Basic Information

Insect: Pachypsylla venusta
Gene Symbol: -
Assembly: GCA_012654025.1
Location: CM022882.1:6650999-6656443[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 37 0.037 3.5 8.5 2.4 1 23 123 147 123 147 0.91

2 37 8.1 7.6e+02 1.1 0.2 3 23 288 309 286 309 0.88

3 37 2.3 2.2e+02 2.8 0.1 2 23 315 336 314 336 0.88

4 37 5.9 5.5e+02 1.5 0.5 1 9 410 418 410 432 0.82

5 37 0.043 4 8.3 0.7 2 23 465 486 464 486 0.96

6 37 9.5 8.9e+02 0.9 1.0 2 23 492 514 491 514 0.88

7 37 0.00035 0.032 14.9 0.6 3 23 521 542 519 542 0.92

8 37 0.17 16 6.4 0.4 1 23 546 568 546 568 0.98

9 37 2.4 2.2e+02 2.8 5.5 1 23 573 596 573 596 0.96

10 37 0.00024 0.022 15.4 1.5 2 23 601 623 600 623 0.94

11 37 0.0028 0.26 12.0 2.3 1 23 629 651 629 651 0.98

12 37 0.032 3 8.7 3.3 1 23 657 679 657 679 0.96

13 37 6.5e-05 0.0061 17.2 0.6 1 23 685 708 685 708 0.98

14 37 6.4e-05 0.006 17.2 1.2 1 23 714 737 714 737 0.93

15 37 3.1e-05 0.0029 18.2 1.7 1 23 743 765 743 765 0.98

16 37 6.5e-05 0.0061 17.2 0.2 1 23 771 794 771 794 0.97

17 37 1.6e-05 0.0015 19.1 0.5 1 23 800 823 800 823 0.98

18 37 4.9e-06 0.00046 20.7 0.1 1 23 829 851 829 851 0.98

19 37 0.0002 0.019 15.6 0.7 1 23 857 879 857 879 0.98

20 37 0.00011 0.011 16.4 0.3 1 23 885 907 885 907 0.98

21 37 6.2e-07 5.8e-05 23.5 1.0 1 23 913 936 913 936 0.97

22 37 0.00032 0.03 15.0 0.2 1 23 942 964 942 964 0.98

23 37 0.00022 0.02 15.5 0.1 1 23 970 992 970 992 0.93

24 37 1.4e-06 0.00013 22.4 0.3 1 23 998 1021 998 1021 0.97

25 37 8e-05 0.0075 16.9 0.2 1 23 1027 1049 1027 1049 0.98

26 37 1.4e-05 0.0013 19.3 4.1 1 23 1055 1077 1055 1077 0.98

27 37 9.2 8.6e+02 0.9 0.1 12 23 1083 1094 1082 1094 0.90

28 37 4.7e-06 0.00044 20.8 1.6 1 23 1100 1123 1100 1123 0.97

29 37 4.2e-06 0.00039 20.9 0.4 1 23 1129 1151 1129 1151 0.98

30 37 6.2e-06 0.00058 20.4 1.3 1 23 1157 1179 1157 1179 0.98

31 37 0.0015 0.14 12.9 0.5 1 23 1185 1207 1185 1207 0.98

32 37 4e-05 0.0037 17.8 0.4 1 23 1213 1236 1213 1236 0.97

33 37 0.073 6.8 7.6 4.4 1 23 1266 1288 1266 1288 0.95

34 37 9e-05 0.0084 16.7 2.4 2 23 1295 1316 1294 1316 0.97

35 37 0.5 47 4.9 0.2 1 23 1322 1345 1322 1345 0.89

36 37 0.001 0.096 13.4 2.1 2 23 1429 1451 1428 1451 0.93

