Plon053479.1
Basic Information
- Insect
- Pachydiplax longipennis
- Gene Symbol
- lolal
- Assembly
- GCA_036926295.1
- Location
- JAVFKF010000014.1:1151932-1159420[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 5.3e-06 0.0021 20.6 2.3 1 23 535 557 535 557 0.96 2 10 7.2e-07 0.00029 23.3 1.5 1 23 563 585 563 585 0.98 3 10 2e-07 8e-05 25.1 1.3 1 23 591 613 591 613 0.98 4 10 7.9e-06 0.0032 20.0 2.5 1 23 619 641 619 641 0.98 5 10 4.1e-06 0.0017 20.9 1.4 2 23 650 671 649 671 0.96 6 10 5.8e-05 0.023 17.3 1.3 1 23 677 699 677 699 0.98 7 10 8.3e-06 0.0033 20.0 1.3 1 23 705 727 705 727 0.96 8 10 9.2e-06 0.0037 19.8 0.1 1 23 733 755 733 755 0.98 9 10 2.9e-05 0.012 18.2 7.5 1 23 761 783 761 783 0.95 10 10 0.00011 0.045 16.4 0.4 1 21 789 809 789 810 0.93
Sequence Information
- Coding Sequence
- ATGGAGAACCATCTCCAGGTGCAATGGAAGCATCACCAAGAGGGAATGCTCAAGTTCTTGGAGGAACTTCGAGCCAGCGAAACATTTGTCGACGTTACTCTGTGTTGCGAAGGTCAGAAGTTCAAAGCCCACAGAGTAGTACTTTCTGCATGCAGCCCATACCTGCagCAAGTTCTCGTGGAAAACCCGGCAGATCACGCAACCATAATACTCCACGAGATAGGCGCGGAGGAGATGCGTTGCCTCCTCCGTTTCATGTACTGCGGATCTGCCAATGTTCCAAGGCGCTGTTTAAGGGCTTTCTTGAGAGCTGCCCACGCCCTCAAAGTCAGCGTGCTTATGCCGGGAACTGAGCACACCATCACCGAAGAGGCTTACTACTGTCGCGGTCCACCTCCGCATCGAGACAAAGAACCTCAGGCGTCCAGTGACCCCCGGACCTTCCCAGCGGAGGCTATGCTGCCTCACGACCTCTCCACTTCCGCTGTCAAGGCGGAAGTCGATGGTGCTAGTGGTGCGAAAGAAGTGGAAAGCAGTCGTAGTCACTTTGTGGGTGAACCGTCACCAAGACCTCAGGAGCACCCGCCCACGGTGTACAGGAGCGAAAATGTTTGGGGTAGTCCTTTCAGGGAAGGGTTGATGGGTCATCAGGCCTTGTCGCAGAGACATTCTTCCACTCTGCCCAGGCCAACTCCTGTTGTGCGGTCTCCGTGGAGCCATAGAGGCCCAGTGACTCCGTGGAAACCACCCCCAATCATTGGTGCGGTACATCCACCGACGCCACCACCAACTATGGCACACATGGAGCCAATCATGTGCCAGTCTTCTACTATGGATTCGCTTGCCGTGCCCACGATGACACCAATGCAACCGGACCTCAGAAAACCATGCTGCTGTCCCTCATCGCCTTTCTGTCCTTCAccatcttcatcatcttccgCCTACTCCACCGCCTCCTCGTGGTCATCCAACGCCCCTCCCACCTCCCCATCCGCATCATCCATACCCTCACCGCGCCCCCCCGCGCTCTTACCACCGAAGACCCTGCCCACCGAGTCCCCTCACGAGGGCACCGCCGCTCTCGCCGTCCCTTGCCCCGTTCTCCGCAACCTCTCCCCCCACACCGCTCCCCTTCCCACATCCACCACACCAACCCCCACACCTCACCCTCCCTCACCACCCTCTCCCCCATCATCCCCCTCTCGATACATACTCAAACAGCGACGTCTGAGGGACTTCTACCGGTCCATGCAGACCGACCCCAGCCGCGATGACCCTAAAGGAGCGGAGGGGCAAATTTCCGACCTGAGCCACAAGAGAAGTGCCACCCCTATTCCATCCTCCGCACCAGAAGCTGCACCTTCCCCTTTGAGGCAATGGCCCACACCTTCCGAGCAGTCGGTCATTCGCCTGTCCCCCAGATCCGCCTTCCAACCCCCACAGATCATTTTGACCCCCCCGGAGGATTTTCCCGCACCCCCTTCCAATCCGGAGGAGCAGAGGAAATCTCCTCAGCCATCCGTTCCCATCCCGTTGCCGATGCAAGCCCCTTCCGTCACGACTACGGTGCAGACGAAAACCAACGGTGGAAGCGGAGGACCTCACGCTTGTGACACGTGTGGGAAGACATTTGGGAGACGGCAGTTGCTGGAGCAGCACCGGAGGACGCATACTGGAGAGAAGCCTTTTGAGTGCACGGTGTGCGGGAAGAGCTTCACCCAGAGGGGCCACTGGAGCGTGCACCAACGACTGCACGATGGATCCAGGCCGCACGTGTGCCCGGTATGCGGAAAGGCTTTCGTTTCGCGTGCTTCCCTCAAGGTTCACCACCGCACCCACACAGGCGAAAAGCCCTTTCGCTGCGAGGACTGCGGCAAACAATTCAGCCaactgagaaattttaaataccaccgcTCAGTCCACGAAGGCACCAAGGAATTCGCCTGCACCTGTCCCGAATGCGGGAAGCAGTTCAACGACAGAGGGTACCTCAGCTCCCACTTGAAAATCCACCGAAACCGAAAGGAGTACGCCTGCGAGCACTGCGAGAAGCGTTTCAACCAAAGGGTGGCGTACAACATGCACGTCCGCATCCACACTGGAGAGAAGCCCCACGCCTGCGGCGAATGCGGCAAACGCTTCGGAAGGAAGATGTTGCTCCGGCAGCACGCCCGCACCCACACTGGAGAGCGGCCATTTCGCTGCGCCGTGTGCGGCAAGGCCTTCGCAGACAGGAGCAACATGGCCCTCCACGCCAGGCTCCATTCGGGAGAAAAACCCCACGCGTGTAACCTGTGCGGGAAAGCGTTCACCAAAAAGCATCATCTGAAGACCCATATGAACTTTCACACCGGAGTCAAACCTTACGCTTGCGAGAGGTGCGGCTTGAGGTTCAGCCAGTCCAGCAACATGAGGACGCATGCTAAGAAGTGCACTGCGGAAGGGCCTCCAGCGACCCCAGCTGCAGAAGCGGTAACTGCGGTCTCCGTGGACATCGAGGTTGAACATACGGAAGCTACTCAGGATCAGGTTGAAGACAAGGTGAATGTGGAATGA
- Protein Sequence
- MENHLQVQWKHHQEGMLKFLEELRASETFVDVTLCCEGQKFKAHRVVLSACSPYLQQVLVENPADHATIILHEIGAEEMRCLLRFMYCGSANVPRRCLRAFLRAAHALKVSVLMPGTEHTITEEAYYCRGPPPHRDKEPQASSDPRTFPAEAMLPHDLSTSAVKAEVDGASGAKEVESSRSHFVGEPSPRPQEHPPTVYRSENVWGSPFREGLMGHQALSQRHSSTLPRPTPVVRSPWSHRGPVTPWKPPPIIGAVHPPTPPPTMAHMEPIMCQSSTMDSLAVPTMTPMQPDLRKPCCCPSSPFCPSPSSSSSAYSTASSWSSNAPPTSPSASSIPSPRPPALLPPKTLPTESPHEGTAALAVPCPVLRNLSPHTAPLPTSTTPTPTPHPPSPPSPPSSPSRYILKQRRLRDFYRSMQTDPSRDDPKGAEGQISDLSHKRSATPIPSSAPEAAPSPLRQWPTPSEQSVIRLSPRSAFQPPQIILTPPEDFPAPPSNPEEQRKSPQPSVPIPLPMQAPSVTTTVQTKTNGGSGGPHACDTCGKTFGRRQLLEQHRRTHTGEKPFECTVCGKSFTQRGHWSVHQRLHDGSRPHVCPVCGKAFVSRASLKVHHRTHTGEKPFRCEDCGKQFSQLRNFKYHRSVHEGTKEFACTCPECGKQFNDRGYLSSHLKIHRNRKEYACEHCEKRFNQRVAYNMHVRIHTGEKPHACGECGKRFGRKMLLRQHARTHTGERPFRCAVCGKAFADRSNMALHARLHSGEKPHACNLCGKAFTKKHHLKTHMNFHTGVKPYACERCGLRFSQSSNMRTHAKKCTAEGPPATPAAEAVTAVSVDIEVEHTEATQDQVEDKVNVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01131664; iTF_01385050; iTF_01384982;
- 90% Identity
- iTF_01385050;
- 80% Identity
- iTF_01131664;