Basic Information

Insect: Pachydiplax longipennis
Gene Symbol: -
Assembly: GCA_036926295.1
Location: JAVFKF010000004.1:14817160-14831656[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00041 0.16 14.7 4.1 1 23 245 267 245 267 0.97

2 11 1.3e-05 0.0051 19.4 1.5 1 23 273 295 273 295 0.98

3 11 0.00014 0.055 16.2 2.4 1 23 301 324 301 324 0.96

4 11 0.016 6.4 9.6 3.9 1 21 330 350 330 352 0.95

5 11 0.00013 0.051 16.3 1.9 1 23 358 380 358 380 0.99

6 11 1.4e-05 0.0057 19.2 1.2 1 23 386 408 386 408 0.98

7 11 0.00032 0.13 15.0 1.4 1 23 416 439 416 439 0.97

8 11 2.5e-05 0.01 18.4 2.3 2 23 446 467 445 467 0.97

9 11 9.5e-05 0.038 16.6 0.6 1 23 473 495 473 495 0.98

10 11 1.8e-06 0.00074 22.0 2.7 1 23 501 524 501 524 0.96

11 11 7.8e-08 3.1e-05 26.4 0.7 1 23 538 560 538 560 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00041	0.16	14.7	4.1	1	23	245	267	245	267	0.97
2	11	1.3e-05	0.0051	19.4	1.5	1	23	273	295	273	295	0.98
3	11	0.00014	0.055	16.2	2.4	1	23	301	324	301	324	0.96
4	11	0.016	6.4	9.6	3.9	1	21	330	350	330	352	0.95
5	11	0.00013	0.051	16.3	1.9	1	23	358	380	358	380	0.99
6	11	1.4e-05	0.0057	19.2	1.2	1	23	386	408	386	408	0.98
7	11	0.00032	0.13	15.0	1.4	1	23	416	439	416	439	0.97
8	11	2.5e-05	0.01	18.4	2.3	2	23	446	467	445	467	0.97
9	11	9.5e-05	0.038	16.6	0.6	1	23	473	495	473	495	0.98
10	11	1.8e-06	0.00074	22.0	2.7	1	23	501	524	501	524	0.96
11	11	7.8e-08	3.1e-05	26.4	0.7	1	23	538	560	538	560	0.97

Sequence Information

Coding Sequence: ATGAGTCAAGGAAAGAACAAAGCGCAAGTTCTTGCAACTTGTACCAGCCCATCGCAAACGTTCACTACAGCTCACATTAAAATGGAAGGCCAAGATGGAGAAACTATtactgaaattcaaaattacctGGAGACGTTCAATAAAGAGATTCAAGGAGGAGATCAGACTGGACAAGCTTCAGATGGACAACACGTTGGGAATGCAGCCAGTCCACCAGAGGGGACCTACTTTGTAGATCAGTCTGGTCAGTATTACTATCAAGCTAGTGGGGACCAGCAGCAGGTTATGACAGTTGTTTCAGaccCAGATGGAAATGGAACTGGGGAAAGCATATCAATATCAATTCCTGGAACAATTGGAGACTCTTCAGATGGAACGCAGGAAACAACTTATGTGGCAATGCAACCACAAGATGCACATGCTGTTGATGGTGCCATGGCAACATTAGATGATGATgcTGGAGGTTCTGATGCAAATGGTCAAGTTATCTTGAATGCTGGTGATGCTTACCAAACAGTCACTATTGTCCCATCAGATACTAACCCCGGAGAAGTAAGTTATGTACTTATTGTGCAGCAGCCAGATGATAAAGATGATAAGGATGACCAAGATCTTACTGTTTATGATTTTGATGAGGGAGAGGAAGGGATGACCATGGAATCTGGTGATGAAGATGACAAatctaaaatcataaaaatcatgcCAAAGAAATCTCAGACGGTCACTCAAGCTCACATGTGCAATTATTGCAACTACACCAGCCCAAAAAGGTATTTGCTCTCTCGACATATGAAATCTCATTCTGAAGAAAGGCCTCACAAGTGCAGTGTTTGCGAAAGAGGATTCAAGACTCTAGCATCTCTGCAGAATCATGTAAACACCCATACAGGAACAAAGCCCCATCGATGTAAATTTTGTGATAGTGCATTTACAACTTCAGGAGAACTGGTGAGGCATGTCCGCTATAAGCACACCCATGAAAAGCCTCATAAATGTACTGAATGCGAATATGCTAGCGTTGAGCTGAGTAAGTTGAAACGTCACATGAGGTGTCACACTGGTGAGCGACCTTATCAGTGTCCACATTGCACTTATGCCAGTCCAGATACATTCAAGCTGAAGCGCCATCTGAGAATACATACTGGTGAACGACCCTATGAGTGCGATATCTGTCATGCTCGTTTTACCCAGTCTAACAGTTTGAAGGCACACAAGCTGATTcatacagCGGGTAATAAGCCAGTGTTCCAGTGTGAACTTTGCCCTACTACTTGTGGAAGGAAAACAGACTTGCGAATTCATGTGCAGAAGTTGCACACATCAGATAAACCACTTAAATGCAAAAGATGTGGAAAGTCATTTCCAGATAGGTACACATACAAGGTCCACAATAAAACACATGAGGGAGAAAAATGCTTCAAATGTGATCTTTGTCCATATGCTTCAATTTCTCAAAGGCATTTGGAATCTCATATGCTTATACACACTGATCAAAAGCCATTCCAGTGCGACCAGTGTGATCAgTCCTTCCGCCAGAAGCAGCTCCTTAAAAGGCATCAAAATCTTTATCATAATCCCAATTATGTTCCTCCTCTGCCGAGAGAAAAAACGCATGAGTGTCCAGAGTGTGGGCGTGCCTTTAGGCACAAGGGTAACTTAATACGTCACTTAGCCATCCACGATCCCGAGTCTTCAGCACAAGAAAAGGCCCTAGCTCTCAAACTTGGACGGCAGAAGAAGATTCAGATAATTGATGGGCAGCAAGTAGAAGTTATGCCTGGAGAAGACGATGAAGATGACGACGAGGATACTGATGCTGAAATGATGGCAGTAGAAGGAAAAGATGGGCAGCAGTATGTTGTCTTGGAAGTTATTCAGCTGCAGGATGGAGATGGTCTTGATCAAGCAGTTGCAGTAGTGGCTGGAGATGGAAGTACACATGGCAGTGTAGAGGATGCTGTTGCTGCCcttcatgatgatgatgaccTGCGTGGGGAACACTACATCACTCCAGATGCACGTCTTGCCGACGATGATGATGTAGTTCACTCTATACGAGCCAAAAGGATGACAAAGAAGGATGCTCAAGCAATAAGGAGAAAGCTTGAAACACAAAAGGATATGCAGAATTGTTTCGGATTTGatgatgatgaagatgatgaaaatCATTCAAGTATGgtggatgatgatgatgatgtagCTGCCAAAACAGCAATCCAGCTGTTAGAGTCAATCAATCAGTAA
Protein Sequence: MSQGKNKAQVLATCTSPSQTFTTAHIKMEGQDGETITEIQNYLETFNKEIQGGDQTGQASDGQHVGNAASPPEGTYFVDQSGQYYYQASGDQQQVMTVVSDPDGNGTGESISISIPGTIGDSSDGTQETTYVAMQPQDAHAVDGAMATLDDDAGGSDANGQVILNAGDAYQTVTIVPSDTNPGEVSYVLIVQQPDDKDDKDDQDLTVYDFDEGEEGMTMESGDEDDKSKIIKIMPKKSQTVTQAHMCNYCNYTSPKRYLLSRHMKSHSEERPHKCSVCERGFKTLASLQNHVNTHTGTKPHRCKFCDSAFTTSGELVRHVRYKHTHEKPHKCTECEYASVELSKLKRHMRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGERPYECDICHARFTQSNSLKAHKLIHTAGNKPVFQCELCPTTCGRKTDLRIHVQKLHTSDKPLKCKRCGKSFPDRYTYKVHNKTHEGEKCFKCDLCPYASISQRHLESHMLIHTDQKPFQCDQCDQSFRQKQLLKRHQNLYHNPNYVPPLPREKTHECPECGRAFRHKGNLIRHLAIHDPESSAQEKALALKLGRQKKIQIIDGQQVEVMPGEDDEDDDEDTDAEMMAVEGKDGQQYVVLEVIQLQDGDGLDQAVAVVAGDGSTHGSVEDAVAALHDDDDLRGEHYITPDARLADDDDVVHSIRAKRMTKKDAQAIRRKLETQKDMQNCFGFDDDEDDENHSSMVDDDDDVAAKTAIQLLESINQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01385056;
90% Identity: iTF_01385056;
80% Identity: -