37 37 1.1e-05 0.0011 19.5 2.0 1 23 1457 1480 1457 1480 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	37	0.037	3.5	8.5	2.4	1	23	123	147	123	147	0.91
2	37	8.1	7.6e+02	1.1	0.2	3	23	288	309	286	309	0.88
3	37	2.3	2.2e+02	2.8	0.1	2	23	315	336	314	336	0.88
4	37	5.9	5.5e+02	1.5	0.5	1	9	410	418	410	432	0.82
5	37	0.043	4	8.3	0.7	2	23	465	486	464	486	0.96
6	37	9.5	8.9e+02	0.9	1.0	2	23	492	514	491	514	0.88
7	37	0.00035	0.032	14.9	0.6	3	23	521	542	519	542	0.92
8	37	0.17	16	6.4	0.4	1	23	546	568	546	568	0.98
9	37	2.4	2.2e+02	2.8	5.5	1	23	573	596	573	596	0.96
10	37	0.00024	0.022	15.4	1.5	2	23	601	623	600	623	0.94
11	37	0.0028	0.26	12.0	2.3	1	23	629	651	629	651	0.98
12	37	0.032	3	8.7	3.3	1	23	657	679	657	679	0.96
13	37	6.5e-05	0.0061	17.2	0.6	1	23	685	708	685	708	0.98
14	37	6.4e-05	0.006	17.2	1.2	1	23	714	737	714	737	0.93
15	37	3.1e-05	0.0029	18.2	1.7	1	23	743	765	743	765	0.98
16	37	6.5e-05	0.0061	17.2	0.2	1	23	771	794	771	794	0.97
17	37	1.6e-05	0.0015	19.1	0.5	1	23	800	823	800	823	0.98
18	37	4.9e-06	0.00046	20.7	0.1	1	23	829	851	829	851	0.98
19	37	0.0002	0.019	15.6	0.7	1	23	857	879	857	879	0.98
20	37	0.00011	0.011	16.4	0.3	1	23	885	907	885	907	0.98
21	37	6.2e-07	5.8e-05	23.5	1.0	1	23	913	936	913	936	0.97
22	37	0.00032	0.03	15.0	0.2	1	23	942	964	942	964	0.98
23	37	0.00022	0.02	15.5	0.1	1	23	970	992	970	992	0.93
24	37	1.4e-06	0.00013	22.4	0.3	1	23	998	1021	998	1021	0.97
25	37	8e-05	0.0075	16.9	0.2	1	23	1027	1049	1027	1049	0.98
26	37	1.4e-05	0.0013	19.3	4.1	1	23	1055	1077	1055	1077	0.98
27	37	9.2	8.6e+02	0.9	0.1	12	23	1083	1094	1082	1094	0.90
28	37	4.7e-06	0.00044	20.8	1.6	1	23	1100	1123	1100	1123	0.97
29	37	4.2e-06	0.00039	20.9	0.4	1	23	1129	1151	1129	1151	0.98
30	37	6.2e-06	0.00058	20.4	1.3	1	23	1157	1179	1157	1179	0.98
31	37	0.0015	0.14	12.9	0.5	1	23	1185	1207	1185	1207	0.98
32	37	4e-05	0.0037	17.8	0.4	1	23	1213	1236	1213	1236	0.97
33	37	0.073	6.8	7.6	4.4	1	23	1266	1288	1266	1288	0.95
34	37	9e-05	0.0084	16.7	2.4	2	23	1295	1316	1294	1316	0.97
35	37	0.5	47	4.9	0.2	1	23	1322	1345	1322	1345	0.89
36	37	0.001	0.096	13.4	2.1	2	23	1429	1451	1428	1451	0.93
37	37	1.1e-05	0.0011	19.5	2.0	1	23	1457	1480	1457	1480	0.96

