Basic Information

Insect: Pachydiplax longipennis
Gene Symbol: Prdm15
Assembly: GCA_036926295.1
Location: JAVFKF010000026.1:13648773-13663555[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.96 3.9e+02 4.0 2.0 2 23 288 310 287 310 0.92

2 18 0.00089 0.36 13.6 2.7 1 23 403 425 403 425 0.98

3 18 0.17 69 6.4 0.3 1 21 429 449 429 450 0.93

4 18 2.1e-06 0.00086 21.8 0.5 1 23 458 480 458 480 0.97

5 18 0.28 1.1e+02 5.7 3.1 1 20 484 503 484 505 0.93

6 18 5e-05 0.02 17.5 4.4 1 23 522 544 522 545 0.95

7 18 0.0056 2.3 11.1 0.8 1 21 553 573 553 574 0.94

8 18 0.0085 3.4 10.5 0.3 2 23 588 609 588 609 0.95

9 18 0.75 3e+02 4.4 4.1 1 20 613 632 613 634 0.86

10 18 0.0047 1.9 11.3 0.1 2 23 640 661 639 661 0.96

11 18 0.016 6.3 9.7 4.4 1 20 666 685 666 687 0.94

12 18 0.0015 0.62 12.8 0.0 2 23 726 747 725 747 0.96

13 18 7.8e-05 0.032 16.9 3.0 1 23 752 774 752 774 0.98

14 18 6.7e-05 0.027 17.1 0.1 2 23 780 801 779 801 0.96

15 18 7.7e-08 3.1e-05 26.4 0.4 1 23 807 829 807 829 0.98

16 18 1.1e-05 0.0046 19.5 0.9 1 23 837 859 837 859 0.96

17 18 0.019 7.8 9.4 9.2 1 23 865 888 865 888 0.96

18 18 0.02 8.2 9.3 0.9 1 23 893 916 893 916 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.96	3.9e+02	4.0	2.0	2	23	288	310	287	310	0.92
2	18	0.00089	0.36	13.6	2.7	1	23	403	425	403	425	0.98
3	18	0.17	69	6.4	0.3	1	21	429	449	429	450	0.93
4	18	2.1e-06	0.00086	21.8	0.5	1	23	458	480	458	480	0.97
5	18	0.28	1.1e+02	5.7	3.1	1	20	484	503	484	505	0.93
6	18	5e-05	0.02	17.5	4.4	1	23	522	544	522	545	0.95
7	18	0.0056	2.3	11.1	0.8	1	21	553	573	553	574	0.94
8	18	0.0085	3.4	10.5	0.3	2	23	588	609	588	609	0.95
9	18	0.75	3e+02	4.4	4.1	1	20	613	632	613	634	0.86
10	18	0.0047	1.9	11.3	0.1	2	23	640	661	639	661	0.96
11	18	0.016	6.3	9.7	4.4	1	20	666	685	666	687	0.94
12	18	0.0015	0.62	12.8	0.0	2	23	726	747	725	747	0.96
13	18	7.8e-05	0.032	16.9	3.0	1	23	752	774	752	774	0.98
14	18	6.7e-05	0.027	17.1	0.1	2	23	780	801	779	801	0.96
15	18	7.7e-08	3.1e-05	26.4	0.4	1	23	807	829	807	829	0.98
16	18	1.1e-05	0.0046	19.5	0.9	1	23	837	859	837	859	0.96
17	18	0.019	7.8	9.4	9.2	1	23	865	888	865	888	0.96
18	18	0.02	8.2	9.3	0.9	1	23	893	916	893	916	0.94

