Plon067745.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pachydiplax longipennis
Gene Symbol
-
Assembly
GCA_036926295.1
Location
JAVFKF010000016.1:36337842-36345349[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.038 16 8.4 0.1 1 23 248 271 248 271 0.96
2 13 0.004 1.6 11.5 0.1 1 23 276 299 276 299 0.90
3 13 0.071 28 7.6 0.1 1 23 318 341 318 341 0.92
4 13 4e-05 0.016 17.8 0.9 1 23 346 368 346 368 0.98
5 13 1.3e-05 0.0051 19.4 2.6 1 23 374 396 374 396 0.99
6 13 0.23 91 6.0 5.8 1 23 403 425 403 425 0.95
7 13 7e-07 0.00028 23.4 0.0 1 23 431 453 431 453 0.97
8 13 4.7e-06 0.0019 20.7 0.3 1 23 459 481 459 481 0.99
9 13 5e-07 0.0002 23.8 0.6 1 23 487 510 487 510 0.96
10 13 6.9e-05 0.028 17.1 0.7 1 23 516 539 516 539 0.95
11 13 1.1e-06 0.00046 22.7 1.1 1 23 545 567 545 567 0.99
12 13 6.2e-05 0.025 17.2 0.3 1 23 573 595 573 595 0.97
13 13 0.004 1.6 11.5 0.1 1 23 601 625 601 625 0.92

Sequence Information

Coding Sequence
ATGACTGCAGACACCGAACAGCAGTTGAGTACTGCCTCAAGAAATACGAAGTGTTTCATTTGTAATGCTAGAGTGGGTTCCTCTGTAAGAAGTAGTTATAACTTTTTTCACTCAGATACCGTTACTACTTCTTCGCAAAAACAAGTATATTTTTGTATAGCTTCTATTTTAGAATGCGAACTTCTTGAAGAATCAGTTCACAGTCAGGTAATTTGTAAAAAGTGCTACCGAACTATCAACGAAATAGATGATCTAGAATGTCGTGCTGCCGAGTTAAAGAATGAAATCTGCCTAAAGTATCAGCAGACCTCTCAAAATCGAGGGGAAGATGTATTAGATACTGCCAAAGAGACCTCCATTTCAGCAGAAGGTTATGACGACAAGAACGATGAGGATTATTTAGGCAAAAAGGTTCAGAAAGTTCGCAAAAAAGCTCCCCCTAAGAAATTCAAATATGTCAATCCCTTGAGCAAGAAGAAGGAACTTATCCAAAAGaaGAGCGAAGCCTTCCAAGAGTCCAGCCCAGAGCAGTATTCCACCGAGAATGAACAATTAGAAGCGGATGACAAGGATAATCTGGAGTTGAAATTGGCCGAGCTGTGCGGAGACGAAACAGAGCAACCAAAAACAGAAGAGAACACAGAAGACAAGCCTGAAATAAAGGAGGAGGATATGGAGAAGGAAGGCGGAGAGACATCCGTAACGACTGACTGCAACGTGGTCTCGAAAGAAGGAGATTCCTTCAAGTGCGTGCCTTGCGACCTCAAGCTTTCTTCAGCTTCGGCTGTCCAGAATCATCTGAGACGGGTTCATGGGGTGCGGGCATTCGTGTGCATACTGTGCGGGCAAGAGTTCGATCGGAAAAAAGATTTGTCCCTTCACATGGCCGAAGACCATGGAGAAACACCTAACTTGGACGGAGGAGTGAAGAAAGAGGACGACTCTGTCCTTTTCCTCTGCGAATTCTGCCCGGAGGCTGTAAGCAGTATGAAAGAGCTTCGTGACCATAAAAAGGAAGTTCATGGAAAGGCAAGGCACAAGTGCGAAGTTTGTGGAAAGTTTTATGGCTCACGGAACCTCTTATTGGAGCATATGAACGTTCACAATGGTGTTCGACCGTACAAGTGTGAGTTATGTGAGAAGACATTCGCATCCAGGTACTGTCTGAAAGTACATGTTAAGATCCATGATGCAAGGCCTAGGCCTCATGCTTGTCAAGAATGTGGGAAGACTTTTCTTTGCCTCCAGCACCTACAACAACATGCCAGAACTCATTCTGAAAACAAAGATTTTGTATGTGAAACCTGTGGAAAGGCATTTGCTACTGCTCGTAACTTAGAGGTTCATATGGTGGTACATTCTGGTGCCAAGCCTTTCACTTGTAGTGTGTGCCAGAAGGGCTTTGCTAGAAAGGCTGAGTTAGTGGACCATGAAAGAACACACACAGGAGAAAAACCCTTCCAATGTGAGACGTGTGGTGCCACCTTCAGTCAGAGAAGCAACTTAATATCTCACCGAAGAGCTACTCACTTAGACGATCGTCGGTTCACTTGCGATGAATGTGGGCGAGGATTCAAAAGACGTCGTCTTCTTGACTATCATAGAAAGgCAGCACATACTGGAGAAAGACCTTACACCTGCGAGACCTGTGGTGCCTCATTCGTTTACCCTGAGCACTACAAGAAGCATATCCGTGTCCATACTGGAGAACGACCTTACCCCTGTGAGGTTTGTGGCAAGCGTTTTGGCTCCAGGGACAACCGTAATGCACATCGTTTTGTGCACAGTGATAAGAAACCCTATGAATGTGTTGTCTGTGGAATGGGATTTATGCGTAAGCCCCTCCTCTATGGACACATGCAGTCACAGGGACATCTGCAGGATGCCATAGTGATCAACCAGCCAAGGATTACAAGTGTGTTTGAAGAGAGGCAAAACAATGGGGTGGAAGGAGATGGAGAGTCCAATGGAGGAGAATCTAGCAACCAGGATCAAAGGACACATGCTAGAGTTGTGAAGAGAGTGGCTTACGAAGTTTCTGATAAGAGACCTGTACCCAAGGTGAATATTCTGGAAGGTGAGGAGGTGGACATAGTGAAGGCAATGGATGGTACACCTGAAGAACACGTCTATACAATTTCAACTAAAGACCACATAATCCTGCGTCCTGCAGATGATAGAGAGCATAGGTTACAAACAGGGGAAGAGGAGGTTGAACATCTGATTATTGAAGGTCCTGTGCACTTCAGTGAAGAAGCCGAGATTACCACACTTCAAGGTGTGGCCTCAGCATCAGAAGCTCGCTATCAAAGCATGGTGGTTGATGGAGGAAGCTTAGGAGAAAAAGGAGCCAGAGTTGTTGCTTTGTGCGGTTCGAACGCTGTGGCAACAGCATCACCTCTTGCAGCTGTCCAAACAACTTTAGCTTCAGCGTCTGGGCTAAGTCAGGAACATCTGTCTCCAACAGTGGTTGTGCGCCAAAATGAACAGCCTGTGCATCTAGTTCAGATACGAATTCCATCTGGTGACGATACTGGGAGGGCATGGATTAATTTGGTCAACCAGCAGTGA
Protein Sequence
MTADTEQQLSTASRNTKCFICNARVGSSVRSSYNFFHSDTVTTSSQKQVYFCIASILECELLEESVHSQVICKKCYRTINEIDDLECRAAELKNEICLKYQQTSQNRGEDVLDTAKETSISAEGYDDKNDEDYLGKKVQKVRKKAPPKKFKYVNPLSKKKELIQKKSEAFQESSPEQYSTENEQLEADDKDNLELKLAELCGDETEQPKTEENTEDKPEIKEEDMEKEGGETSVTTDCNVVSKEGDSFKCVPCDLKLSSASAVQNHLRRVHGVRAFVCILCGQEFDRKKDLSLHMAEDHGETPNLDGGVKKEDDSVLFLCEFCPEAVSSMKELRDHKKEVHGKARHKCEVCGKFYGSRNLLLEHMNVHNGVRPYKCELCEKTFASRYCLKVHVKIHDARPRPHACQECGKTFLCLQHLQQHARTHSENKDFVCETCGKAFATARNLEVHMVVHSGAKPFTCSVCQKGFARKAELVDHERTHTGEKPFQCETCGATFSQRSNLISHRRATHLDDRRFTCDECGRGFKRRRLLDYHRKAAHTGERPYTCETCGASFVYPEHYKKHIRVHTGERPYPCEVCGKRFGSRDNRNAHRFVHSDKKPYECVVCGMGFMRKPLLYGHMQSQGHLQDAIVINQPRITSVFEERQNNGVEGDGESNGGESSNQDQRTHARVVKRVAYEVSDKRPVPKVNILEGEEVDIVKAMDGTPEEHVYTISTKDHIILRPADDREHRLQTGEEEVEHLIIEGPVHFSEEAEITTLQGVASASEARYQSMVVDGGSLGEKGARVVALCGSNAVATASPLAAVQTTLASASGLSQEHLSPTVVVRQNEQPVHLVQIRIPSGDDTGRAWINLVNQQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01385051;
90% Identity
iTF_01385051;
80% Identity
-