Plon036777.1
Basic Information
- Insect
- Pachydiplax longipennis
- Gene Symbol
- Zfpm1
- Assembly
- GCA_036926295.1
- Location
- JAVFKF010000009.1:13503704-13505419[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 6.3 2.5e+03 1.5 3.6 1 23 91 114 91 114 0.95 2 14 4.6e-06 0.0019 20.8 0.4 1 23 192 215 192 215 0.95 3 14 0.011 4.3 10.2 0.8 1 23 220 243 220 243 0.98 4 14 4.2e-07 0.00017 24.1 1.6 2 23 246 267 245 267 0.97 5 14 1e-05 0.0041 19.7 1.0 1 23 273 295 273 295 0.99 6 14 7.2e-06 0.0029 20.2 6.3 1 23 301 323 301 324 0.96 7 14 0.61 2.5e+02 4.7 2.7 5 23 337 355 335 355 0.97 8 14 0.00048 0.19 14.4 2.8 2 23 361 383 360 383 0.96 9 14 0.0038 1.5 11.6 0.2 2 23 399 419 398 419 0.97 10 14 0.00057 0.23 14.2 0.1 1 20 425 444 425 447 0.94 11 14 0.0022 0.89 12.3 1.0 1 23 455 477 455 477 0.99 12 14 0.0022 0.88 12.4 4.4 1 23 483 505 483 505 0.97 13 14 3.3e-05 0.013 18.1 6.8 1 23 511 533 511 533 0.98 14 14 3.3e-06 0.0013 21.2 2.2 1 23 539 561 539 562 0.96
Sequence Information
- Coding Sequence
- ATGCCACTCACATCTTATATTGTCTTTTCTGGTCAGTTATTTCCTGCATCTGCTCGCCAAGGGGCAGCCCAAGCTGATCTTATGCCAGGAAATGGTGAAACTTGGACCAGTGGTTCTCCTTTCAAAAGAAGCCAAGAGAGTAACATTGGAGGTGCTGTTCCAGAGACAACAGCAACAAAAAAGAGACAGCGCCCTAAGAAGAATGCCAGCAGCACTGTAGGTGCATCAAAGGACACCAGCAATGCTTCCAAAACAAAGGCAAAACGCTTGTATCATTGCTGGAATTGTCTAGAGGTGTTTAACTGTCCCAAGGAGAGGAGAGTCCACCAAAGAGAGAAGCATAATGGTGAAAAGACTGTGGGCATGACACCAGAAATAGAATCGGCAGTGGCCCCCATGGAACCTGTACCGGTGAAAGAACAGGATGGACTGACTGAATTGGACACTCCAGTGGTGAAAAATGAGGAGAAGGATGATAAGAGCGAAGTAAGGGAGACTGTGGAAAGGGAGAAAAACAAAGTCACCATTAATGTGAAAGGGGATAAGGAGGAGTTAGAGAGTATGAAAGCCTCTCATCCATGCTCAGACTGTGACAGGTCATTCCCCTCTCTACGTTCCCTCACAGCCCATCGTAGAGCTGCTCACAGAGATTCAAGGTTCAAATGCCCCACATGCATGGAAAAATTTCTAACATCAGTGGACTTTACCAATCATGTGAGGACTGTGCATCCCTTGGAGTGCTCTATGTGTGGAAAGCAGTTCAGTAGACAGCAAAACCTTCGTCTTCATCTCAAGAGACACTTGAGTGTGCGCCCATACAAGTGCACTCAGTGCGACAAGGCTTTTGTTACAAACCAGAAGATGGAGGAGCATCTGAATTCTCACACAGGACGCACCCCTTTCCAGTGCCCTCTCTGTCCAAGGGCATTCCGTCGTCACAGCAACCTAATTCAGCACCGTAAGCACCATCACATGAAGGTGAAGAGGAAAGTGAAAGACTTCTTCTGCCACTGTGGTGCAGTATTTCACTCTGTCAAGAAGCTGGAGTGGCACAAGGAGACACATGAAGACAAGCCCAAGACCTGCCCTCATTGCAGCGACCGGTTTGTCCACAAGGCAGGTTTGACAAGGCACATTAGGCAGGTGCATGATAAACGTTATGTGCCAACTGGTGCGAGAGAAGATGTGAACGTAGAATGCCCTGTCTGTTCAGCCGTATACCTCAAGTCATCTCTTCATATCCATATGAGGGTTCATTCTGGGGAGCGGCCATTTTCATGTGGGATCTGTGCTAAAGGTTTTGCCACCAAGTGGAATCTTCAGCTGCACCGTTGGGTCCATGCAAGTCCCCATTCAAAACCTTTCAAATGTGCAACATGCAAGGCAGCGTATCATCGCAGGGTAGACTATGTCGCTCACATCCGCTCTCACAGAAAAGTAAGGCCATACGTGTGCAACACTTGTGGCAGACGATTCATGCGCAAGTACAACTGCGTGCGTCATTCCCGGGAGCATGAGACAGGAAAGAAATTCGAGTGTACCGTATGTCACAAGCGTTTCCACAGGCGTTATTACCTGAAAGAGCACCTCAGAATTCACACTGGGCTCCGTCCTTATGTCTGTCATGTGTGTGGGAAAGCTTCCGGCACAAAGTCCAACATGAACAAGCATGTTCGCATACACCATGCGAGAGAGCCTGTCAACACAGAGGGGTAG
- Protein Sequence
- MPLTSYIVFSGQLFPASARQGAAQADLMPGNGETWTSGSPFKRSQESNIGGAVPETTATKKRQRPKKNASSTVGASKDTSNASKTKAKRLYHCWNCLEVFNCPKERRVHQREKHNGEKTVGMTPEIESAVAPMEPVPVKEQDGLTELDTPVVKNEEKDDKSEVRETVEREKNKVTINVKGDKEELESMKASHPCSDCDRSFPSLRSLTAHRRAAHRDSRFKCPTCMEKFLTSVDFTNHVRTVHPLECSMCGKQFSRQQNLRLHLKRHLSVRPYKCTQCDKAFVTNQKMEEHLNSHTGRTPFQCPLCPRAFRRHSNLIQHRKHHHMKVKRKVKDFFCHCGAVFHSVKKLEWHKETHEDKPKTCPHCSDRFVHKAGLTRHIRQVHDKRYVPTGAREDVNVECPVCSAVYLKSSLHIHMRVHSGERPFSCGICAKGFATKWNLQLHRWVHASPHSKPFKCATCKAAYHRRVDYVAHIRSHRKVRPYVCNTCGRRFMRKYNCVRHSREHETGKKFECTVCHKRFHRRYYLKEHLRIHTGLRPYVCHVCGKASGTKSNMNKHVRIHHAREPVNTEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -