Plon046864.1
Basic Information
- Insect
- Pachydiplax longipennis
- Gene Symbol
- zfh1
- Assembly
- GCA_036926295.1
- Location
- JAVFKF010000012.1:25418749-25425888[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0017 0.67 12.7 0.1 2 23 620 642 619 642 0.94 2 9 0.022 8.7 9.2 0.2 1 20 888 907 888 911 0.89 3 9 3.1 1.2e+03 2.5 1.5 1 17 918 934 918 941 0.77 4 9 0.00013 0.054 16.2 1.1 2 23 948 969 947 969 0.93 5 9 0.00051 0.2 14.4 3.6 2 23 982 1004 982 1005 0.95 6 9 0.00012 0.05 16.3 0.8 1 23 1010 1032 1010 1032 0.96 7 9 0.033 13 8.6 2.7 1 23 1038 1060 1038 1060 0.98 8 9 0.00021 0.087 15.5 3.4 1 23 1066 1089 1066 1089 0.97 9 9 0.071 29 7.6 0.9 1 23 1098 1120 1098 1120 0.96
Sequence Information
- Coding Sequence
- atgaaaatgaaagtatctAAGGATACTTTACTACAGCCTGCCGCTAAAGGGGGCATGAAGACTGCCGATTGTTTATCATCTTTACACGTGCCAGTGGAACAAGAGATCGTAGAAAATATGACTCTATCTCAAGAACACAATGCTGAGTCTTCCGTAGCACATTCGTCTTCGGATGGCGGAGATGTTAGGCTCGAGGAAGTCGACTCAAATGCAGTTTCAGCTATGTTATGGTCATCCGATAGTATGTTACGGCAGAGTCTTTTGTCTCCAGCCCTTCTCTCTTTTACATACCCAGGCCATGATAAACCTGTTAAAGATATTGATCTTGAAATCAAAGGGGTCCCAAGTTGCAATTCAGGACTTGTTCCAGATTTATCCCTATCGAATCCTGGAACCACGAAGGAAACGATTTGCCCATCAGCAGGGTCTCAAGATTTAAGAACTTCCATACTCAATAGTAATTCTAGTTCAGAAGCTTCTTTTTATGCTCCAGATAATCCTAATCAAGTGAGTGAAATGATTCCTAAGAAACGTAAACACAATAGTGATCATCAAAACTCTGAGACTGGCCTTCCTCTTCCTCCGATCGCTGAACTCACTTCCAATCATATGTTGGCTGCCGTAAACGAACTTAACTTACAAAGACTTCAAAGGAGTATGTCTAGTAAACAAAAATCGGACCATAGAACGGACATAAGCCACGGTAACAGTTCTCCCAATAGCTCTTGTGCGTTTTCTTCTCACAGTGATTGTTCCCCATTGTCCCAACAGCATCGTGTCTCGCAGGCAATGCTTCCATCAGATCTCATGCTTGTAGCTTCGGACACTAGTGACATTCACCAAGATCATCTGCAAAATCACGATGAAAATCTTGCCGGCGATTCTCCCTCCAACTCTGGTTTGCTCTCTCATTTGCCCCATCGTGAAGCTTCTTTGCCTGCTATTAGTGGCAGTCAAGTTTCATCTGTGTTATCAGCTCTTGCTGAAGGTGTGAGTGTCGATTCAACCTCTGCTAGTGAAGACGTTGACATGGAGCGTGAGGATAGATCTCATTCAGCTCACATGTGTGTCTCCGTTGCTCCACAAATCGGTACAGAATCCATTCCCGTTTTTTCGCAATTGAAGGATTCTTCGAATTCAAGTCAGTGCTCGGGAATATCCAAACTTCAAGGAAGAGAAACCGAGGAAATCTTAAGTCCCATTGAACAGTCATCCAGGAGTGATTCGTTATCATTAGGTGTTAAATGTGAACCAACTGTATTATTGAGCCAAGTTCCCATTGATGCTACAGCGCATTCTGTCAATGGAAGTGCATCGGAAATTGCCATCCACGAATACCTTCCTACTCCTTCAAAACATAGCAGACAGAGTTTAAAAGACCTCATAAAACCTGAAAATAACGGTTTCAGTGTTTCTCCAAAGTTTAGTGACTCTAAACTCAATAGTGATGAATGCTATTCTAACAAGAAAAAGCTGTCGGTTGATCAGAAAAAATCTAGTGGTAAATCGAGTAGAAACCAGGCATCAAACCTTAACCCATCAAAACAAAATCgtcaaaagaagaaaagcacaaaccatttaaaaaattctccaaaTCATCAGCAAAACCAAAATCAAGATCCTGTGATAAATCAATTGAGGGAAGACGTTTGCGATAATAATTATGTTGAAGAAGTTTTTTGCTTTAAGTGCAAGCTTTGTACCTTTTTGAGTCTTGAGAAGATTGAAGTAACGCGTCACATAGAAGAAAATCACTCCTCTGATCTGCTGTCTAAATGCAGGGACTCATTTGCTGACTCAACTTCAGATCATGCTGAATCTAGGGATTGGAGTAATCATCTGAAAAGGCGGCGACTTAAGTGTCCTGGGTGCCCAAATGTGTTTTTCAGTTCTAAGGCTCTGGAAGTTCATCTATCTCAAGATCATCAGgtcAGTGATGCAGAGTTGCagattatcttgaaaaatatggaCATAGAAAGCACAGCATCATCACCTATCAAGAGTTCCTCACAAAAAGAAGATAAGCCAATGATTAAAAATGGAGTAGACACAGATGCAAAACCAGCGAGTAATAATGAGGAATTGCAAACTATGGAGGGTGCAGTAACTGCTAAGAGAAAATGTGTAGGCAAAAAGAATGGGAAGGATAGTAAGTCGGGGAAAGATTATAACGAAACTCTTTTGGAAGCTTATATGGATGAGCAAGGAAAACTGTGTATTAAAGAAGTTGATAACTTCAGCTCAGATGAGAGAGAAGATGAAGGAGTGGAGTCAGAAGAAGAGAGGTCTTCATCAGGTATTGGCTTGTTCAATGTAGAAACTACATTGGAAGTGTCAGATGAGGATTATGAAGATGGAAAAGTGTGTTCTGAGTCAGAGAAGGACAGTGGTAAAGATCTCACGAAGAAGGAAGCTGGAACCGATCAACAAGTGGTGGCAAAAGGGCAAACTCCTAAACGAAGAGGTAGGCCCAAAGGTTCTCGGAATACTGGAATAACTGCACTGCGTCGAATGAATCCATCTGTTCGACTTGGAGAAAAAGAGTTGGGTTATCGTTGTGGAATAGATGGCTGTGCTGTTAGAATGAGATCTCTTGATAATATTGAATATCACAGAAGATGTCATGTACCTGGTGGTCCTGCTGAAAATGGTGGTATGCAGCATGTCTGTCCAGAATGTGGAGAGTTATTTTCTCATTGGCGATCCGTGGGAGTACACCTCTGGAGGGCACATGTAATTGATATGGAGCTATATTCATGTGATCAGTGTACATATAAAACTAACAGcTATAGTAAGTTGATGAACTTACACAAGAGGATTCACAGCAGTGAAAGACCCTTCCTTTGTGATGCTTGTGGAAAAGGTTTCAAGACGAGTAAACAGCTTAGAAATCATAAGACTATTCACATAGTGAAGCTGAAGCAAAGAATAATGCACTGTGGAGAATGTGAAGTTTGTCATCGCAGTTTCTCTGATCGTCGAATGCTGCGCTTGCATAGGGATACAGTTCATCATAAACTGAGACCTTATCTGTGCAATTTCTGTGGTTATGCTGCTTCATCACGGTCTACCCTTAAGATGCATATGCGTCAACATACTGGTGAGAAACCATTCCAGTGTGATGCATGTGAGTACAGAACAGCTGACCACAACACATTGCGCCGTCATAAGATGAGGCACTCCGGAGAAAAACCTTATAAATGTCCTTATTGTCCATATGCTTGCATTCAGTCTAGCACATATAAGACTCATCTGAAAAACAAACATCCAGGTCAAGATGATGGTTTAATGTTCAGCTGCAATCTTTGTTCATTTCGATCAATCAAAAAGGAGAACTATGTTACACATATGGCTGATCATGAACATGGTGCTATCCCAGCAAATAACAACAATGGTGCAAAAAAGCCACATCATCTGAATGGAGAGGCAAATGGTAATAATGGGAAGATCTCTTCCACACCCGGACCCtcaaaatctaagaaaaagaCTGAAaAATCTTCCAACAAAAATAATGCTCAGTGCAGTGTTAAAAAAGCTTGTAAATCACCTCTCAAGCTGGAAGTAGAGAAGAAAAGTGGACTTGTAAATGTGGATAGACGATTATCAGATGTTTGCAGTCATGACAGTGATAATTCTGGACTGCCAGTTGAATCTGACTTGGATCCTTTACGATCTCaggtatga
- Protein Sequence
- MKMKVSKDTLLQPAAKGGMKTADCLSSLHVPVEQEIVENMTLSQEHNAESSVAHSSSDGGDVRLEEVDSNAVSAMLWSSDSMLRQSLLSPALLSFTYPGHDKPVKDIDLEIKGVPSCNSGLVPDLSLSNPGTTKETICPSAGSQDLRTSILNSNSSSEASFYAPDNPNQVSEMIPKKRKHNSDHQNSETGLPLPPIAELTSNHMLAAVNELNLQRLQRSMSSKQKSDHRTDISHGNSSPNSSCAFSSHSDCSPLSQQHRVSQAMLPSDLMLVASDTSDIHQDHLQNHDENLAGDSPSNSGLLSHLPHREASLPAISGSQVSSVLSALAEGVSVDSTSASEDVDMEREDRSHSAHMCVSVAPQIGTESIPVFSQLKDSSNSSQCSGISKLQGRETEEILSPIEQSSRSDSLSLGVKCEPTVLLSQVPIDATAHSVNGSASEIAIHEYLPTPSKHSRQSLKDLIKPENNGFSVSPKFSDSKLNSDECYSNKKKLSVDQKKSSGKSSRNQASNLNPSKQNRQKKKSTNHLKNSPNHQQNQNQDPVINQLREDVCDNNYVEEVFCFKCKLCTFLSLEKIEVTRHIEENHSSDLLSKCRDSFADSTSDHAESRDWSNHLKRRRLKCPGCPNVFFSSKALEVHLSQDHQVSDAELQIILKNMDIESTASSPIKSSSQKEDKPMIKNGVDTDAKPASNNEELQTMEGAVTAKRKCVGKKNGKDSKSGKDYNETLLEAYMDEQGKLCIKEVDNFSSDEREDEGVESEEERSSSGIGLFNVETTLEVSDEDYEDGKVCSESEKDSGKDLTKKEAGTDQQVVAKGQTPKRRGRPKGSRNTGITALRRMNPSVRLGEKELGYRCGIDGCAVRMRSLDNIEYHRRCHVPGGPAENGGMQHVCPECGELFSHWRSVGVHLWRAHVIDMELYSCDQCTYKTNSYSKLMNLHKRIHSSERPFLCDACGKGFKTSKQLRNHKTIHIVKLKQRIMHCGECEVCHRSFSDRRMLRLHRDTVHHKLRPYLCNFCGYAASSRSTLKMHMRQHTGEKPFQCDACEYRTADHNTLRRHKMRHSGEKPYKCPYCPYACIQSSTYKTHLKNKHPGQDDGLMFSCNLCSFRSIKKENYVTHMADHEHGAIPANNNNGAKKPHHLNGEANGNNGKISSTPGPSKSKKKTEKSSNKNNAQCSVKKACKSPLKLEVEKKSGLVNVDRRLSDVCSHDSDNSGLPVESDLDPLRSQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01385264;
- 90% Identity
- -
- 80% Identity
- -