Basic Information

Insect: Pachydiplax longipennis
Gene Symbol: prdm10
Assembly: GCA_036926295.1
Location: JAVFKF010000002.1:34497547-34518052[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.11 46 7.0 0.2 2 23 321 342 320 342 0.94

2 15 1.4e-05 0.0058 19.2 1.4 1 23 367 389 367 389 0.96

3 15 0.0014 0.54 13.0 5.5 1 23 395 417 395 418 0.96

4 15 0.015 6.1 9.7 0.5 3 23 446 466 445 466 0.96

5 15 0.054 22 8.0 0.8 3 23 516 536 514 536 0.92

6 15 5.2e-05 0.021 17.5 1.2 1 23 552 574 552 574 0.98

7 15 0.038 15 8.4 0.9 2 23 583 604 582 604 0.96

8 15 0.0084 3.4 10.5 0.2 1 23 610 632 610 632 0.97

9 15 2.2e-05 0.0089 18.6 1.9 1 23 638 661 638 661 0.98

10 15 0.00044 0.18 14.5 0.3 1 23 666 689 666 689 0.96

11 15 0.00013 0.054 16.2 3.3 1 23 694 716 694 716 0.98

12 15 5.2e-06 0.0021 20.6 2.1 1 23 722 745 722 745 0.94

13 15 0.0069 2.8 10.8 1.6 1 23 780 803 780 803 0.97

14 15 0.00021 0.085 15.6 2.2 1 23 825 848 825 848 0.97

15 15 0.0071 2.9 10.7 5.5 1 23 886 909 886 909 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.11	46	7.0	0.2	2	23	321	342	320	342	0.94
2	15	1.4e-05	0.0058	19.2	1.4	1	23	367	389	367	389	0.96
3	15	0.0014	0.54	13.0	5.5	1	23	395	417	395	418	0.96
4	15	0.015	6.1	9.7	0.5	3	23	446	466	445	466	0.96
5	15	0.054	22	8.0	0.8	3	23	516	536	514	536	0.92
6	15	5.2e-05	0.021	17.5	1.2	1	23	552	574	552	574	0.98
7	15	0.038	15	8.4	0.9	2	23	583	604	582	604	0.96
8	15	0.0084	3.4	10.5	0.2	1	23	610	632	610	632	0.97
9	15	2.2e-05	0.0089	18.6	1.9	1	23	638	661	638	661	0.98
10	15	0.00044	0.18	14.5	0.3	1	23	666	689	666	689	0.96
11	15	0.00013	0.054	16.2	3.3	1	23	694	716	694	716	0.98
12	15	5.2e-06	0.0021	20.6	2.1	1	23	722	745	722	745	0.94
13	15	0.0069	2.8	10.8	1.6	1	23	780	803	780	803	0.97
14	15	0.00021	0.085	15.6	2.2	1	23	825	848	825	848	0.97
15	15	0.0071	2.9	10.7	5.5	1	23	886	909	886	909	0.96

Sequence Information

Coding Sequence: ATGGAATTGTTTCCAGAGGGAGAACTATTAGATATCGAAAGCGTTGAGCTTGTTATCTGTGATAACACTGAAAACTGCCTAGCTGACTTAGTTGGGGAGCAAGATGCTAATGATTTGGCTGCTGTAGTCCAGAGGGAGGTTGAAAATGAGATCGTGGGGCAGAATGTTGGAAACGGAAACCTGCCATGTCCGACAATGGTGGATACTTCCTCAGGACAAAGCACAAACATCCAACTGCCTGTTGTTGTGCCTAGCATTGCAACAGATGTCAAACCTACATCACTTGGAGGAATGGCCAGCAGTAACGTGAATACGCCATGCACTGCTAATACTGTGCCCGAAAAGACCCAAGGAATATTACAGAACAATCAGTGTCACCTTAACAATTCTGTTATTGCAGAAGAACTGGATGCAGGTTGTGATGATTGTGACTTTTCATATGGAAAAGAATGCTCGAAGCACAAAATTCAGACAATCTCAGATAAGCCAGTTCCTTCTAGAGCGTGGGCTACTCTTCCAGCTGCTTATTTGATGATCACTAAGGTGGCATCTGAGTCAGGTGGAAAGGattttggTGTTTTTGCTCGCAAAACAATACCAAAGAGAACTCAGTTTGGTCCTGTTGAAGGAGTTGCAACACCCAAAGAATCTGCTGCAAATATCCATCATAAAGTAGAGTTGTTGTTGGAGAATGAGCAAGGAGAATTTCTGAAGTTGGATGTGTCAGATGAAAATACTTCCAACTGGATGAGATTTGTTCGACCAGCAAAGTCCTTCAAAGAAATCAATCTCATTCTAAGCCAGCAAGGGCATTCTCTATATTTTACCACAACCAGATTGATTCACCCTAGGGAGGAGTTGCTTGTATGGTATAGTTTGCCTTACGCCCAAAGAAGAGATCTACCTATGCTATCTCCTGATCCAGAAGAAAAGAAGCttGAGGATGCAGAGGTTAATTGGCCATGTTTCGAGTGCAATGATCGTTTTCTTTCGTCTGAGGAGCTTCAGAGGCATCTCAATGAGCATGAACAGGGTGAAGAAATCAAATCTTCTAAATCCAAATCAAAAGGATCTAATAAGAGGATCACTACAGCAGAATATCGCTGCCAAACTTGCAACCGAATATTTCCTAGAAACTACAGTCTTAAGAGGCATCTCGTTCTTCACACTGGAGAGAAAAAGTACTCCTGCAACATATGTGGATTGCAATTTTCTCACCCCTACAACAAAGACAGACATTTCAGAAAGCATCACAAAAAGGTAGAAGATCCACctccaaagaaaaattctgatggttcaaaaaataattcaaaaggGGCATCTAGTGAATGGTTGTGTGTGCACTGCAGTCTATCATTTGACTCACCTTCACTACTTAGTTTACACACATTAGCTCATGCAGCAGAAAACCTTGAAGGACAATTTGAAGGTGATTTGAACAAAGCCTTAGATGAGGCTTCCAAGATGGTTGATGCACTCTCCTATAGTTCTCCAAATGGTCGCCCAAAAAGAACAGGTCCAGATTTGGAAAATTGCTCCTTGTTTTGTCCTCAGTGCACACAGgaatttcattctaagaaAGAATTGGTTCTTCATGCATCAGCTCATGGTACAATACGCCGAAGCAGGAGTTCGTTAAATCCTGCTAAACCTCATAAATGTGAGCTTTGTTACAAAGCATTTGCTTCTGAAGATAGATTACAGAAACACATGCTAGTTCATGGAACAGAGGAGTCAAAACCTTTACAATGTGAGGTTTGCTCAAAGCGTTTTCTGAACAACTCAGCCCTTGCTTGTCACATCAAAGTACATACAGagGAGAAGACTTTTGAATGTCCAATTTGTAGAGAAATTTTCTATCAGGTATTAGCTCTTAAAGAGCATGTGCACGTCCATTGTCATGAAGGAGTTTTTACTTGCCCTCATTGTGGCAAGGTGTTTGAGGAATACAATCTGGTCCGCAAGCATGTGCGGACCTTTCATAGTGACAGACGATTCCCGTGTAATCTGTGTGAGAAGGTATTTGATGAGTACAGTCTCATCCGTAAACACATTCGAGCATTCCACAGTGAGAGGAAACATAAATGCTCGTTCTGTGGAAAGTTATTTCCAACTATGGACAAACTAAAAACACACATGTTGAGACATTCAGACCACAGAGAATTTTTATGTGCTAATTGTGGAAagcaatttaaaaggaaagataagCTGAAAGAGCATATGAAGCGAATGCATTCTCCAGAAAGGGAAGCAAAACTTTCAGCTAAACCAGCACGTCCACCtaataagaagaaattcatCCCAAAGGTGTCTCCTACGGACTACCAGcgttttatttacaaatgtcATTCTTGCCTTGTTGGATTTAAAAGACGTGGAATGTTGGTGAATCATCTTGCCAAAAGGCATCCAGATGTAAGTCCAGATACCGTACCAGAGCTTAATTTGCCCATTCTCAAGACAACAAGAGATTATTATTGCCAATACTGTGAAAAggttTATAAGAGTAGTTCCAAAAGGAAGGCTCACATTCTGAAGAATCATCCTGGAGCCGAGTTGCCTATGAGTAACAGAAAGAAGGGTGGAACCACTGAAGCACTTGGATTTCCCAACCCCACATACTCTCAAACTGTTGGAAGCATAACAACACATGCTCATAATTGCACATGGTGCCATAAACAGTATGCATCAAAGCCCAAGTTGTTGCAACATCAGAGAAAGAAGCATCTTGACCTACTTCCTCAATCCCAGCAGGTTCCTCGCACTATGCGTACAGATAGTGTGGATTCACCTATGTCATCTTTGGATGGGAAGTTCCTCTCTGGCCAAGATGAATCTCATGTTATACATATGCAAGATGGTGACACTATCACTTCAGATGTGAATGTTTCTGTTGAATATGAAGCAGCAGTTGATGAAAAACTGAGAGAATATCAAGAAGCTGGGATTATAATTGATGCTGCCTCTCTAAAACAGTCTCTTAAGGCTGTTACAGAAGATGGTGGAATCCCTTCAACCGATCTTTTGGCTCAGGCAATGTCAGAACTATCTGAGAATCCAACAGAATACAGATTGTTCTCAAGCTCTGagcattatttcaaaataattcatgcTGCACCCACACACATAATGGTAGCAGCTACAGAAACTCTCCCATTGTCTCCTTGTCCATCTCCAGTCGTGGTGCCCTCTCTTCCTTCTCCTGAAACAGGAAGTGGAGGTGGTCTTACAATGCAGAACTCTCCCACTGCTGCCACCTTGCTCACTCCATCCACCCTCTCTGTTCATGCTCCTTCCACACCTGATGCTGCCGACAATTCCTCATCATCATCTCTTTCTTCACTCACCTCTGCTTCATCCACTCTTACCTCTACCTCCTCTTCTGTTTCCACTTTCCTCACTCCTGTCTCTGTATCCGTCTCGTCATCTCTCTCCATCGACTCTCCTCAGATGCAGAACATGATGACTTGCAATCCAGCATATACCACCAACACTCTGCCACCGACGTCGTTGTCACCATCTCCTAGTGTACTGCCACGTACTTGGGCAGCAACCTACACTTCGTACACCGCTCGTTGA
Protein Sequence: MELFPEGELLDIESVELVICDNTENCLADLVGEQDANDLAAVVQREVENEIVGQNVGNGNLPCPTMVDTSSGQSTNIQLPVVVPSIATDVKPTSLGGMASSNVNTPCTANTVPEKTQGILQNNQCHLNNSVIAEELDAGCDDCDFSYGKECSKHKIQTISDKPVPSRAWATLPAAYLMITKVASESGGKDFGVFARKTIPKRTQFGPVEGVATPKESAANIHHKVELLLENEQGEFLKLDVSDENTSNWMRFVRPAKSFKEINLILSQQGHSLYFTTTRLIHPREELLVWYSLPYAQRRDLPMLSPDPEEKKLEDAEVNWPCFECNDRFLSSEELQRHLNEHEQGEEIKSSKSKSKGSNKRITTAEYRCQTCNRIFPRNYSLKRHLVLHTGEKKYSCNICGLQFSHPYNKDRHFRKHHKKVEDPPPKKNSDGSKNNSKGASSEWLCVHCSLSFDSPSLLSLHTLAHAAENLEGQFEGDLNKALDEASKMVDALSYSSPNGRPKRTGPDLENCSLFCPQCTQEFHSKKELVLHASAHGTIRRSRSSLNPAKPHKCELCYKAFASEDRLQKHMLVHGTEESKPLQCEVCSKRFLNNSALACHIKVHTEEKTFECPICREIFYQVLALKEHVHVHCHEGVFTCPHCGKVFEEYNLVRKHVRTFHSDRRFPCNLCEKVFDEYSLIRKHIRAFHSERKHKCSFCGKLFPTMDKLKTHMLRHSDHREFLCANCGKQFKRKDKLKEHMKRMHSPEREAKLSAKPARPPNKKKFIPKVSPTDYQRFIYKCHSCLVGFKRRGMLVNHLAKRHPDVSPDTVPELNLPILKTTRDYYCQYCEKVYKSSSKRKAHILKNHPGAELPMSNRKKGGTTEALGFPNPTYSQTVGSITTHAHNCTWCHKQYASKPKLLQHQRKKHLDLLPQSQQVPRTMRTDSVDSPMSSLDGKFLSGQDESHVIHMQDGDTITSDVNVSVEYEAAVDEKLREYQEAGIIIDAASLKQSLKAVTEDGGIPSTDLLAQAMSELSENPTEYRLFSSSEHYFKIIHAAPTHIMVAATETLPLSPCPSPVVVPSLPSPETGSGGGLTMQNSPTAATLLTPSTLSVHAPSTPDAADNSSSSSLSSLTSASSTLTSTSSSVSTFLTPVSVSVSSSLSIDSPQMQNMMTCNPAYTTNTLPPTSLSPSPSVLPRTWAATYTSYTAR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01385061;
90% Identity: -
80% Identity: -