Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.012 16 5.8 0.4 15 30 63 78 54 88 0.82

2 9 0.078 1.1e+02 3.2 0.9 17 39 91 110 82 119 0.77

3 9 0.004 5.4 7.3 1.3 18 29 120 131 104 143 0.80

4 9 1.2 1.6e+03 -0.6 2.5 16 27 152 163 144 168 0.84

5 9 0.78 1.1e+03 -0.0 0.3 18 36 182 197 179 205 0.74

6 9 0.00058 0.8 10.0 2.1 4 32 200 229 197 236 0.75

7 9 0.0052 7.1 6.9 0.3 18 29 242 253 238 264 0.83

8 9 0.015 20 5.5 1.3 17 41 269 290 258 292 0.75

9 9 5.1e-06 0.007 16.6 0.1 19 44 299 321 294 321 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.012	16	5.8	0.4	15	30	63	78	54	88	0.82
2	9	0.078	1.1e+02	3.2	0.9	17	39	91	110	82	119	0.77
3	9	0.004	5.4	7.3	1.3	18	29	120	131	104	143	0.80
4	9	1.2	1.6e+03	-0.6	2.5	16	27	152	163	144	168	0.84
5	9	0.78	1.1e+03	-0.0	0.3	18	36	182	197	179	205	0.74
6	9	0.00058	0.8	10.0	2.1	4	32	200	229	197	236	0.75
7	9	0.0052	7.1	6.9	0.3	18	29	242	253	238	264	0.83
8	9	0.015	20	5.5	1.3	17	41	269	290	258	292	0.75
9	9	5.1e-06	0.007	16.6	0.1	19	44	299	321	294	321	0.96

Coding Sequence: ATggtcttttttcatattggttcTTTCAGATTGTCAGACGAAAACCAAGGACGTGATGAACCTCCTCCTCTGTCTGACTTTCCTGAAGCCAATGTTGGGGAAGACGCTCCTGTCAGCAAGGCCAATGTTCGAAAAGTGTCAACAAAATCGAAACGATCCAAGAAGAGTAACAAGGACGCGTGCGGCGACGTTTTTGAGTGTGACATTTGCCGTCGAGTATTCAAACGTAAACAATCTCTCGAACAACACAAACCGTCTCATAATAAACCTCACGTGTGCGAGATGTGCGGTGCTGcgtttaaaaagaaaagcaaaCTGGCCAATCATTTGCTTGTTCATAGCACAGAACGACCTCACGCATGTAACGTGTGTGGTAAaactttcaaaagaaaagacgaagTTGCCAAACATGATCGAACTGTACATCAAGGCAAGAAATATACGGTCAAAAAATGTTACCAGTGTCCACACTGTCCGAAAGCTTACACATGTCAAACATTTTTGGACGACCATCAGTATGTGCACACGGGCGTCAAACCTTATCAGTGTGATCTCTGTGGAACTATGTTTACGAGTAAATTCAATCTGGCCAAACATTACAAATACATGCATGGAAATGAAAAGGAGCCGACCAAGAAAAGTCAGTGTGAAATCTGTGGCAAGTCCTTCACTCGAGGACATTACACGCTTCATATGAAATATATGCATGGAGGTGGAAAACCGTCCTGTTCTATCTGTGGCAAAGTCCTGTCTTCGAAATTGATTTTGGCCGTTCATATGAATATTCACACTGGAGAGAAACCATTTTCTTGTGAACACTGTGGTCGATCATTCGCTTCTAAAGGTTATCTAAAGACTCATCTGCGTAGTCATTCTGAGGAAGCTCCCCCCAATTGTAATATTTGCCGTAAGAGTTTCAAACAAAAGTCGGCTCTCATTGTTCATTTGAGAACCAATCATCCTGGCGTAGAATGTGCCGACATGAGTTGA
Protein Sequence: MVFFHIGSFRLSDENQGRDEPPPLSDFPEANVGEDAPVSKANVRKVSTKSKRSKKSNKDACGDVFECDICRRVFKRKQSLEQHKPSHNKPHVCEMCGAAFKKKSKLANHLLVHSTERPHACNVCGKTFKRKDEVAKHDRTVHQGKKYTVKKCYQCPHCPKAYTCQTFLDDHQYVHTGVKPYQCDLCGTMFTSKFNLAKHYKYMHGNEKEPTKKSQCEICGKSFTRGHYTLHMKYMHGGGKPSCSICGKVLSSKLILAVHMNIHTGEKPFSCEHCGRSFASKGYLKTHLRSHSEEAPPNCNICRKSFKQKSALIVHLRTNHPGVECADMS

Sequence clustering based on sequence similarity using MMseqs2