Sequence Information

Coding Sequence: ATGATTTCACATGCTTCACTAGACGAAACAGTGCCGTCTACTTCCTTGGGAACGGAGCTTAATCTTAAAGGTTGCAATGTCTGTGGTCAAAATCATAGTACCGAATCCTGCCCATTCCTTGGAAATCTGTTTCCGGTCCAGGATACGGAAACGACGACGAAGGCAAGGCTGACTCTACCTGCAAATCTTGAGGTACAAACTTTAGCCGATGGTTCACCAACAGTTGTTGCACGCACAACTTTTGAAAGAGGAACACAATTTGGGCCATTTCAAGCTAGAAAGACCGAAGTTTTACCTCTTTCGGTAGATTTTCCCCTAAAGGTTTTTGGCAAAGATCCTGATGAGGTTTACTATTTGGATACAAGTGATGAAGAATACTGTAATTGGATGTGTTTGGTAGCTCCAGCTACTTTAGCAAAGGAGCAGAATCTTATGTGCTATCAGATGAAGCAGGATATATATTACACTGTGATGAAACGGATTCATCCAGGAGAGCAACTTAAAGTTTGGTATGCACCTTATTACGCCTTGAAAATGGGAGTTGTTCAACCAAACAAGaaaAAGATCAATGCACTAACAGATCATGTCTATGGAACCCAAAGGAAGGAGAAGAAGGTGTCTCAGAATATGCTGTTAAATAAGGAAGTGACAGAAAAAATTGTTGAGAAGTTGGCCCCTCAACAGTTAGGtgctaaaactgaaaatataagcAAGTGGAAATGTCGTCTTTGTGGAGAAGAGCAGGGACAGGAAAGTGGTGAAGAAGGCAACAAAGGTGGAGGAGGAGTTGCAGCCTTTGCTAAGCATTTGATGGCTCATTATAGACCAAGATTGGGAAGGAATTCAAATAACAAAACGTGGTCATGCCATCTTTGTCTGCAGAAATTTCCAGGAGAGAAGgagCTTCTTCACCATAAGGTCAAGGAACACAATGTTGCCATTAGAAGACCCAGGTTGTTAGGTGCTCAAGAAAAACGTGAAGCTATGAATTCTGAAACTTCCAAACGAGGTGAAGGGGATGAGTTGACTGAGCTGGACGAAGAATTTGATTGGCAGGGAGAGGGAAGGAAGACTACAAGCATTGTGATAGCCAGGATACCTGAAGGACAGGAGcctCCTCTAATGCAAGACAAAGATAATACATGTTTGACTATATCAACATTTGAGGCTGATGAGGTAGTTAATGGACTAGAGTTGGGACCTCCATATATCTGTGATATCTGCAGTAAAGAATTTCATAAGGCAGAGTACATGTATCGTCACCTGAGAAAGCATACAGGAGAGTTTACTTGCGTATCTTGCATGGCTgTTTTTGCTCGAAAGGAAAGCCTTCAGACTCATGTTTGTGTGGGAGGAGTTGCTTCCAATCTTTATGCCTGCTCTTACTGCCCTAAAATGTTCTCTGTTCAGAAACTTTTAAACAGGCACATAGCCAAGCACAAAGgagAATTCATGTGTCAGCGTTGTAAACGTGTCTACTCATCAAAGCTCTCCTTAGATTCTCATCATTGTgcgaaagaagaggaagaaaataatactGCTAGTGACTCAAGAACAAAAGGTTTCTCATGCTCCCTCTGTGGAAAAGGTTTTGTGAACCAGAATTATCTCCAGCGCCACTTAACTCATCATCACCCAAATGATGAGCCTGTTGGATACCACTGCCAATATTGTGAGAAGAGCTTTGACTTAAGTGAACCTCTCAATGAACATCAACAATACTGTGAACAGgcAAAGCAGTTGGATGCTGGTAATCAGGCAACCTGTCCAGTTTGTAAGAGTGTTTTTGAGGATACATCATCGTTTAGAAGTCATGTATTAGATCATACCCATCCATTTCTCTGTCAACATTGTGGTGCTCGTTTTCGAACGAGAAAGTCCTCAAccaACCACACATGTAATCCACTAAATCCTTTAGAATGTGAAGTGTGCCAGCAGGAATTTAAAGCACTGCCAGCCCTAAATCGTCATTTAAATCAACATGGTGTTGCATCATTCCATTGTTTTGAGTGTGGTCGCAGTTTCTTTCAGTCTGAAAAATTTGAGAAGCATGAGTGTGGAGCCAACATAGGAGTTCAGGATGACtttaaatcaagaaaaagaaaagcgaAGGCTACGAAGGGCAGTGGCAAAGAAAGTGCAGGTCCATCAGTATCAGAAACCAATACAAGTCTAGTCTGTGAAGTATGTGGTGCGCAATACAAAACTGTCTACAGCCTCAGAGCTCATGTACAGTTACATGGGGAGAGAAGATTTGAATGTGATATTTGCCACAAGCGCTTCCACAGGAAGGATGTATTACAGGAGCATATTTCTGTTCATCAAGATCCTCAGATTCCATGTCCAGTCTGTGAGAAGAAAGTCAAAACCAAAAAATCTTTGGAAGTTCATATGTTACTTCATAGTGGTGACAGGAGGTATAAATGTGACGAATGTGGAAAGGAGTTTTATCAGAAGGGAAACTTGCAAAAACATTTGGCTGTTCACGAACCCATATCAAAGAAAGCTCATCCATGTCCTCATTGTGGGAAGATGTTCATGTCTCGGGATTATTTGGCTGTCCATCTTCTGGAGCACACTCAGGGCAAAGTGCATCAGTGTTCTCTTTGTAATAAAGCATTCGTCAAGGAACATCTACTAAGAACTCATCACAGACATTATCATAACAATCAGTTGTATGCCTGTCGTTATTGTGGTCAGTCCATGCGTTTGCGTCAAAGTCTTCGAAGGCATTTGGTGAGTCGGCACCCTGAACACCAAGCAGAATGGAACTGTATTGGTGCACTTGATGCTATGCTGACATCATTGGGAGATTCCTCTGCTACTACTGTGAAACTTGGAGTGTCGGCTCCACAAGCCTCATCTTTGGCAGTACATTCCAGAACCAGTTTTGTAGATGTTGCTGAAAGTGCTGAAATACTACTGACCGTTGCTGCAGGTATTCACACAATGGATGGTGTTGAGCAAGTGGTTTCTGGATTGAGTCATAGTGCAGATGAGGACAATTCAGAGACAGTAGTAGGCAAGATGGAACCTCTTGTGATAAGTGGAACTGAAGCAACTGTCTGTGGAACTGTTGGTCAAGAGGGTGTTGTAGTGAATGATGACCTTGCATGTCTTGCTGGAATATCTTCTGCTACTGAAGTTATTGCTGAGGTTCCAACTGACGAAGTACCACTTACAGGTCACACATTCATTTTAGAAGATGGCACCATCATTCAGCAAGATGGAAACAACTCAGCTGACATTCTTCTGTGTGTTTTAGGCACCGATATCCAACCTGCTGATTTGAATTTAGAATAG
Protein Sequence: MISHASLDETVPSTSLGTELNLKGCNVCGQNHSTESCPFLGNLFPVQDTETTTKARLTLPANLEVQTLADGSPTVVARTTFERGTQFGPFQARKTEVLPLSVDFPLKVFGKDPDEVYYLDTSDEEYCNWMCLVAPATLAKEQNLMCYQMKQDIYYTVMKRIHPGEQLKVWYAPYYALKMGVVQPNKKKINALTDHVYGTQRKEKKVSQNMLLNKEVTEKIVEKLAPQQLGAKTENISKWKCRLCGEEQGQESGEEGNKGGGGVAAFAKHLMAHYRPRLGRNSNNKTWSCHLCLQKFPGEKELLHHKVKEHNVAIRRPRLLGAQEKREAMNSETSKRGEGDELTELDEEFDWQGEGRKTTSIVIARIPEGQEPPLMQDKDNTCLTISTFEADEVVNGLELGPPYICDICSKEFHKAEYMYRHLRKHTGEFTCVSCMAVFARKESLQTHVCVGGVASNLYACSYCPKMFSVQKLLNRHIAKHKGEFMCQRCKRVYSSKLSLDSHHCAKEEEENNTASDSRTKGFSCSLCGKGFVNQNYLQRHLTHHHPNDEPVGYHCQYCEKSFDLSEPLNEHQQYCEQAKQLDAGNQATCPVCKSVFEDTSSFRSHVLDHTHPFLCQHCGARFRTRKSSTNHTCNPLNPLECEVCQQEFKALPALNRHLNQHGVASFHCFECGRSFFQSEKFEKHECGANIGVQDDFKSRKRKAKATKGSGKESAGPSVSETNTSLVCEVCGAQYKTVYSLRAHVQLHGERRFECDICHKRFHRKDVLQEHISVHQDPQIPCPVCEKKVKTKKSLEVHMLLHSGDRRYKCDECGKEFYQKGNLQKHLAVHEPISKKAHPCPHCGKMFMSRDYLAVHLLEHTQGKVHQCSLCNKAFVKEHLLRTHHRHYHNNQLYACRYCGQSMRLRQSLRRHLVSRHPEHQAEWNCIGALDAMLTSLGDSSATTVKLGVSAPQASSLAVHSRTSFVDVAESAEILLTVAAGIHTMDGVEQVVSGLSHSADEDNSETVVGKMEPLVISGTEATVCGTVGQEGVVVNDDLACLAGISSATEVIAEVPTDEVPLTGHTFILEDGTIIQQDGNNSADILLCVLGTDIQPADLNLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01385060;
90% Identity: iTF_01385060;
80% Identity: -