Psmy000719.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pachycephus smyrnensis
Gene Symbol
-
Assembly
GCA_030142225.1
Location
JARQST010000041.1:204203-207255[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.2 15 6.5 0.4 3 21 258 276 258 277 0.88
2 13 0.0079 0.58 10.9 0.2 1 20 283 302 283 306 0.90
3 13 0.00014 0.0099 16.5 1.8 2 23 319 341 318 341 0.95
4 13 0.0025 0.18 12.5 0.3 3 23 354 374 354 374 0.98
5 13 1.1e-07 7.9e-06 26.2 1.5 2 23 412 433 411 433 0.97
6 13 0.0029 0.21 12.3 0.1 1 23 438 461 438 461 0.92
7 13 0.25 19 6.2 1.8 2 23 534 555 534 555 0.97
8 13 0.00023 0.017 15.7 1.5 1 23 564 586 564 586 0.95
9 13 0.0011 0.082 13.6 2.8 1 23 594 616 594 616 0.97
10 13 0.011 0.81 10.4 3.8 1 20 622 641 622 642 0.95
11 13 6.9e-05 0.0051 17.4 2.4 1 23 668 690 668 690 0.99
12 13 0.2 14 6.5 0.0 1 23 754 777 754 777 0.97
13 13 7.7e-07 5.6e-05 23.5 5.9 1 23 782 805 782 805 0.98

Sequence Information

Coding Sequence
ATGGCTCTAGCAAACAACTGGGAGAATAGTTGCAGACTTTGCTCTGAGCAGAAAAGTGAAATGTTACCTATATTTGGAGAAGAGGGTCTTCAGCGTAAGGTTGCTCAGAAGTTACGAGCATGCCTACCAGTAATGGTGTACAAAACCGATCCACTGCCTAAACAAATTTGTCAGTTTTGTGCAGCGAGATTAGACGATGCATATGAATTTAGAGAGTATTGCTTGAACGTTTATAAGAGCATGCATATAAAGCTACTTGCACTTAGGGAGTCTGAATcggtgcaaatatttttggatgCCATGAGGAACTCTCCAGATCCTTGTCAGGTACAACTGTGCAAAGAGAAATCTAGAGCTCCGCCACCATTGGTCCCTTTACCAGCAACACTGCCAATTGAAAGTCCTTCGACCCCAGTCAATTTTATAGAAACAGTTCAATCGAATAGTTATATCGAACCTCTGCCAGAATTACCATGTGAGgtacaaataaaagaagaacCCACAGATGCAATCCTCAAAGATGATATAGCAGCAGAGGATTCGCCTGATTTTGAGAGAAAATCGAGAAGTATATTTGACGAAACAGGATCGATGGAagataacaatattatactgCTTGAGGATCGTGTAAATGATCCTCGAAATGCAGAATCAGAGACCAAAAGGGAAGAGAAGCGAACTAGCATATTAGAACAAGTGCTAACAGGTAGTTTAACATTGAACGATCGTAAAGAATTGAAACCAAGAGTTGGTCTTAGTTCCCAATGGTGGTGTTCACcctgtaataattattatagAACAAAGGAGAGCTTAATGAAACACATGAATCTAAACTGTCCTCGTAAATATACGTGCAAAACGTGTAACTCCGTCTTCGAAACAGTCGAAGATCTTGCGAAACATGAGGGTAATGATCACTTAAAGATCATTCTTGACTTCGATAAGTCCCTCAAATCATGTAATCAGTGCGACCGTGAATTCGTTAGCTGGGAAATGTTGCGACACCACAGACTACGTGATCACCAACCCACCACGTCGGTGCTTGGCTCCAATACCTGGTGTCCACTTTGTAATAGATTTTTTCCAAATGCGGAATCGTACGAAACCCACAAGATGCTTCATCAGCCAGAATCTCTTTCGCAGCAATCAATACTACCAACACTTTCAGTTCCTCCAGAAGAGCTTCAGCGAGAGCTTAAAAGAGATCATTTTGCTGAATGTGTCAAATCACTAACTTGTCCCACCTGTGGAAAGGTATGTACGCAGCAGAGCGCGCTATCTAATCACATGCGGACTCACGAgccaaaaaaatacaagtgTGAAATCTGTGGCCGTTCTTTTGGACTTTTTATACGGTTAGCAGCACATAGACTCAGTGAGCATAATCAACAGCCAGTAATGACTCCTGTGATGGCTAGTGTAGAGCAGGAAGAAGCTCTGAATGCTGAAAGAGAAGCTAGGGAAGCTAGAGAAGCCAGAACTCGTGGAAGAACCAGAACTTATTCAGAGATCGTGGAAGACAATGACGTTCCTATGGACAGTCAACCATCTGCAAAACGTAACAGTCAATTGAACAGCAGCGGATCAAAGAACGTAGCACGCTGTGGTATCTGTTCGCAATGGTTCAGCGATCACACAACGATGTTGACCCACTTGCAGACACACTCGGATAGTTACGTGTACAAGAGTTTCAGTTGTCGTGTGTGCAAAAAGACTTTTAAGGAAAAATGGCAGCTTCTCAGGCACGAGGTGTCTCACAAACGTGGAAATTTAACGGTCTATTCATGTTCCACGTGCAATAAAACCTTCACGGATAAGGCACAGCACAAAGAACACGTAGCTACGCACGTTGTTGATAAGACCTATCACTGTCCGAAGTGCAATAAGATTTTCTTCAAAGAATTCTCATTAATGGCCCATCAGTGTCCTGGGAAGCCATTGTTCGGTAAGAGATCCGCTTCGCAGAAATCTCAGTCGCAGTTCAGTACCACGAAGAACAAATATAAGTGTTCCAAGTGCAGTGCCACTTTCACGAATTCACAATCCAGGAATTCTCATATGAGAGTGCATACAGAGGCTCACGCTATGATGCAAGTGAAGAAGcaggaattaaaaaaggaaCTAGGAATGGAATCGATGCCAAAACTTTCTCCCGAATCATCCCCTGGTACATCAATGCCACTTGAACCTAAAGTAGAAATTAAGGAAGAAAGTACACCAACGCCTGTCAAAAGAACGCTCATTAGAACACCTGGAGGATATCGTTGTGGCGTCTGTCAGTCGCCGTTTGTTCTACGCGAATTAGCTGTCGCTCATTTGAGATCAGCTCATCCTGTGATGCCGTATCAATGTCCATATTGTAAAAAGCGTTTCACAACACAGTATACATTCACGCATCATATTAAGACGGATCATCCAGACGAGTCTGAGAAGTAA
Protein Sequence
MALANNWENSCRLCSEQKSEMLPIFGEEGLQRKVAQKLRACLPVMVYKTDPLPKQICQFCAARLDDAYEFREYCLNVYKSMHIKLLALRESESVQIFLDAMRNSPDPCQVQLCKEKSRAPPPLVPLPATLPIESPSTPVNFIETVQSNSYIEPLPELPCEVQIKEEPTDAILKDDIAAEDSPDFERKSRSIFDETGSMEDNNIILLEDRVNDPRNAESETKREEKRTSILEQVLTGSLTLNDRKELKPRVGLSSQWWCSPCNNYYRTKESLMKHMNLNCPRKYTCKTCNSVFETVEDLAKHEGNDHLKIILDFDKSLKSCNQCDREFVSWEMLRHHRLRDHQPTTSVLGSNTWCPLCNRFFPNAESYETHKMLHQPESLSQQSILPTLSVPPEELQRELKRDHFAECVKSLTCPTCGKVCTQQSALSNHMRTHEPKKYKCEICGRSFGLFIRLAAHRLSEHNQQPVMTPVMASVEQEEALNAEREAREAREARTRGRTRTYSEIVEDNDVPMDSQPSAKRNSQLNSSGSKNVARCGICSQWFSDHTTMLTHLQTHSDSYVYKSFSCRVCKKTFKEKWQLLRHEVSHKRGNLTVYSCSTCNKTFTDKAQHKEHVATHVVDKTYHCPKCNKIFFKEFSLMAHQCPGKPLFGKRSASQKSQSQFSTTKNKYKCSKCSATFTNSQSRNSHMRVHTEAHAMMQVKKQELKKELGMESMPKLSPESSPGTSMPLEPKVEIKEESTPTPVKRTLIRTPGGYRCGVCQSPFVLRELAVAHLRSAHPVMPYQCPYCKKRFTTQYTFTHHIKTDHPDESEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00255299;
90% Identity
iTF_00255299;
80% Identity
-