Pven019276.1
Basic Information
- Insect
- Pachypsylla venusta
- Gene Symbol
- -
- Assembly
- GCA_012654025.1
- Location
- CM022875.1:23232403-23243688[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 7.9e-06 0.0068 16.3 0.0 15 37 118 140 115 143 0.84 2 3 0.064 55 3.8 0.0 27 40 184 198 159 201 0.66 3 3 1.4e-09 1.2e-06 28.3 0.0 2 40 221 260 220 262 0.93
Sequence Information
- Coding Sequence
- ATGAAAGTAAAGGAAATTGACAAATTGCTCAGACTAGGTCGTTGTTTAGACGCTATGTATTCTGCTCTTCCCCTTCTTCACCATCCAGACAaagttattcaattttttgccGTTCTTACAAAAATCTCACAGGCTATGTATCTATTTTATGATCACATTGTGTGGTTTGGAAGAGTTGGTCTCACGGATGTAGATACGCTTCATTGGGCAAACTCggctaataaatattatttatattctatCTCTCTAATGTTAGCAAGAGATTTTTATGAAATCTTACAATTGTATGATGCAACTAAACATTCTTATAGAATAGTATCAGTTTCAGGTTGTCCCGGAGAGAGCGTCAGTGGTTCATCTTTAAAAAAGGCCAGCGATACTTATGGTATTTCTAAAACAGCCCTGTGGAGACAAGTGAATAAGGTCCTTGGACCAAACGTGCTTTCTTTTCGAGCTCGagataaatcaaaatatactAAAGAAGAAATGGAGCAAGCAACACAGAGGATCATAGCAGGTGAAACTTTGCCAGAAATTGCAAAATCTACGAACATACCATTTTCATCTTTACACCGAGAAAAAGTACGTCGAATGTATGCTGGGGACATCCCTTACTGTGCACCAAAAGAGAAAATTCGatataaaaaagatgaaaataaaaatgcgaGATTAATGAAAGCTATTGAAAtggtgaaaacaaaacaaatgagTCTCTTGACTGCGTCAAACTATTTTGAGCTCCCTAAAGCTACAATTTGGAGAAATGTGAAAAAACTTCATAGTCCTGACATAGATCCAACAACAACACCAGATGAAGGCAATGATATGGAACAAGAGGATGTAACAATGGAGGAGGTAGGTGCTGTAACATATCTTGGCGCCGTtaatgatataaaatataagaaagtaACTCTGGGAGAGACAGGTTGCCTTGTGTCCCAGCACACAGTCACGGATATTGTACAAGATTAA
- Protein Sequence
- MKVKEIDKLLRLGRCLDAMYSALPLLHHPDKVIQFFAVLTKISQAMYLFYDHIVWFGRVGLTDVDTLHWANSANKYYLYSISLMLARDFYEILQLYDATKHSYRIVSVSGCPGESVSGSSLKKASDTYGISKTALWRQVNKVLGPNVLSFRARDKSKYTKEEMEQATQRIIAGETLPEIAKSTNIPFSSLHREKVRRMYAGDIPYCAPKEKIRYKKDENKNARLMKAIEMVKTKQMSLLTASNYFELPKATIWRNVKKLHSPDIDPTTTPDEGNDMEQEDVTMEEVGAVTYLGAVNDIKYKKVTLGETGCLVSQHTVTDIVQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -