Plon072226.1
Basic Information
- Insect
- Pachydiplax longipennis
- Gene Symbol
- -
- Assembly
- GCA_036926295.1
- Location
- JAVFKF010000019.1:26650248-26655637[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00048 0.19 14.4 0.1 1 23 519 542 519 542 0.92 2 10 0.24 98 5.9 2.7 1 21 553 573 553 575 0.93 3 10 1.8e-05 0.0074 18.9 3.5 1 23 648 671 648 671 0.94 4 10 3.1e-05 0.012 18.2 0.3 3 23 757 778 756 778 0.95 5 10 1.6e-05 0.0066 19.1 2.6 2 23 802 823 801 823 0.97 6 10 1.5e-06 0.0006 22.3 0.5 1 23 829 851 829 851 0.98 7 10 0.00015 0.061 16.0 4.1 1 19 857 875 857 880 0.91 8 10 9.2e-08 3.7e-05 26.1 0.7 1 23 886 908 886 908 0.99 9 10 4e-06 0.0016 21.0 2.2 1 23 914 936 914 936 0.99 10 10 3.9e-07 0.00016 24.2 1.0 1 23 942 964 942 964 0.97
Sequence Information
- Coding Sequence
- ATGGAAAACCCTGAGAGATCAGGAGAGTTAATGACAAATGTTCAGCTCGTATCTAATCTTGAAGATGAAGAGGTTAAAATAACTCACGATGGGAAAGGAAATCAAGAGGAAGTTAGCCTCATATCCTCAGATGACGTCAATTCTCAGTACATTAACATCCATCCTAGCTCAGAAATAGTGAAAGAGCAACAAGATTCATTATGTGATTGTGATTCTCAGTCTGATACGTTGACAGCGTCAACTCTCTCCGGCAATGGTGGGCAAGGAGGAGAAGAAATGCTTGCACATGTTGTTCAGATACCATCAGGTGCTCTTGTTGTTGACATTATGGAAACGGTTCCTGATAATGGAACAAAAAATCAGACCCATAGCTCTTCTCAGCTTAAAGACGGTGCTTATTATACCACAGCCAGTGCAAGTAACGTCAACAGCCGTGTGACGTTACTGAGTCCAGTTTCTGCTGGTGACGCCAATCACCACCACATCCATCACCATTCTGTTCATCACACAACAGAGTCTTCATTGCCTGTTGTATCTCGGCCGTACATTCCAGAAACAGATGGTCTAGTTGTGGCTGCTGCCTCGGTTGATCACTATAATGAAGCTGCAACCAGCGGAGTGGAGGAAGACTTGCTAACCCATGACCTTACAGAGGAAGACCGTAGATTAGCTGCTGCATTGGTGGCCGTTCAGTTAGTTCAGCAACAAAAGCATCAGCTCCATCAGCAGCAGCAGCAACAACAAATTCAGCAACATTTGCCTGTCTGCGTATCGGACTCAACCAATGTCATCATGAATACCGCAGAAATTCAGGGTTTAATAGGTGTGGGGAAAGGTCACCATCCAGAAGATACTCATGTTGTGGTTACCACTGACAAACCAGTCCCATCCGCAATGGTGGTGGACTACATTCAAGCTGTGGAAGATGGAAGCGTCGTTGGCGGGGGTCATGACAAAACTAATGAAATGGTGGTTTCTCAATCCCGAATCAGAACCAGAGATGTAGACGGTCCATATGGACAGCCCCATCAAGATGACGATTCTTATGCAAAACTTAATGTCATCCTACCCCCACCGAAGAAAGCTCTCATGGGACAGGGAGCTCCTGTTCGTAATCGTCTTAAACGATTTAGGACCGATATGGAAGAATCTACGGTTGTGCATATGCTTGATTCCAATACATCTGTTGTTGATGGAGTGTATGTCACGGTGTCTAATTTGGGAAGCACACTAAAGAACGAGCATGGAGAAGTGATGGATATGATGGACGTGGGGGAAGAAGCTGAGGAACTGGGAGAGGGGATGGTAGAAGAAGGGGATGACGAGGAAGAAATATTGGAGGAGGAGTTGGAAGATGAGGATGAAATGGAAGAAGTTTGTGTGAGGGAAGATCTTGAAGCTCTAGAGTATGAGACTGGACACCCAGATGGAGGGATGGGTCCTTCAGATCGAAGTCTTCCCCATAAGAAGCGAATACCTCCCAAACTTAAAGGTAACCCATTGGGAATGGAGagtgaagagaaaaagaaaaacgccCAAGTGCATGTAAAGTGCTACAAGTGTGAGCTGTGTGGAGTAGGATTCTCTTCccaaaatgaatatgaaaaccACAAAGAGGCAGTGCATTCCCAAGAGCTTGCTGTCAAAAAGAATCCTTTCTCGTGCGAACTTTGTGGCCAAGGATTTGGCAATCAGCTGAAGTTTTTTGAGCATTTAAAGTGCCATTATGAACCACTGTTGGAGAATGATCATGTCCAGCAGAAGGTTAAAGAAGAGGATGCTGAAGTGAAGAATGAAGAGGAAACCCTAGCGCAAGTAGAAAATTCAGGAATGACTCTAGTTGACGAAGGGCATCATCATCCAATGGGGGAGGAGATGGCTCAGAAAGAAATCCACATAATTCACCATCAGGATCAACCTCCAGGTGCTGAACTGCCTGCATTTCTCTGCACCCATTGCAACAAAACATTCCGCAGGCAGAAAGCCTATGAGACGCACATGAATCTGGTCCATGGACCcgaggaagaagaagaggacGAGGAGGATCATCAACATGCGATGAATCACAGTGTTGTGATGGACGAGGTCCAGCAAGCCAACAAGAAACAACCTGAATGGATGCCTGGTCTCATGGATGATGAggatgaagatgatgatgacGAAGACGACTGGGGTGATCACGATCTTGGAGACCGGCGTCGTCGGATGCATAACTCAGGGGGATCCGAACGTGCAGATGGGGATGGCATGGGAATGCATCAAAACATCTGTGATATATGTGGCAGTGCCTTTCCAAGTCGCTCCCAACTAAATCACCACATGCAAGAGGAGCACACGGACGCTATTCCTTCGGGTAGAAAGAAGGCACGCAAAGGGGGAGGCTCACGCAAGGTTGAGCACATGACTTGCTCCACCTGTGGCCGTGTGTTCAATCACAGGAACTCACTGGTTTACCACATGCGCAGCCATACAGGAGAGCGTCCTCACCAGTGCGAGGTTTGTGGAAAGAGCTTCTTCGCTGCAAGTGCGCTCAAAGTTCACATGCGCCTGCATTCTGGTGACAAGCCCTACAAGTGCCAGTACTGTGGTCGCCATTTCCGTCAATGGGGTGATCTCAAGTATCATTGCATATCCATTCACACGGATGAGAAACAGTACCAGTGTGAGTATTGCGGGAAGGACTTTGCACGCAAGTACAGTCTCATTGTACACAGGCGCATCCATACTGGAGAGAAAAACTACAAGTGTGATTTCTGCGAAAAGAGCTTCAGAGCTTCCAGTTATCTTCAGAACCATCGTCGTATTCACACAGGGGAAAAACCTCATCCATGTGAAGTATGTGGTAAACCATTCCGTGTGCGATCAGATATGAAGAGGCATATGCAGACCCATAACAGAGAGACTGTGCAAACCATGACACATCCACAAGCACCTAACGGAGGCCCAGCAGTCGCCTCAGAGGCATCGCCTGCAGAAGCACAGGATGTGCGCCGCATGACTGCATCACCCCACCACCATAACTTGAATGCCTCCAATAATCTCTTAACAGCAGAGCTAGCTGTGAGCACTGGTGCTAATGAAGGAACTGATCCATTGCCTGAGGAGGAGGCTGAAAGCATCCTACCAGATGATGGCCTGGATAACCATCAGTCTGTAGGAACTTCTGCAGCTCAGCATCCAACCTCACAGCATGCCAACACACAACCAATGGACCTCAACCTGGTCCCCAGCAGGGCTGGTGTGTCCATCCAACAGAATCATTTATCAGCTGCTgttacagagcaggtggttcaGGAGGTGCTCCACTATTCCAGAGATCCTCTGGAAGGAGTCAGGGACAATACCAACACTTTGTTTGTGTGGCCCATATACATGACGTAA
- Protein Sequence
- MENPERSGELMTNVQLVSNLEDEEVKITHDGKGNQEEVSLISSDDVNSQYINIHPSSEIVKEQQDSLCDCDSQSDTLTASTLSGNGGQGGEEMLAHVVQIPSGALVVDIMETVPDNGTKNQTHSSSQLKDGAYYTTASASNVNSRVTLLSPVSAGDANHHHIHHHSVHHTTESSLPVVSRPYIPETDGLVVAAASVDHYNEAATSGVEEDLLTHDLTEEDRRLAAALVAVQLVQQQKHQLHQQQQQQQIQQHLPVCVSDSTNVIMNTAEIQGLIGVGKGHHPEDTHVVVTTDKPVPSAMVVDYIQAVEDGSVVGGGHDKTNEMVVSQSRIRTRDVDGPYGQPHQDDDSYAKLNVILPPPKKALMGQGAPVRNRLKRFRTDMEESTVVHMLDSNTSVVDGVYVTVSNLGSTLKNEHGEVMDMMDVGEEAEELGEGMVEEGDDEEEILEEELEDEDEMEEVCVREDLEALEYETGHPDGGMGPSDRSLPHKKRIPPKLKGNPLGMESEEKKKNAQVHVKCYKCELCGVGFSSQNEYENHKEAVHSQELAVKKNPFSCELCGQGFGNQLKFFEHLKCHYEPLLENDHVQQKVKEEDAEVKNEEETLAQVENSGMTLVDEGHHHPMGEEMAQKEIHIIHHQDQPPGAELPAFLCTHCNKTFRRQKAYETHMNLVHGPEEEEEDEEDHQHAMNHSVVMDEVQQANKKQPEWMPGLMDDEDEDDDDEDDWGDHDLGDRRRRMHNSGGSERADGDGMGMHQNICDICGSAFPSRSQLNHHMQEEHTDAIPSGRKKARKGGGSRKVEHMTCSTCGRVFNHRNSLVYHMRSHTGERPHQCEVCGKSFFAASALKVHMRLHSGDKPYKCQYCGRHFRQWGDLKYHCISIHTDEKQYQCEYCGKDFARKYSLIVHRRIHTGEKNYKCDFCEKSFRASSYLQNHRRIHTGEKPHPCEVCGKPFRVRSDMKRHMQTHNRETVQTMTHPQAPNGGPAVASEASPAEAQDVRRMTASPHHHNLNASNNLLTAELAVSTGANEGTDPLPEEEAESILPDDGLDNHQSVGTSAAQHPTSQHANTQPMDLNLVPSRAGVSIQQNHLSAAVTEQVVQEVLHYSRDPLEGVRDNTNTLFVWPIYMT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01504870; iTF_01402251;
- 90% Identity
- -
- 80% Identity
- -