Pven007173.1
Basic Information
- Insect
- Pachypsylla venusta
- Gene Symbol
- bab1
- Assembly
- GCA_012654025.1
- Location
- CM022880.1:25804357-25819524[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-16 1.6e-13 50.3 0.0 1 43 46 89 46 91 0.95 2 2 4.6 3.9e+03 -2.2 0.1 6 15 174 183 174 201 0.75
Sequence Information
- Coding Sequence
- ATGGCGGAACAGATTTTGATGGCTTccGATAGTTACCAATATCAACTTCAatctatgtggcaaaagtgttgGAATACAAACCAAAGTTTAGTACATAATTTAAGATTTCGTGAGCGAGGGCCATTAAAATCTTGGCGTCCTGAAACTATGGCTGAAGCCATTCTCAGTGTTCTCAAAGAAGGTCTTTCATTATCTCAAGCTGCTAGGAAATATGACATACCATATCCAACGTTTGTATTGTACGCCAACAGAGTACACAACATGTTGGGACCTTCAGCTGATGGAAGTTCAGATTTGAGACCCAAAGGACGTGGACGACCCCAAAGAATTTTACTTGGTTACTGGCCAGAAGAACACATTCAAAATGTTATACGAGCCGTTGTTTTTCGGGATCCACAAAATATCAAAGATGAGCCCTTACCATTTGGGTATCCAAGACTGTCGTGTCTTCAAGATCTCTACGGACCAAGCGGATGTATGAATGGTCCTGATGCACCAATGTCACCCAATTCAGCAACTGCTGCAGCTGTTGTAGCTGTGGCCCAAGGACTGAGACAACAAATGTTAGCTGCTGCACATCATTCCGACCCCACCCTTAGTCTTTTAGCAAATCATCTTGGCACAAATGGAACAAcaactaatttattatttaacacgCCCATACAATCTCCAGAAGACTCGAATTCACCTCCACCAAGTCCTGTAACTAACAATAATTTAGAGGTGGGAATTGGTGTAGCAGATATGTCATTTAAACCCAACGATTATTCCAAAACTAGCACTATGTTTGATGACGATATAGAAGATCTTGTTAAATCACCAAGCCGGCCTTCCTCGGCCCGGTCATCATCGAAGGACCAACCTATTCCTTTAGTTTTGGAATCCCGTACTGAATAG
- Protein Sequence
- MAEQILMASDSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAILSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGSSDLRPKGRGRPQRILLGYWPEEHIQNVIRAVVFRDPQNIKDEPLPFGYPRLSCLQDLYGPSGCMNGPDAPMSPNSATAAAVVAVAQGLRQQMLAAAHHSDPTLSLLANHLGTNGTTTNLLFNTPIQSPEDSNSPPPSPVTNNNLEVGIGVADMSFKPNDYSKTSTMFDDDIEDLVKSPSRPSSARSSSKDQPIPLVLESRTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00442550;
- 90% Identity
- -
- 80% Identity
- -