Plon043279.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pachydiplax longipennis
Gene Symbol
mecom-a
Assembly
GCA_036926295.1
Location
JAVFKF010000010.1:17277378-17283944[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 0.47 1.9e+02 5.0 1.3 1 23 52 75 52 75 0.92
2 8 4.1e-10 1.7e-07 33.5 1.0 1 23 131 153 131 154 0.96
3 8 2.7e-05 0.011 18.4 2.5 1 23 160 182 158 182 0.91
4 8 6.1e-05 0.024 17.3 4.4 1 23 188 210 188 210 0.99
5 8 0.0029 1.2 12.0 0.7 2 21 218 237 217 238 0.95
6 8 2.3e-08 9.3e-06 28.0 1.1 1 23 691 713 691 713 0.99
7 8 3.3e-07 0.00013 24.4 1.7 1 23 719 742 719 742 0.97
8 8 2.7e-06 0.0011 21.5 3.4 1 23 748 770 748 770 0.99

Sequence Information

Coding Sequence
ATGTCGTCTGTAAAAGGCTTTTTCCCTTTCACGCGCCCTTTACACCCCAATGCTGCCCTCGAACACGGGGAAGTGCGTCGTGATGGTGCCACCTCATATAAAGATTCGTTAGACCACCATCTGGTCAGCGTCCACAAGTACCTCCCTAACAAGTATCCCTGTGAGTTTTGCGACCACGGATACTGCTGGAAACCGAACCTCATCCAGCACAAGATTCTGATCCACAGAATCCTTGCAGACGAGGAAAGGAAGCACCTACTGGGCGGAAGCGGCGACGTACCATTGGGCTACGGCCAGTCCCCAGGCCAAGCCGATTCCTCTGCCTCAGCAACCGCCTCTTCGGTCAACTCTCCTGCTACTGTCTCCAGTGAGCACTACCCTCAACGTCGCTACGTTTGCGAGAATTGCGGCAAAGTTTTCAGTGACGCGTCCAACCTCCAACGCCACATCCGCACCCACCACGCCGGAGCGCGTTGCCATGCATGTGCCGAATGCGGCAAAACTTTTGCAACCCCCTCCGGACTCAAACAGCACGCCCACATTCACTCCAGTGTCAAACCATTCCGTTGCGAGGTTTGCCTGAAGGCCTACACCCAGTTTTCTAACTTGTGCCGACATAAGCGCATGCACGCGAACTGTAGAACGCGAGTTCAGTGCCCCAGTTGCCACCAAGGCTTCAGTTCCCTGAACTCATTGGCGAAACACAAGCGCTTTTGCGAGACGCCCTCCGGGGAAGAGACCGCGATCCGGAGGTCATCGACGGCTGATGAGGCAGCGGCGGTAAACGGACGAGCAGAGCAGCGTCACCGGCCACCGCCACCACTACCGCCACCGCCCCCTCCGCCTCCACCCCCCCCTCCTCCGTCGCCTTCCATCAACTTCACTGCGATGAATAATATCAACCAGACACCTTTGAATAATGCTTCTCTCCTTCTCTACCCGAGGCCTTTCGCTAATTTTCCCACGTCTCTCGTCAACCCTTTTCCGATATTTCCTCAGCCGCCTCCTCCTCACGGACATCAGGCTCCTCCCCAATATCCCAATCCTTTCCTTGCCTCCACTCTGCTGTTTGCCCCTCACGCGGTAGGACAGAAAGGTAGAGACGGAGAGGATAGCATCATGGCATCTCAATATCCACTTCTACCTCCCCCACCACCCCTTCCTCTATCCGTAAGAAGGTCCGGTCTCGAGAACGGAGACGGGAAAGCAGCTCCAGAGGCCAATAATGACGAGGAAGAATGGAATACCAAAGAGAAAGAGGAGAGCAAGAGGACCAAGTCCTCTAGCGATGCTCAGTCAAACAAGAAGGAAGGAAACCAAAGCAACGATAAGGATGAAAATGAAGAGTGTGAGGAGGAATGTgtagaggaagaagaagaggaagaggatgGCCCCAGAGACTTATCCAGTAGGCCATCCTCAGCCAGGAACGTCACCACCTCTTCTGAATCCCAAGTGGAGTTACCATTGGACTTGAGAGTTACCAAAAGAAGGTGGTCATCGACTGAGAAGGCCCCCACCGCTGGAGGGAAGATGATGAAGGAGAACCACGCGAGGCAGCTATCGGACAATCAGCCTCAGCCTCCACCACCTCCTCCCCCGCCTCCCCCAGCCCCATCACACCCATCTCTCCTACCGCCTCCTTCGGTAAGTTCCGCGATGACGGAGAATTCCTCGCTGAAGTCCGGTGGACCGGCGCCAACAATGGCCTACCCCAGGGCAATCCATCCGATGTTCTTGGACGCTATGTACCGACTAGAGAGACCTCCACACCCTCACCCACCGCCCGTCTTCCCTTCTTACGCGCATGCACCGGGTGTGGACGAGCGGTTACTGCCCTCATCCTTCGGTCCACACAGAGGAGTAGCTTTCCCTTTCCTAGGACCACCACCTAGGCCGTACGATTTGCTTCGGCCACCCCCTATGCCCAACTTCGGTAAGCCGTACCACGACGTACTTAATGTCGGTGCCCTCGGAACCGGTGGAGGAGGAATAGGTAGTGGCGgcggaggaggaggaggtggaggTGGTGGCGGAGGAGGCAGCGGCGGAAAGGCAAGAGGTGACCGATACTCTTGCAGATTCTGCGGAAAGGTATTTCCCCGTTCTGCAAACCTCACTCGCCACCTTCGTACCCACACTGGGGAGCAGCCGTACAAGTGCAAATACTGCGAGAGGTCCTTCTCGATATCGTCCAATCTTCAGCGTCACGTCAGGAATATCCACAACAAGGAGAAACCCTTCAAGTGTCCGCTGTGCGACAGGTGTTTCGGGCAGCAGACGAACTTGGATCGCCACCTGAAGAAGCACGAAGCGGGGGAAGAGGACATGGATGGCATCGGGGGAGTCGGGCCGAGCAACGGGGCGGAAGGTACGGGTCATAACGTGGCGACGCCGGACAGTCCTGGGGCCAGCAGCAACGAGGACGCGTACTTTGACGAGATACGTTCCTTCATGGGAAAAGTTACGTATAACAGTGAATTGCCCCATTCTCTCCCATCCCCTCTTCCTACACCAAACCACTTGTCCGGTCATTTAGGAACTAGCGCCTTAGTGGGCGTACAACCGGCTGCTCAGTCCATTGCTCACATATACTCCCATCAGCAACAACCTTATGCGGAAGAGCAAGACCAGGAATCGGACCTCAGTGGTGACGATTCTGGTGCGGCTTATGAGGTTAAAATGCAGACTGGGAGCCCCAATGTAAGGGGACGTGGAGGAAGCCCCGTGAAAGCGGTGGAGGATTCCAAGGAAAGGTCTCCGCATCCTGCAGCTCCCCAAAGCAACGAGCCCATTCAGGTGACGAGTTAG
Protein Sequence
MSSVKGFFPFTRPLHPNAALEHGEVRRDGATSYKDSLDHHLVSVHKYLPNKYPCEFCDHGYCWKPNLIQHKILIHRILADEERKHLLGGSGDVPLGYGQSPGQADSSASATASSVNSPATVSSEHYPQRRYVCENCGKVFSDASNLQRHIRTHHAGARCHACAECGKTFATPSGLKQHAHIHSSVKPFRCEVCLKAYTQFSNLCRHKRMHANCRTRVQCPSCHQGFSSLNSLAKHKRFCETPSGEETAIRRSSTADEAAAVNGRAEQRHRPPPPLPPPPPPPPPPPPPSPSINFTAMNNINQTPLNNASLLLYPRPFANFPTSLVNPFPIFPQPPPPHGHQAPPQYPNPFLASTLLFAPHAVGQKGRDGEDSIMASQYPLLPPPPPLPLSVRRSGLENGDGKAAPEANNDEEEWNTKEKEESKRTKSSSDAQSNKKEGNQSNDKDENEECEEECVEEEEEEEDGPRDLSSRPSSARNVTTSSESQVELPLDLRVTKRRWSSTEKAPTAGGKMMKENHARQLSDNQPQPPPPPPPPPPAPSHPSLLPPPSVSSAMTENSSLKSGGPAPTMAYPRAIHPMFLDAMYRLERPPHPHPPPVFPSYAHAPGVDERLLPSSFGPHRGVAFPFLGPPPRPYDLLRPPPMPNFGKPYHDVLNVGALGTGGGGIGSGGGGGGGGGGGGGGSGGKARGDRYSCRFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEAGEEDMDGIGGVGPSNGAEGTGHNVATPDSPGASSNEDAYFDEIRSFMGKVTYNSELPHSLPSPLPTPNHLSGHLGTSALVGVQPAAQSIAHIYSHQQQPYAEEQDQESDLSGDDSGAAYEVKMQTGSPNVRGRGGSPVKAVEDSKERSPHPAAPQSNEPIQVTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01402264;
90% Identity
-
80% Identity
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