Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 1.7e-10 1.4e-07 31.3 0.0 3 34 41 72 39 82 0.89

2 3 7.5 6.4e+03 -2.8 0.2 19 25 100 106 98 106 0.82

3 3 5.8 5e+03 -2.5 0.0 11 20 140 149 140 150 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	1.7e-10	1.4e-07	31.3	0.0	3	34	41	72	39	82	0.89
2	3	7.5	6.4e+03	-2.8	0.2	19	25	100	106	98	106	0.82
3	3	5.8	5e+03	-2.5	0.0	11	20	140	149	140	150	0.84

Coding Sequence: ATGACAAAATTATTAGAAGATGGCATCAAGTGGCAGAACACCACCCAACCACCCAGCAGTACAATAACACCTGGTGATGGTGAAAGAACGTCAGCTAGAGCAAGGAATAGTTGGAAGGCGGATGATATGAATTCTGCGTTGGAGGCATGTCGGGATGGAACATTATCGGCCAAAAAAGCCAGCGAAGGGTATGGAATACCTCTAAGAACTCTACGTATCTTTCTGGTCAGAAAACAGGGTGGATTGGCAGGGCGAATTTGGTTTCAActgtttttgaaaagaaaccCTCGAGTGGCACAAAGGAAAGCACAGAGAATTAATCCTGCCAGGGCTCAAAAACTTAACAAGTTTATAGTGAATGATCACTTCGAAAAGTTGAAGGGTATGATTGTGGACAACAACTTCCAAGATTCACCGGCAGTTACACAAGGAGCTACGAGTTTTTGCGAAGAAAGACGCTGA
Protein Sequence: MTKLLEDGIKWQNTTQPPSSTITPGDGERTSARARNSWKADDMNSALEACRDGTLSAKKASEGYGIPLRTLRIFLVRKQGGLAGRIWFQLFLKRNPRVAQRKAQRINPARAQKLNKFIVNDHFEKLKGMIVDNNFQDSPAVTQGATSFCEERR

Sequence clustering based on sequence similarity using MMseqs2