Psmy006306.1
Basic Information
- Insect
- Pachycephus smyrnensis
- Gene Symbol
- -
- Assembly
- GCA_030142225.1
- Location
- JARQST010000338.1:88808-90187[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0002 0.014 16.0 3.3 2 23 184 205 183 205 0.97 2 9 0.00087 0.063 13.9 0.6 1 23 207 230 207 230 0.96 3 9 0.0028 0.2 12.3 1.1 1 23 235 258 235 258 0.95 4 9 0.00019 0.014 16.0 2.2 1 23 264 287 264 287 0.95 5 9 0.00072 0.053 14.2 2.0 2 23 294 316 293 316 0.95 6 9 0.0023 0.17 12.6 0.5 1 23 321 343 321 343 0.96 7 9 0.00043 0.031 14.9 0.5 3 23 351 370 350 370 0.98 8 9 3.4e-06 0.00025 21.5 0.1 1 23 376 398 376 398 0.97 9 9 0.00033 0.024 15.2 0.4 1 23 404 426 404 426 0.97
Sequence Information
- Coding Sequence
- ATGTCTAACGTTTCTCAAATTTTCTGTTGTAGGAACTTCATCTCCGATCCGCTAAGCGTCTCGGGGACGAGGACGCACTCGGACGAAAAGAAACCGGTGGTCAGGATTGAGTGCACACCAGAATACATGATATGGCCGAAGAAGAAGGCTGTGGCAGCGGCGGCAGCGGAAGAGCGGCTCCAAAGCTTTCCATATCATAATCAGGGTTACTCTACAGTGAGCCTCGATGTTCAAGGGGACGTAGCGGATGGGAGTGCGGTGGATAAGGACGGGGACGGGGATGATGACGAAAACGGGAACGGGAACGAGAACGAAGAGCAGGATGGcgatgaggatgatgatgatgacgacgacgacgatgacgacgacgacgacgacgacgacgacaatgaggacgaggacgattacgatgatgatgatgatgatgatgccgATGAAGATGACGATGGTCATCGAAGTAAGAAGgtaaagaaagagacaaaggtAAGGCATCAGGGAAGACGGAAGACCGAGGAGCGTGAAGTGTCGCGAGTTACGCGCAGCAGTGTCGAGTGCGATCATTGCAGACGCAAGTTTTTTAAGAAGAGTAACTTGGCCGAGCACCTCAAGCAGCACAAGTACAAGTGTTTGGAGTGTGCAAAAACCTTTAGTCTGAAACGATATCTGAATGGTCACGTCGAGAAGATCCACAGGCCACATGTGTTCGAGTGCAGCGTCTGCGAGTACAAGAGCAACAACAAAGGAACTCTCAAGAATCACTTTATTCGGTTGCACACGAGCAGCTTTAATTTTGCGTGCGACACGTGTGGCAAGCAGTTCAAGATTAAAAAGGCCCTTAATCACCACGTCAAGCAAAATCACAGTGGAAACCCGCCAATAGTCTGCGACGTTTGCGGTCACTTCAGCAAGAACCTTCACGCCCTGAAGGCCCACATGAAGTATCGGCACTACAAGCCTGAGTTCGAGTGTAGGATCTGTCGCAGGGGTATGACCACCAAGGAGAACCTCGAGCAGCATCTCACCTGGCATGAAACTCGCGAAAAGGTTCTCTGTCCCACCTGCGGTAAGAGATTTCGTGGACGTGATCTCGATTCGCACATGAGAGTGCACACAGGTGTGAAGCCCTTCCCTTGTCCTGTCTGTGGCAAGTCTTTCAGGAGGCAGACGGCCCAGGAACAGCACGTTCTCATCCACACGGGCAAGAGGCCCTACGTCTGCGACATCTGCGGCCAGGCCTTTGCGCAGAAGCCCGGACTCATCTGTCATCGGAAGCGTCATCCTGGACCACTGCCACCGCTTCCAGTCGTATCCATTAAGAATATCGTAACCGAATTTACCAGAGAGTTCGCCATGAAGAATCAAACGATAATCATCGAGTAA
- Protein Sequence
- MSNVSQIFCCRNFISDPLSVSGTRTHSDEKKPVVRIECTPEYMIWPKKKAVAAAAAEERLQSFPYHNQGYSTVSLDVQGDVADGSAVDKDGDGDDDENGNGNENEEQDGDEDDDDDDDDDDDDDDDDDDNEDEDDYDDDDDDDADEDDDGHRSKKVKKETKVRHQGRRKTEEREVSRVTRSSVECDHCRRKFFKKSNLAEHLKQHKYKCLECAKTFSLKRYLNGHVEKIHRPHVFECSVCEYKSNNKGTLKNHFIRLHTSSFNFACDTCGKQFKIKKALNHHVKQNHSGNPPIVCDVCGHFSKNLHALKAHMKYRHYKPEFECRICRRGMTTKENLEQHLTWHETREKVLCPTCGKRFRGRDLDSHMRVHTGVKPFPCPVCGKSFRRQTAQEQHVLIHTGKRPYVCDICGQAFAQKPGLICHRKRHPGPLPPLPVVSIKNIVTEFTREFAMKNQTIIIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00294727;
- 90% Identity
- -
- 80% Identity
- -