Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 7.4e-13 6.3e-10 38.8 0.0 3 39 42 79 40 83 0.90

2 4 1.2e-12 1.1e-09 38.1 0.0 2 38 95 131 94 136 0.89

3 4 3.2e-17 2.7e-14 52.8 0.0 2 45 150 194 149 194 0.97

4 4 3.4e-17 2.9e-14 52.7 0.0 1 43 201 244 201 245 0.96

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	7.4e-13	6.3e-10	38.8	3	39	42	79	40	83	0.90
2	4	1.2e-12	1.1e-09	38.1	2	38	95	131	94	136	0.89
3	4	3.2e-17	2.7e-14	52.8	2	45	150	194	149	194	0.97
4	4	3.4e-17	2.9e-14	52.7	1	43	201	244	201	245	0.96

Coding Sequence: ATGCAAACAATGATGATTACCCCCGAGCTTCTCGGTCTGCTCCCTTCATCATCTGGTCATTCGGATCAAGGTACCGAAAGTGATAAAAACGGGGCTCTTACAATGACCAAAGCTTGGAGTTCAGAAGATATGGATTCGGCATTAGATGCACTGAAATCTGGAGAAATGAGTTTGACTAAAGCTTCTGTTACGTATGGAATACCTTCAACAACTTTATGGCAACGAGCACATAGGATGGGTATTCACACACCAAAAAAAGAGGGACCTGCAAAAACCTGGAATGAAGATATATTGAATGTAGCACTTGATGCTTTGAGAAATGGCAGCATTTCAGCAAACAAAGCGAGCAAGGCTTACGGAATTCCCAGTAGTACGTTATATAAGATAGCTCGCAAAGAAGGAATTCGGCTCGCTTCACCATTCAACGCATCACCTGTCACTTGGAATCCTGCTGATTTGGAAAGAGCACTAGAAGCCATTCGATCTGGTCAAACGACAGTCCAAAGAGCAAGTACTGAATTTGGAATACCTTCTGGGACATTGTATGGAAGGTGTAAACGAGAAGGAATTGAACTGTCGAGGAGTAATCCCACACCTTGGTCGGAAGATGCGATGGTGGATGCTTTGGAAGCTGTTCGGATTGGTCACATGTCTATCAACCAAGCGGCCATTCATTACAATCTACCCTATTCTTCTTTGTACGGAAGATTCAAACGAGTCAAATACGAAGCGGACCATCCTGAAGCAGGAGGCAACATGATTGAATCGCATGCCGAGTCAAGACCTCCGAGTACACAGTCACAATCAAGTCAGCAAAGTCATCCCAATAATCAGCAGCAACAGCAAGCTTCTTCACAGCAACAGCAAACTGTCAACATTCAAGCCCAACACATCACCACCACCCAAACTTCTCAACACATAGCGCCGCCTCCACAGATAATGTTAGTTCAATATCCACAACAACTACAAATGTACTCTCACAGTAGTTGA
Protein Sequence: MQTMMITPELLGLLPSSSGHSDQGTESDKNGALTMTKAWSSEDMDSALDALKSGEMSLTKASVTYGIPSTTLWQRAHRMGIHTPKKEGPAKTWNEDILNVALDALRNGSISANKASKAYGIPSSTLYKIARKEGIRLASPFNASPVTWNPADLERALEAIRSGQTTVQRASTEFGIPSGTLYGRCKREGIELSRSNPTPWSEDAMVDALEAVRIGHMSINQAAIHYNLPYSSLYGRFKRVKYEADHPEAGGNMIESHAESRPPSTQSQSSQQSHPNNQQQQQASSQQQQTVNIQAQHITTTQTSQHIAPPPQIMLVQYPQQLQMYSHSS

Sequence clustering based on sequence similarity using MMseqs2