Sequence Information

Coding Sequence: atgGAATACTCTCAtaagaatatttcaaaacaatCTATAAATGAACCACATGTAAACGAATCGTTGACTAAGAATATGAACGTAGTTGAAAAACAAGAAAGTATAATTGAAAATAGTGACATACATATTAACGAAACACAGGAGTTATTGAATGACACTATTAATACAGACAATAATGAACAACAGGGAAATGACAATATTAACAAACCTATGACTGACATCATTGATAATGACGATACACATGACTATGAAGACACTCCGatgaatgatgatgatgatgacgacaATTTAGACAAAACATTAACTGAAGAAAAAGATGACGAACAAAATACAATGATACCTAAACTAATTGTACACAATGAAGTATACGAATGTAAAACATGCGATGAAATATGCATCTCTAAACTAGATTTTAAAACACATTTAATGTCTacgaaacataaaattaataaaagtaagTCGAGAAGTAAAAAGTTGTCgttattaacgaaaaaaattcaagaagaaaaaatgaataatgaaaaacaGCAACTAGAAcaattaaaacaacaacaagaaagtGTTAGAAATAATGAACTAAATTCAATTGAATTTGGATCTACAAGTAATTATACTGTCTCTGATGATGGTGAAAataaacttataaaacgtattaaatttaatatacctaaaaataaattagttaATATTGGAAATCCATCTCGGAAATATCATAGAAAAAAGAAACCAATTGTGATgagcaaaaaaataaacgataAAAATAACAGTTCAGTTGATGAAACTGGTTCCAATTTAGATGTGTTTGTTCTTCTTGATAAAATTAGTATGAATGTACATGACAATATTAAAACTAAATTGGATTGTACATTCTGTGATTTTAAAGCGAAAACTATGAACGAATTAGACGAGCATATTGTTGAAAATCATGAAAATAAAGATCTCAAATGTACAATTTGTGATTATTTTGCTGTTTCGATAAGTGATAAAGAGAGTCACGCTGCCAGTCATGCCGGAACTAATATTGgtgattttcttaaaataacaATGAGCGGTGATACCGAGGCTGACCAAATGAAATGTGCGTATTGTGGTCACATTTCTGAAACAAATCAAGAAAgagatttacattttttgaatcattttaatttgaaatgtacTGAATGTGGTCATATAAATCGATCGattgaagaaaaagaagcacatGATAAATTACATCAAGAAACTAAATTCAAATGTAAAACGTGTGACtatgttgctgttgatgataatgataaatGGTATCATGAGTATGGCCATAAAATGGAGAAACTGAAGTGTATACAATGTAATTTTACCCCTGGgaattatattgaatatgatgCACATGTAGCAATGCATGAAGCCGAagaattaaaatgtaatttatgtGATTATGTTGCGATTACAAAGAGAGATATAagaaaacataaagaaaaacACGAGAGAGAtacattgaaatgtaaaaaatgttcgTTTCAAACTTTAGAACAAACTGAATTAAATGAGCATATTGATAAAAATCATAAACAACTCTTAATTAATTGTGAAACATGTGATGAAACATTCAGATCGAAACCAGAACTTTCCAAACATAGGcttgaaaaacataaacaaagatttaaATGTGAACTATGTGAATTTGATTCGGCCGATAAATGGTATACAATCAAACATATGGAATCGCATGAAAACAATATGTTTCATTGTAAATTAtgtaattttgaaacaaaatatgctaaaaaatataaattacatcTTCAAAGTAAAcacaaaaaagaattaaaatgtaaaatttgtgaGAAAACATTTAAATGGAAATCTGCGTATAAAAAACATATGGAATATGAACATGTATCAAATGAAAGATTTTCGTGTGAGCAATGTTCGTACACGTGTACTAAGATAACTTATTTGAAAGCTCATATGATCGTACACTCGGAAGATAAACCGTTTGCTTGTCATTTATGTAGTTATAAAACGAAAAAGAATGAATATTTAAGACAACATTTGGTTTCTCATTCAAGTGATAGACCCTACCAATGTGATCAATGTGAAGCTACATTTAAAACAATCAGTACTTTAACATCACATTTAACTACTGTTCATAATGAAGAAAGACCATTTAAATGTGACGTGTGTGAACAATCATTTAAATCtgttcataatttaaaaaagcatGCTGATATTGTACATACAGAGGAGAGACCATTTAAATGTGATATTTGTGAAGCTAAATTTAAGACGAGTAATTACTTGAAAACTCACATGTTTGTTCATACTGAAGAAAGACCATTTAAATGTGACGTTTGTGAAgcttcatttaaaaatattccttcaTTAACTAAACATATAAATGTAACTCATACAGAAGAGCGACCTTATAAATGTGAAATTTGTGAATATACAACGAAAACAGCTGTCTATTTGAGAAATCACATGTTAACAGTTCACTCCGAAGAGAGACCATATAAATGTGAAATTTGTGAGTCAGCTTTTAAACAAGCTGGAAATTTAAAGTCACATATGATTGTACATACGGAAGAAAGACCTTTTCAATGTGAAATTTGTGAGGTGTCTACTAAATCTTTGCACAGTCTTCGTAGTCATATGGCAGTACACACAGATGAAAGACCTTTTGAATGTGAACAGTgttctttgaaatttaaaacggctCCCGCTTTGAGAACACACTTAATTACTCATACAGAAGAACGACCGTTTCGTTGTGAAATATGTGATTTAAGTTTTAAAACGAATTCGTACTTGCAAAAACATACAAATGTTGTCCACTCAGAAGAACGACCTTTCCAATGTGACTCTTGTGAAAGTGCATTCAAAACTGTTGGTAATCTAAGAACACACATGGCTGTTCATACAGATGAGCGTCCATTTGAATGTGAATTGTGTGGCGTGAAATTTAAAACTGCAGCAAGCTTAAAAACACATGGAATAGCTCATACAGTGGACCGGCCATTCCCTTGTGAAATATGTGACTTGAGTTTTAAAACGAatcaatatttacaaaaacataTTAATGTTGTTCATAATGAAGAAAGACCTTTCCAGTGTGACTCTTGTGAGAGTTCTTTCAAAACTATTGGTAATTTAAAAGCCCATATGATTGTACACACAGATGAGCGACCTTTTAAATGTGATTATTGTGAATATACATGTAAAACTTCAAGttatttgaaaaatcatatGATTGTCCATACAGAAGAAAGACCATATAAATCAAGTTTACGAACACATCTAATATCTCACACAGAGGAGAGACCTTTTTCTTGTGAAATATGtgatttgagtttcaaaacacATACATACTTACAGAAACATATAAATGTAGTTCACTCGGATGAAAGACCATATAAATGTAATTCTTGTGATAGTACATTTAAAACGCCGGGTAATTTAAAGGCACATTTGCTCGTACATACTGAAGAAAGACCGTTCGAATGTGAATATTGTGAATATAGTTGTAAAACAGCGGGCAATTTACGGTCGCATATGTTAGTTCATACGGATGAACGACCTTTTGAATGCGAATTTtgtgttttcaaatttaaaactgCTGCAGGTTTAAGAACTCATTTAGTTACACACACAGAAGAAAGACCATTTAAATGTGAAATTTGTGAtttaacatttaaattaaatacgTATTTACAATCACATATTTCTGTTGTTCATTCGGACGAGAGACCTTATAAATGTGATTATTGTGAAAGTAATTTAAAATCACATTTTATGAATATTCATTCgaaagaagaaacaaaatacAATTGTGATCAGTGCGATAGAAAATGTCGTACGCGAATGgaatataaaattcattcaaCATCACATCAGACAGATTTACCTTTACAATGTGGACTTTGTGAATATAGATGTTCTCGGGAATCGAATCTACGTAGTCATATGTCAACACATTCGGGAGGAAGTTATTTTATGTGTGAACATTGTGATTTTAATGCTAATAATGAAATGGAATTAGAAGACCATGTGGTTAATTTACATTACAGACCAACACAACCTGTTAAGccgaagaaagaaaaatcttcgACGACGACGGGTAAAACAAGTGTTTTAAAACAACAAATTAATAGTCGACATTCAACTATAAATAGTCATTTCTTAGCAAGATTTGTGATTGGTAATAAAAATGCAAACGCAATGCGAACAGAACCAAATAGCAGCAGCGGCGGCGGAGGAGGAGGCCAaaagaagaaaagtaaaatagaaaaggaaaaagTGTTGGAACATTTGACATGTGATCAATGTTCaagtgaatttaaaaattctgcAAATTTAAAACGACATATTCATGAAAAACATGGCGGAGAACCTGATTTTCCTTGTAATTTGtgtgaaaaaaagttttatagaAAAGAACAATTGAAAAATCATCAACTTAGTTCTCATAGTATTGAAATTGTAACTGGATAA
Protein Sequence: MEYSHKNISKQSINEPHVNESLTKNMNVVEKQESIIENSDIHINETQELLNDTINTDNNEQQGNDNINKPMTDIIDNDDTHDYEDTPMNDDDDDDNLDKTLTEEKDDEQNTMIPKLIVHNEVYECKTCDEICISKLDFKTHLMSTKHKINKSKSRSKKLSLLTKKIQEEKMNNEKQQLEQLKQQQESVRNNELNSIEFGSTSNYTVSDDGENKLIKRIKFNIPKNKLVNIGNPSRKYHRKKKPIVMSKKINDKNNSSVDETGSNLDVFVLLDKISMNVHDNIKTKLDCTFCDFKAKTMNELDEHIVENHENKDLKCTICDYFAVSISDKESHAASHAGTNIGDFLKITMSGDTEADQMKCAYCGHISETNQERDLHFLNHFNLKCTECGHINRSIEEKEAHDKLHQETKFKCKTCDYVAVDDNDKWYHEYGHKMEKLKCIQCNFTPGNYIEYDAHVAMHEAEELKCNLCDYVAITKRDIRKHKEKHERDTLKCKKCSFQTLEQTELNEHIDKNHKQLLINCETCDETFRSKPELSKHRLEKHKQRFKCELCEFDSADKWYTIKHMESHENNMFHCKLCNFETKYAKKYKLHLQSKHKKELKCKICEKTFKWKSAYKKHMEYEHVSNERFSCEQCSYTCTKITYLKAHMIVHSEDKPFACHLCSYKTKKNEYLRQHLVSHSSDRPYQCDQCEATFKTISTLTSHLTTVHNEERPFKCDVCEQSFKSVHNLKKHADIVHTEERPFKCDICEAKFKTSNYLKTHMFVHTEERPFKCDVCEASFKNIPSLTKHINVTHTEERPYKCEICEYTTKTAVYLRNHMLTVHSEERPYKCEICESAFKQAGNLKSHMIVHTEERPFQCEICEVSTKSLHSLRSHMAVHTDERPFECEQCSLKFKTAPALRTHLITHTEERPFRCEICDLSFKTNSYLQKHTNVVHSEERPFQCDSCESAFKTVGNLRTHMAVHTDERPFECELCGVKFKTAASLKTHGIAHTVDRPFPCEICDLSFKTNQYLQKHINVVHNEERPFQCDSCESSFKTIGNLKAHMIVHTDERPFKCDYCEYTCKTSSYLKNHMIVHTEERPYKSSLRTHLISHTEERPFSCEICDLSFKTHTYLQKHINVVHSDERPYKCNSCDSTFKTPGNLKAHLLVHTEERPFECEYCEYSCKTAGNLRSHMLVHTDERPFECEFCVFKFKTAAGLRTHLVTHTEERPFKCEICDLTFKLNTYLQSHISVVHSDERPYKCDYCESNLKSHFMNIHSKEETKYNCDQCDRKCRTRMEYKIHSTSHQTDLPLQCGLCEYRCSRESNLRSHMSTHSGGSYFMCEHCDFNANNEMELEDHVVNLHYRPTQPVKPKKEKSSTTTGKTSVLKQQINSRHSTINSHFLARFVIGNKNANAMRTEPNSSSGGGGGGQKKKSKIEKEKVLEHLTCDQCSSEFKNSANLKRHIHEKHGGEPDFPCNLCEKKFYRKEQLKNHQLSSHSIEIVTG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -