244	264	244	264	0.98
7	27	2.9e-05	0.0027	18.2	2.4	1	23	270	293	270	293	0.94
8	27	2.6e-06	0.00025	21.5	2.3	2	23	306	328	305	328	0.96
9	27	0.0025	0.23	12.2	0.1	2	23	334	355	333	355	0.97
10	27	3.5e-07	3.3e-05	24.3	0.2	2	23	362	383	361	383	0.97
11	27	3.1e-05	0.0029	18.2	5.4	1	23	389	411	389	412	0.95
12	27	0.00092	0.086	13.5	0.9	1	23	453	475	453	475	0.97
13	27	0.56	52	4.8	0.1	3	23	483	504	482	504	0.96
14	27	0.00013	0.012	16.2	1.3	1	23	510	532	510	532	0.99
15	27	0.029	2.7	8.8	0.8	3	23	540	561	539	561	0.88
16	27	9e-06	0.00084	19.9	2.6	1	23	566	588	566	588	0.98
17	27	0.00017	0.016	15.8	0.4	1	17	597	613	597	614	0.94
18	27	1.2e-05	0.0011	19.5	5.2	1	23	638	660	638	660	0.98
19	27	0.00052	0.049	14.3	0.6	1	23	666	688	666	688	0.97
20	27	0.00033	0.03	14.9	1.4	1	23	694	716	694	716	0.99
21	27	0.22	21	6.0	0.9	3	23	724	745	723	745	0.92
22	27	0.012	1.2	10.0	3.5	1	23	750	772	750	772	0.98
23	27	1.4e-05	0.0013	19.2	3.6	1	23	781	804	781	804	0.98
24	27	2.3e-05	0.0022	18.6	5.5	1	23	809	831	809	831	0.99
25	27	5.1e-06	0.00048	20.6	0.1	2	23	838	859	838	859	0.97
26	27	1.1e-06	0.0001	22.7	0.3	1	23	865	887	865	887	0.98
27	27	0.0054	0.51	11.1	6.9	1	23	893	915	893	916	0.96

Sequence Information

Coding Sequence: ATGGACTCTGTTTTCATTGTGTCTTTCAGAGTGGCTAAACAAAAACCCGAGAAGACAACCGTAGACACAGATAACGGTGAGCCTATAGTTTGCACTTATGACTTACGTTTGATCCGAAGCGTGAATCAGTCGTCCAAACTGCAAGGTGCGCTTGATATAGACGAAATGAAATGCAAGTCTTGTGGTCTCGTGGAAGAATCGGAAACAGCGCTCTATATTCACTCCTGGGATTGCGCCAAGCGAAACAAGATATACAAATGTTCAATGTGTGACAAGGAATTCAAAACGAAAAACACGTTGAAGAAGCACATGCGCAACAAACATTTGAAACGACGACTCAGTTGTCACATCTGCAAGAAAACGTTCGGAACGGAATATTCGAGAAAGAAACATCGAGAACGGTGTCAGAAACGACACCGAAATTTGGCGAACGTTACAAACGAATATAAGTGTGAATTATGTGGACATGAAGAATCGTCATGCGTTGAATTTATGAATCATACACGCTACTGTGAGGGACAATTCTATGATTGTGACATTTGCAGTGAGAGATTCTACAAGAAGAACGCTATCCGGGAACATATGTCCGTACACAACGTACGGAAAGAGAAACATTTTACGTGCGACATTTGTCAGGGCAAGTTTCTTTTGCGACGTCGACTGCATCTTCATATACGTCggattcatattttaaaaataggcCATGAACCGAATCGAAAAAAACATGGCTGTTCATCGTGTCCGAAAGTTTTCCGATCTAAAACGTCACTTTTGACGCATCTTATGAAACATGAAGCACAGGCGCCACACATTTGTCAAGTGTGTGGTAAGAAATATTCGAATCGGGGGAATATGAACCGACACATTGCCATTTGTCACGAGAGAAAGTTTGTTGATCGAAGTGCGATGCGAGTTCAGTGTGAAAAGTGCGGCAAATCGTACACACAAATGCGACATCTCAACAGACACATGAGTATACAACATGGCGAAGGGAAACTCAAGTGTCCCATCTGTGGCAAACTGCTGGCCGAGAAGAAAGGTTTTGACATACATATGAATACACATTCGGGTATCAAACCTTGGACGTGCGAGATGTGTGGCAAAGGATTTAGTACAAAagattatttgaaaattcatgTTCGGGTTCACACGGGGGAGTCGCCTCATAAATGTCATCTTTGTCCTAAAGCGTATAAACAAAAGTCAGCGCTCACTGCGCATTACAAAGCGCATCATCCTGGCGCCATGATGATGACATTACTACAAGTACCCCTCTTTCAATTTTCTGCTTCCAGAATTGAAAAAGTCATCAAGAAAAGAAGTCGTCACTCAAAGCAGACAGATAATCTTGCTGTATACGAGTGTAATGTATGCTTGAACACTTTTACATCTTTGTCAACGCTCAAAATACATTCAAAACTACATTCTCGAAGTAAAAGCTCAGCTTGTAATATTTGTCTCGAAGAGTTTGGTTCAATAAGTGAGAAAGAACAACACGTAATGACCAAACATAGTTCTGGCGGGGAATATAAATGTAACGAATGTTCTTATACAGCTAAGAAGCTTATCTATCTTCAGGCTCATATGAGAAAACATAGAAAAGAATATTCCGCTTATTGTGGTGTTTGTAAGGAAGGCTTCTTTAGAAAAGATAAACTGGAAACGCATAATATACAGAAACATAACGCTCAGCCTTACCAGTGTGAAGAATGCAAGAAAGTATTCAGTTCAAAGAATTCTCTGTCTAGTCATAATAAGAAACATTTACCGCCAGAGTTGAGACTCCATTATCAATGTGAAACCTGTGGCAAATCGTTCAATaataaagaaacgttaagAATTGAGAATGGcggcaaagaaaaaaagaaaagatcccGAAAATCAACGCCCCAGAAATTACCAAGCGGTCCGTTCAAATGCAATCATTGTGACAAAGAATTTGAAAATCGACGATCGTTGAAAAGACACGAAAAGAATCATACGCAAGAGAAAACGTTCCCCTGTACGgtttgtttgaaaatgttcaaaaccAAAGCCCAACGAGAAGAACACATCTCGTCTCATGTAACAGACAGTGAATTCAAATGTGACGAGTGTCCATATGTGGCCAAACGAATCAAGTATCTTCGTTATCATATGAAAAAACATCGGAAAGAATATTCGGCTTTCTGTGAATCTTGTCAGGAAGGTTTCTTTAGTCGGGATAAATTGGAGACGCATAATATATCCAAACATGGCGCCCAACCTTATCAATGCGAGATATGCAAGAAACTGTTCCTCTCCAAATATTCTTTGTTTACtcacaacaaaaaacatttgcCTTTAGAAGAGCGACTTCACTATCAGTGTGAACTTTGTGGAAAATCATTCAACAATAAACAGACGTTCAGATATCACAAGAACACCACACATTTGGGGATCAAATTTGAGTGTGAAGTTTGCCACAGAAAACTGAGTACCAAGAATCATCTCCGACTCCATATGAGAACCCATACAAATGAACGACCCGCCGTATGTTCCTACTGCGGTAAAGGCTTTAGACGAGGTGACGCTCTTACTGAACATTTACGTATTCATACTGGTCAACGTCCCTATGTGTGTGAGGTATGTGGTAAAGGGTTTACTCAGAAACAAGCCCTTAACACTCATAAACGTGGACACACTGGAGAAATACCATACCATTGTGAATTCTGTTCAGAGCGTTTCTCAACCAAAGCATTGGTTCGCCATCACGTGCGGTCGCATCATTCGCGTCTTGGGTTGAACTTATTGGATCACGAGCTTTCAATGATAACATCCAAATGA
Protein Sequence: MDSVFIVSFRVAKQKPEKTTVDTDNGEPIVCTYDLRLIRSVNQSSKLQGALDIDEMKCKSCGLVEESETALYIHSWDCAKRNKIYKCSMCDKEFKTKNTLKKHMRNKHLKRRLSCHICKKTFGTEYSRKKHRERCQKRHRNLANVTNEYKCELCGHEESSCVEFMNHTRYCEGQFYDCDICSERFYKKNAIREHMSVHNVRKEKHFTCDICQGKFLLRRRLHLHIRRIHILKIGHEPNRKKHGCSSCPKVFRSKTSLLTHLMKHEAQAPHICQVCGKKYSNRGNMNRHIAICHERKFVDRSAMRVQCEKCGKSYTQMRHLNRHMSIQHGEGKLKCPICGKLLAEKKGFDIHMNTHSGIKPWTCEMCGKGFSTKDYLKIHVRVHTGESPHKCHLCPKAYKQKSALTAHYKAHHPGAMMMTLLQVPLFQFSASRIEKVIKKRSRHSKQTDNLAVYECNVCLNTFTSLSTLKIHSKLHSRSKSSACNICLEEFGSISEKEQHVMTKHSSGGEYKCNECSYTAKKLIYLQAHMRKHRKEYSAYCGVCKEGFFRKDKLETHNIQKHNAQPYQCEECKKVFSSKNSLSSHNKKHLPPELRLHYQCETCGKSFNNKETLRIENGGKEKKKRSRKSTPQKLPSGPFKCNHCDKEFENRRSLKRHEKNHTQEKTFPCTVCLKMFKTKAQREEHISSHVTDSEFKCDECPYVAKRIKYLRYHMKKHRKEYSAFCESCQEGFFSRDKLETHNISKHGAQPYQCEICKKLFLSKYSLFTHNKKHLPLEERLHYQCELCGKSFNNKQTFRYHKNTTHLGIKFECEVCHRKLSTKNHLRLHMRTHTNERPAVCSYCGKGFRRGDALTEHLRIHTGQRPYVCEVCGKGFTQKQALNTHKRGHTGEIPYHCEFCSERFSTKALVRHHVRSHHSRLGLNLLDHELSMITSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -