Basic Information

Insect: Pachycephus smyrnensis
Gene Symbol: -
Assembly: GCA_030142225.1
Location: JARQST010000712.1:74316-80779[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 3.1 2.2e+02 2.8 0.1 1 23 115 140 115 140 0.91

2 19 0.074 5.4 7.8 5.6 1 23 147 170 147 170 0.97

3 19 0.029 2.1 9.1 0.6 2 23 186 207 185 208 0.95

4 19 6.6 4.8e+02 1.7 3.7 1 23 214 236 214 236 0.97

5 19 0.042 3 8.6 0.5 2 23 242 263 241 263 0.97

6 19 1.8 1.3e+02 3.5 1.4 6 23 517 534 515 535 0.85

7 19 0.0015 0.11 13.2 4.9 2 23 546 568 545 568 0.96

8 19 2.7 2e+02 2.9 1.0 1 23 632 654 632 654 0.82

9 19 0.26 19 6.1 0.0 1 23 869 891 869 891 0.93

10 19 0.02 1.4 9.6 0.3 1 23 899 921 899 921 0.98

11 19 0.23 17 6.3 2.3 2 23 1017 1038 1016 1038 0.96

12 19 4.3 3.2e+02 2.3 0.3 3 23 1050 1070 1048 1070 0.91

13 19 0.0023 0.17 12.6 0.2 1 23 1147 1169 1147 1169 0.98

14 19 0.043 3.2 8.6 0.3 1 23 1244 1266 1244 1266 0.97

15 19 6.2e-05 0.0045 17.5 0.6 1 23 1272 1294 1272 1294 0.97

16 19 0.0075 0.55 11.0 2.6 1 23 1343 1365 1343 1365 0.97

17 19 0.00055 0.04 14.5 1.4 1 23 1371 1393 1371 1393 0.99

18 19 0.67 49 4.8 0.1 2 23 1489 1510 1488 1510 0.96

19 19 3.8 2.8e+02 2.5 0.1 3 23 1519 1539 1518 1539 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	3.1	2.2e+02	2.8	0.1	1	23	115	140	115	140	0.91
2	19	0.074	5.4	7.8	5.6	1	23	147	170	147	170	0.97
3	19	0.029	2.1	9.1	0.6	2	23	186	207	185	208	0.95
4	19	6.6	4.8e+02	1.7	3.7	1	23	214	236	214	236	0.97
5	19	0.042	3	8.6	0.5	2	23	242	263	241	263	0.97
6	19	1.8	1.3e+02	3.5	1.4	6	23	517	534	515	535	0.85
7	19	0.0015	0.11	13.2	4.9	2	23	546	568	545	568	0.96
8	19	2.7	2e+02	2.9	1.0	1	23	632	654	632	654	0.82
9	19	0.26	19	6.1	0.0	1	23	869	891	869	891	0.93
10	19	0.02	1.4	9.6	0.3	1	23	899	921	899	921	0.98
11	19	0.23	17	6.3	2.3	2	23	1017	1038	1016	1038	0.96
12	19	4.3	3.2e+02	2.3	0.3	3	23	1050	1070	1048	1070	0.91
13	19	0.0023	0.17	12.6	0.2	1	23	1147	1169	1147	1169	0.98
14	19	0.043	3.2	8.6	0.3	1	23	1244	1266	1244	1266	0.97
15	19	6.2e-05	0.0045	17.5	0.6	1	23	1272	1294	1272	1294	0.97
16	19	0.0075	0.55	11.0	2.6	1	23	1343	1365	1343	1365	0.97
17	19	0.00055	0.04	14.5	1.4	1	23	1371	1393	1371	1393	0.99
18	19	0.67	49	4.8	0.1	2	23	1489	1510	1488	1510	0.96
19	19	3.8	2.8e+02	2.5	0.1	3	23	1519	1539	1518	1539	0.87

Sequence Information

Coding Sequence: ATGTCAGGACGACTTCCTCGGCTGCGTGCGCTACGTCCTCGACCTCAGCAACATCTTCAGAATACACCAGCACCTACGAGGATTGAGTCTAGGGATAataaggaggaggaagaggaggttaatgacgaagaagacgagTTGTTGGttgatgaggaggaggaggatgagggagtggatgaagaagaagaggaagaggatgagatTATTGATGAACAGGAACTGGAGGAACAGGAGTCTGTGAATGATGATAGATTTAAGAGTGATGAGAGTGAGAAGAGACTTGTTATTAAAGAAGAACCTGAGGAAATTGTTACTGAGGAACCGGAGGACTCTGAAAGGAATTATGAGTGTAAAACCTGTGATCCACCTAAGGGTTTACCCAATCTGAAGGCTTATCTTGCACATCTTAAGAATGAGCATAAACAAAAGGTCAAGTGCTACGAATGTCCCCACTGTGAATTTGTATGTCAGCACGTGAAGAAATTACAAAGACACTTCCGTGTTGCTCATGAGGATCTTCAGGATAAGGTCGCAGCTGAATCCGCGGAAAGAAGTCGCTGTCCAATGTGTGCTCACATTGCAGCTAACCCCCAGGATCTCGAAACCCATCAAAGAGTCCATCACTTGAAACGACGTTTTTTCAGATGCGCCAAGTGTTCCTACGTAACACACGTTCGTGCTCGTTACACAAAACATGTGAAATATCATTCGATGCCAATGATAAAGTGCGACGCTTGCGATTTTCGTACTCCATACAAGTGGAATTTGGATCGTCACACACGCAATCATGGCGGCGGTGGAGCCTTTCAATGTAGAGCCTGTAATTTCACAGCAGACATTCGCCAAAGCTTAACAGTACACGAAACCAATCATCATGAACCTCCTGTAGGACAGACTCACCGCAAGATGAACACACCTTTTGAACGTAAACCTCGTAATAGTCCAAAACGTTATAACCAGGTGGGTGCAAGTGATTTTCGTGATGCAGCGACCGGGTCGAACAATCTGGAGACACTGAAGTCTGGTAGTCCGGCTAAGTCTTTGTCTCCAGATAAAAATCTAAGCTCACCAGAGGACAGAAGAAGTGCCATTGCCGGTGCAGAGTGCATCGCCCTCAAGTGCGAAGAGAAAGATTGCCAATTCATCACCGCCTGGGACTCGAAGATGCAGCGGCACTTGGCGGAATCTCATTCTCAGAACGCCGCGAATAAACCTAAGAAACCATTACCTATGCTAATACCACTGAGTCCCGTAAGCAACGCCAAAGCTAACAATGCTGGAACCAGTGGTCCGGGTACGACCTTACTGAAGGTTCCCCGGGTGAGAGTAAGACCGGAACTGGCTCGAATCGCACGGGATACAGAAATGGCGCGTTTATATGGAAACAAAGAAGCATCCGAGCTGAAGAAGGAGGCTGGTGCGGCAGACTCCTTTGAGAAAAAGAACGCCTCCTTCTTCGACAAGCTGAAGGAGAGACTGATGACGACTTCCGGGAACAATGGGATAGCTGAGGTGGCCGTAAGTAGCCAGAATGATTTGAAGTGTTGGTGTACCTTCGAAGCGAGTACCCTCGAGGAGCTGACCAGTCACAGACGGACTCATCACACTGCTCTCAGTGTGTCCCTTGGCACCTCGCGTTGTCCTAACTGTAGAAGACGTTGTAAGAGCTCGGCTGATCTGCAAGTGCACATGCGCCTCTGCCACCCTACGAGCAATGATTATGCAGCTACCGATAATAGCCTGGAAAACTCCACGGGTTACACGGAACTTCGCACCGCTTACCGCGGTGAATACGCGTTTCCGTTTCAAGTGGACTGGGATGCGAATTTTGGAGCGCTCAATTCTTCTGGATCCTCGGTCGAGGGTGGCTCTACGCCGAGTGGACGACGGGTATTCAAATGTCCCCACTGCCCGTTCTGGGCTTCGACGGCCAGTCGTTTTCACGTACACATTGTGGGTCACTTGAATCGGAAACCATTTGAATGTTCACTCTGCGCCTACCGCTCGAACTGGCGGTGGGATATCACAAAGCACATCAAACTTAAGGCAGCTAGGGATCCTGCGCACATGACCGCCAGGGTTCTCATGACCGATGAGACCGGTCGGCGCAACTACTCCAAGTACAACAAGTATCTCGCTCAGATAGAGCAGCAGTCAGGAGATGAGCGCATTTACGAGGAACGTACTGGTGAAGACCGTACCTCTGATGAACCACCGACTAAAGTCCTTATTATGGGTGATCCCAAGGAGTATCCGCAACCTCCAGAACTTACTCCAGCACCTGTATCACTCCTAGCATCCACAAATTCCTCGAGGGAGATCTCGACTATACCTTTGCGACCTCCTCCACCCTTGAAGGCTGCTACCCGAAGTCAGGGTCAATCACTCCTGAAAAATAATCCTGCTGCCTCTAACGCCAATGCGACTGTAACGCCGACTACAGGCATTGCTGCGTCCTCTAGTACAACTGCGGAGGAGAGTAAACGCACTTTGTGGAAGTGTAAACGATGTAACTTTCGCGATTCTAACAAGGAGACTGTGCTAATTCATGTTAAATCTCATTACGAATCTATGGATGATGTTGCTGAAACTGAAAAGAATGCCTTTGCCTGTGAGGATTGTCCATTCTCAGCTGCTGATGCCGAATCCTTGGCTCTGCATCGTGTACATCATCGACCCAATCTTGAAGCCATATTTAAATGTTATCTCTGCCCTTACTACGTTAGCACTAAagtAGAGCTCTTGGATCATGCTCGATTACATGGAGAGGAATTGGCTGTTGTTCATCAGAGAAGCGTAGAATCTGAATCACCACCTTCTAAGCGTAAATATTCTCAGAATCATCGTACAATTCTAGCGAACAACCAAACTAAAGAGGAATCATCGATGGAACAAGTTATACACATAACATCCCCAAGCACTTCCACTTCAGGTTCAGTTTCATCAAAGGGTAACGAAGCTCCACCTCTTCTCCTGGATACGCGCGCCCTTCCTGACGCACCTTTGGTATGGGTGTCACGAACAGATGGTACAATTGcaaaaatgttaaaatgtcGACACTGTCCGCACGTGTCATCACGGAGAGCCGAGGTCCGCGATCACGAGAGTATGCACATGAACTCGCCCAACCAGGGTTCTCTCATAGCTTGTCCAAACTGCAGCTTCGCTTGCTCACGAAGAGAAGTTATGGATTCCCACGCAGAGATGCATTCGGGCGCCCTGGGGACTGTACACTGTCTCGTTGACGAGGGTCGGACCGATGCCCAACAGTTGAACGACCTCTCCACCCTCCTTGGACTTCCTCAACCCATGGCCGTGGCTTCAGAGCCTGACCTGAGGGACTCCAGGCTGGTTCACTGCTGTAGCAAGTGTCCTGCGCGTTTCCTGTGCGAGAAGGAGCTCAGGATTCACCTGCGTTATCATTGTACCGAGCTAGCCTACTCGTGCCAGTGGTGCTCGTACGCTGCTCGACAACCAGCTCATCTTATGGCACATCAAAAAGCACATTCGCCCGAGTACCAGGATCGCACTCGTTACCTACTCTCCCTGTATGGTCACTCGCAGAGATATCCTCCTCCTACGACGGCGTGCGTCGAGGCTAACGCTCAGGATTCCGCAGATGGTAACACTGCTAACGTCGCTTGGATCGTCGTCGAGGTGGCTGCAGGACGCAGTAATGTCCTGACTAATCACCTCACGACTAGCAGTCAGGAAACTGGAAACCAAGTGTTTACCTGTGCCAAGTGTCCGGCGCGATACTTCAAACTCGACGCCCTAGAGTATCATATGACTCTTCATGGTACGAATAATAGATTCAAGTGCACCGAGTGTGATTACTCTTCGAAGACGGCGCAGAATCTGGTGAAGCACCAGGTTGTTCATCGTCGGCACGCTGAAGCTAACGAGAATGTTACGTCCTCGAGAGTGCTACCACCACCTGATCCACAGTTTGGCATCCTTATGCGTGGGAATCCTAACTTTGTGTATCCAGGATACCTCAGGAATGGTCGACTTCGCGAGAAACGGTACAAGTGTCACAAATGTCCATCGGCTTTCGAAAAACGTGAACAGTATAGGATTCACTTGACGTTACATGGTGCAAAACAACGATATCGTTGCGACACTTGTGATTATTCTGTCAAATATTATGCGAATTATGCTCAACACTTGAGGAAGCACCAGGCCAATGCCCAGGCAcaggcgtcccgacgacgGTACGAGGACGACGCCATAACTATTGACAGTGGAATCCAATCTGATAgtgctatatctatatctcgCTCTGGGAAATCCTTAACCAAGTCCTCAGCAGGTTCCTCCGCATCCTCTGGCAACATCCTGGCTAGTGGTAGTGCAGCGAACTCTGCTGTACTGCAAGTTTCCAACCAGGACAAGCAGTCACTGATGCTTTTACAAAAGAAAGGTCTTCTGGTTGCACCTAGTGAAGCAGAAGCAGAGACTATTCGCTGTCAAGACTGTCCTTTTGGTACTCCTGATAAGGATGTCATGGATGCTCATAAACGTCGCCATGGTATTGAGAGGATGACACCTCCTTGTCCTCACTGCGATTATGTACCTCGCAAGGATGAGAATGTAGGTGATCATATTCGTCTTCATTTCACCAGGCTCTACAAGCCAGACTCTTACCTCATTGCTGAACTGCTCACCCTGACAATGCGTCGTATCCCTGCAAACGGCAAAGAGGATGCTAAGGAAAATGAATTGCTGTTCAAGGAATGTGTCGATGGGAGATTTCTACCAATAGTTGACCCGACTACGTCCTCCAGATCTTTATCTCCCAATGGAAACAGTGTACAAGAGAAAGTCATAGTGGATCCTAACACAGGTGAAGCCAAGCAGCATCTCActgtataa
Protein Sequence: MSGRLPRLRALRPRPQQHLQNTPAPTRIESRDNKEEEEEVNDEEDELLVDEEEEDEGVDEEEEEEDEIIDEQELEEQESVNDDRFKSDESEKRLVIKEEPEEIVTEEPEDSERNYECKTCDPPKGLPNLKAYLAHLKNEHKQKVKCYECPHCEFVCQHVKKLQRHFRVAHEDLQDKVAAESAERSRCPMCAHIAANPQDLETHQRVHHLKRRFFRCAKCSYVTHVRARYTKHVKYHSMPMIKCDACDFRTPYKWNLDRHTRNHGGGGAFQCRACNFTADIRQSLTVHETNHHEPPVGQTHRKMNTPFERKPRNSPKRYNQVGASDFRDAATGSNNLETLKSGSPAKSLSPDKNLSSPEDRRSAIAGAECIALKCEEKDCQFITAWDSKMQRHLAESHSQNAANKPKKPLPMLIPLSPVSNAKANNAGTSGPGTTLLKVPRVRVRPELARIARDTEMARLYGNKEASELKKEAGAADSFEKKNASFFDKLKERLMTTSGNNGIAEVAVSSQNDLKCWCTFEASTLEELTSHRRTHHTALSVSLGTSRCPNCRRRCKSSADLQVHMRLCHPTSNDYAATDNSLENSTGYTELRTAYRGEYAFPFQVDWDANFGALNSSGSSVEGGSTPSGRRVFKCPHCPFWASTASRFHVHIVGHLNRKPFECSLCAYRSNWRWDITKHIKLKAARDPAHMTARVLMTDETGRRNYSKYNKYLAQIEQQSGDERIYEERTGEDRTSDEPPTKVLIMGDPKEYPQPPELTPAPVSLLASTNSSREISTIPLRPPPPLKAATRSQGQSLLKNNPAASNANATVTPTTGIAASSSTTAEESKRTLWKCKRCNFRDSNKETVLIHVKSHYESMDDVAETEKNAFACEDCPFSAADAESLALHRVHHRPNLEAIFKCYLCPYYVSTKVELLDHARLHGEELAVVHQRSVESESPPSKRKYSQNHRTILANNQTKEESSMEQVIHITSPSTSTSGSVSSKGNEAPPLLLDTRALPDAPLVWVSRTDGTIAKMLKCRHCPHVSSRRAEVRDHESMHMNSPNQGSLIACPNCSFACSRREVMDSHAEMHSGALGTVHCLVDEGRTDAQQLNDLSTLLGLPQPMAVASEPDLRDSRLVHCCSKCPARFLCEKELRIHLRYHCTELAYSCQWCSYAARQPAHLMAHQKAHSPEYQDRTRYLLSLYGHSQRYPPPTTACVEANAQDSADGNTANVAWIVVEVAAGRSNVLTNHLTTSSQETGNQVFTCAKCPARYFKLDALEYHMTLHGTNNRFKCTECDYSSKTAQNLVKHQVVHRRHAEANENVTSSRVLPPPDPQFGILMRGNPNFVYPGYLRNGRLREKRYKCHKCPSAFEKREQYRIHLTLHGAKQRYRCDTCDYSVKYYANYAQHLRKHQANAQAQASRRRYEDDAITIDSGIQSDSAISISRSGKSLTKSSAGSSASSGNILASGSAANSAVLQVSNQDKQSLMLLQKKGLLVAPSEAEAETIRCQDCPFGTPDKDVMDAHKRRHGIERMTPPCPHCDYVPRKDENVGDHIRLHFTRLYKPDSYLIAELLTLTMRRIPANGKEDAKENELLFKECVDGRFLPIVDPTTSSRSLSPNGNSVQEKVIVDPNTGEAKQHLTV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01475809;
90% Identity: iTF_01475809;
80% Identity: -