Plon036705.1
Basic Information
- Insect
- Pachydiplax longipennis
- Gene Symbol
- -
- Assembly
- GCA_036926295.1
- Location
- JAVFKF010000009.1:12342146-12352526[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.036 15 8.5 0.7 1 23 1125 1148 1125 1148 0.91 2 9 2.3e-05 0.0092 18.6 5.2 1 23 1153 1175 1153 1175 0.98 3 9 0.0038 1.5 11.6 4.5 1 23 1181 1203 1181 1203 0.97 4 9 0.31 1.3e+02 5.6 1.3 1 15 1209 1223 1209 1231 0.84 5 9 0.14 57 6.7 0.0 2 23 1238 1259 1237 1259 0.95 6 9 5.1e-05 0.02 17.5 2.1 1 23 1265 1287 1265 1287 0.98 7 9 0.00021 0.085 15.6 1.0 2 23 1292 1313 1291 1313 0.97 8 9 0.034 14 8.6 5.2 1 23 1319 1341 1319 1341 0.96 9 9 0.19 77 6.2 3.5 1 23 1347 1370 1347 1370 0.97
Sequence Information
- Coding Sequence
- ATGTTGGTGGACGCCAACGTTCCTCAAAGTTCGGAATTGAGTAAGTGTAGGATTTGTTTTGAAACGGAGAAGACTTTAATATACATTTACGAAGTCAGCGGGGATTTAAAAGATATAGCACGGACAGTAACGGACATACTCAAGTACAATGTATCAGTGAATGACCAGTTTCCACCGTTTGTCTGCACCGATTGCTCTGATAAATTATGCGAATTTAAGGCCTTCAAAGTTAAGTGCGATTATTTGAGAGATGCATATAAGTTGCTTCTTAATTCAAAAGCAGATAGTTCTGACAACACAAAAACAAGGGTTGATGGAGGAAGCTACATGACAGAGAAGATAGAAGATAAAGCAATTTTGGATAGATATATTGATGAACTTAACTGTGATAAAGTTTCTGATAGAGCACTGCGATGCAGGAAGACGATACATTCTAAACAACATCCAGATGATTCTGATCTTTCAGACCCAGAATCAAATGATTCATTCCACCCCACTCATCAGGATGACAGCAACAGTATATGCAGTGATGATAGCCTTAATTCAGTTAGTAGTATCAAGAGGAGAGAAAGACTCACAGTTTTCAGGGAAGGAGTTGATCCTATAGCATCTAAAAACATCCCTAGAATTGATTTATTGAATGGAGCACTTGGGGCAGGAACGAAGGAGGAGATGGGTAATCAAAGTAATGAGAAAACTATCTGTGATCCTAGAACTGCAGCAGATGGCTCaattgtaaataatactgtTTCGATAGTTTCCACAGTGAATAAAGTGTCTTCAGGAAGTATCATTGATAGTAAATCAGAGTCCAGTGGGGTACAGGTGGATCTTTCATCTTCTGATACACCACAAACTTCTATAAGATCTACTATCACATCTAAATTAGATCTCAGTCACAGTGCAAAGAATATGGGTTCTAATCATTCAGTGAACCTCAGCCTATCTGTGAAAAATTTTAGCAGAATATTGACCTCAAATGATCCAACTCAATGGACTAGTGATTCTGATTCCAATGAAAATCATTCTGTATCAAGCGTTCCACTTGAATCCTGTGACAAAAATGCAGGACCTAATAGAGAAGTAGATGTAAGTCATGAATCAGAAGCAATTACTTTGAAACATCTTTTGGCAGGtcattcatattttgataaagttAGTATGAATTCAATCCTACAAAATAACATATCATCCCTTCCTAGGAGTAAATCAGTGTCTTGGCAggatattttagtaaataaggAAGTGTCCAGTAGCAGCAAGTCATCATGTTCTCAGACTAATTCAGTTTCTCCTTCTTTGGCTGATGTTTTGGAGACAGAGATAATCCCCAATAATGACATCAGTGCATCTATACAATCCAGGGAAGAGGTGCTTGATTCTGCactcattttaaaatcttcaataaatttAGATTCTGCTGTGAATTCTCAGTCTATTGGTGTACAAATAAATGACACAGAGGCATCAGAATGGGTGACAAAGCAGCTGAAAGAAACTGGGAAGTATGGCAGATTATATCCTGGGATCTCCACCATTGATTTAAAGAGCTTTGGAATTACATTTGAGTCAGAAATGGATGAATCAGTGCCTGATAACAATGGAGCAACCATTCTTCAGGCTGAAAATCAGATTGCTAGAATGGATACAGAGAAAGATAGAAACATGCAATCATCAAGAAGTGTTACTCTTGAAATAAGTGGTGCTAAGCTTCCTAGGGAAGGGTCTTCAAGCACAGCCATACCAGAGGTTGAGAATTCTGGACGTAATCTGGTGCATGGATCAATGAAAACAAGAGAGACAGCTGTGCTTTGTGATGATCAGAATAGTCCGACTGAAAAATCCAGCATTTTGGGTGCAATGGAAGTAGAAAGGAAGGAGATGTTTAACACTCGAGATCAAGAATCCAGTAGAGAAATGGTGATAAATAATGTTCCATGCAGATTACAGGCTATAGCCTCCTCAACAGATTCATTTCACAGTAGTTCTCCAAGTACTCCAAGTAATTTCAGCTATGAATCTAGTTATCAAACTATACAGGCTAGTGAAAGAAGCATTGCAAAACCAAGCAATATCACACATTTGACATCACAGGGACTTAGCAGAGTCCATCATACCTCAGTAAATACATCAAATGGCATCACTGGATTAAATTCTATAGCAGGATTCTCAAATTTAGCAATTCCAAGGGCTTATTCTTCTCAAATATTTCTGCAGAGAAGGCCTGTCCCTACAGTTCCCACTACATTCAGCAGTTACAACCCCATTCTCCACCATACTGTCCACCAAGAACGTCCAGTTTTGAGTCCTACTGTGAGTATAGTTGCAACTGGTTACACTTCAACATCTGATTTTCCAAGATATTCTAATGGCTACAGCAACATTGGTACTACATCCATTCTTGGTAGTTCAGGAGAGTGTTCAACAGCATTCCAGGAGTCAATACCACAGactaaatcaaaagaaataactaCACCTGCACATTATCAGTCAGGTTCAGTTGACAGTCATATGAAAATGACATTGAAGAATCACTTACCAGAAAAAACATCATCTGTAGTCAATTCAAAAGTTGTGGTCAATGTGGAATTGGTCCAAAGAGAAAATTTGGTAATGACTCATGAAGTAAACCATGAGCAAAACACTAGTAATACAGAGGAGGTATTGAATGTTTCTAATATAAGTTCTGCTAGAGTTACAAGAGGATGTGAGGATAATGGTAGGCAGCCATCAAGAGAGAGTGTTGCATCAAGGATGGAAACGTCAAATCAAATCCCAGTAGCTCCTGCAAAAGATATGTTAGTTTGTGTGGATAAAACTGAAAGTTGTATGAATGGATCTAAAGTGGGTCTCAGTTTAGGCAAATTTGGAGGAACACAAGAAAGTCAGACTATCAAGATAAATGTTCCTATGGCTTTTTCAACCCAGAGAAATGTGATCAGAAGTTTAGCTGATTCAGTTCCAACTAAGTTGAACTGTTACAACTACCTTTCCAACTTAGAAGATCTTTCACGCAGTGTTTTGAATTCTACTACTGTAGATACCAGTACTAGTAATACCACACCCTTAGGTATATCTATGAACCCTATACATGAATCCAGCAGTGCCTGCAATGAGAGACTGGTTCTTCATAGTTCTGAGAAGAGCTTGTCAGCACTGAACCAGGATTTGTTACAACAAGATGCATACAAAGACATTGCTACAGTGAGTAATTTCATATCAGAACCAGAAGTGGGAAAAAATAGGTCAGAAGTATTGAGAGAGGCTGAGTTGAGGAGTTCTGAAACTTCCAGATCTGACGATGAAGGTGAAGATGGTATTGAGGAAGATTTTGACATTGAGAGAACTCTAAAGAAGAATCCTAGAAAAGAATATCTGTGTGAATTTTGTGGGAAGgtatatttcaacaaattttctaTAAGTGTACACAAGAAGGCTGTACATGGTGAGAAAAAATTCAAGTGCAACATGTGTCCAAAAGTGTTCACATTGAAACATCACCTCAACCAGCATTTGTCCATGCATGATAAATCTAGACCATTTTCCTGTAAAGAGTGTGGGGACTGTTTTAAGCTGAAAACACATCTTAAGCAGCATGCATTGGTACACAGCAAGAAACGGAAGTACCAGTGTGCACACTGTGACCTGGGCTTCAACACCAAGTGGCAGCATGACAACCACCAGCCATCACACGAGGGAAAAGTTGTCTGGAGCTGTGAGGGATGtgcagaaaaattgaaaacatgGGCTGAATTTGTAGATCACATATTGGAACACAAGAAGAATCAAATTTACAAGTGTAACATTTGCACCAAGTCATATACTCTTAAATTATCACTGAAGAAGCATATTCTTAACCACATGAAGGCATTGGAATGTTCAGTATGCGGAAAGTGCTTTGGTTTAAGTAGTGCCTTGAAATTCCATATGAGAGTACATACTGGAGAAAGGCCGCATGTTTGCAAATTTTGTGGGAAAGGGTTTGCTAAATCGCACGGTCTCAAATGTCATATAGTAACTCATTCAGATGCACGTCCATTTAAGTGCCAGTTCTGTAATTTCAGaactaaattgaaaatttctctgaatcAGCATGAGAAAAGAATGCATCTCCaaaaccaaaattaa
- Protein Sequence
- MLVDANVPQSSELSKCRICFETEKTLIYIYEVSGDLKDIARTVTDILKYNVSVNDQFPPFVCTDCSDKLCEFKAFKVKCDYLRDAYKLLLNSKADSSDNTKTRVDGGSYMTEKIEDKAILDRYIDELNCDKVSDRALRCRKTIHSKQHPDDSDLSDPESNDSFHPTHQDDSNSICSDDSLNSVSSIKRRERLTVFREGVDPIASKNIPRIDLLNGALGAGTKEEMGNQSNEKTICDPRTAADGSIVNNTVSIVSTVNKVSSGSIIDSKSESSGVQVDLSSSDTPQTSIRSTITSKLDLSHSAKNMGSNHSVNLSLSVKNFSRILTSNDPTQWTSDSDSNENHSVSSVPLESCDKNAGPNREVDVSHESEAITLKHLLAGHSYFDKVSMNSILQNNISSLPRSKSVSWQDILVNKEVSSSSKSSCSQTNSVSPSLADVLETEIIPNNDISASIQSREEVLDSALILKSSINLDSAVNSQSIGVQINDTEASEWVTKQLKETGKYGRLYPGISTIDLKSFGITFESEMDESVPDNNGATILQAENQIARMDTEKDRNMQSSRSVTLEISGAKLPREGSSSTAIPEVENSGRNLVHGSMKTRETAVLCDDQNSPTEKSSILGAMEVERKEMFNTRDQESSREMVINNVPCRLQAIASSTDSFHSSSPSTPSNFSYESSYQTIQASERSIAKPSNITHLTSQGLSRVHHTSVNTSNGITGLNSIAGFSNLAIPRAYSSQIFLQRRPVPTVPTTFSSYNPILHHTVHQERPVLSPTVSIVATGYTSTSDFPRYSNGYSNIGTTSILGSSGECSTAFQESIPQTKSKEITTPAHYQSGSVDSHMKMTLKNHLPEKTSSVVNSKVVVNVELVQRENLVMTHEVNHEQNTSNTEEVLNVSNISSARVTRGCEDNGRQPSRESVASRMETSNQIPVAPAKDMLVCVDKTESCMNGSKVGLSLGKFGGTQESQTIKINVPMAFSTQRNVIRSLADSVPTKLNCYNYLSNLEDLSRSVLNSTTVDTSTSNTTPLGISMNPIHESSSACNERLVLHSSEKSLSALNQDLLQQDAYKDIATVSNFISEPEVGKNRSEVLREAELRSSETSRSDDEGEDGIEEDFDIERTLKKNPRKEYLCEFCGKVYFNKFSISVHKKAVHGEKKFKCNMCPKVFTLKHHLNQHLSMHDKSRPFSCKECGDCFKLKTHLKQHALVHSKKRKYQCAHCDLGFNTKWQHDNHQPSHEGKVVWSCEGCAEKLKTWAEFVDHILEHKKNQIYKCNICTKSYTLKLSLKKHILNHMKALECSVCGKCFGLSSALKFHMRVHTGERPHVCKFCGKGFAKSHGLKCHIVTHSDARPFKCQFCNFRTKLKISLNQHEKRMHLQNQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -