Basic Information

Insect: Pachycephus smyrnensis
Gene Symbol: ham
Assembly: GCA_030142225.1
Location: JARQST010000135.1:326164-350411[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.72 53 4.7 0.3 2 23 307 329 306 329 0.77

2 9 8.1 5.9e+02 1.4 0.1 3 23 338 359 336 359 0.89

3 9 2.8e-09 2e-07 31.2 0.2 1 23 365 388 365 388 0.98

4 9 6e-06 0.00044 20.7 2.6 1 23 394 416 394 416 0.95

5 9 1.2e-05 0.00086 19.8 4.4 1 23 422 444 422 444 0.99

6 9 0.022 1.6 9.5 0.5 2 21 452 471 451 472 0.94

7 9 8.6e-09 6.3e-07 29.7 1.2 1 23 808 830 808 830 0.99

8 9 4.5e-07 3.3e-05 24.3 1.7 1 23 836 859 836 859 0.97

9 9 1.3e-05 0.00093 19.7 3.4 1 23 865 887 865 887 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.72	53	4.7	0.3	2	23	307	329	306	329	0.77
2	9	8.1	5.9e+02	1.4	0.1	3	23	338	359	336	359	0.89
3	9	2.8e-09	2e-07	31.2	0.2	1	23	365	388	365	388	0.98
4	9	6e-06	0.00044	20.7	2.6	1	23	394	416	394	416	0.95
5	9	1.2e-05	0.00086	19.8	4.4	1	23	422	444	422	444	0.99
6	9	0.022	1.6	9.5	0.5	2	21	452	471	451	472	0.94
7	9	8.6e-09	6.3e-07	29.7	1.2	1	23	808	830	808	830	0.99
8	9	4.5e-07	3.3e-05	24.3	1.7	1	23	836	859	836	859	0.97
9	9	1.3e-05	0.00093	19.7	3.4	1	23	865	887	865	887	0.99

Sequence Information

Coding Sequence: ATGAACGGTTTAGATCTTTCGCGATCAATGGTCGATTACAAGATGAGTGgaAGCAGCGACGAGGGCGAGGCGGCTGGGGGTGCCGGGGGTGGTGGTCCGCCGGAAAGCGCAGAGATGGACGAGAATTCGGCAAGGGGTTGCAGCAATAATCCTATTTATAGAGATTTGAAACCCTTGCACGCGACGAGTGCTCACGACGTCCCGCAGGAATATCCTCAGGCCAGGCCAGCCTATCAGAGGAGAGAATATTCACCGGCAATGGAAAGGACGGTGACCTACGAGAAGGAGCAGCCAGCAACCCCTAAAGAGGACGATAGGAAACCATGGGATTTTAGTGAGAAATTGGAGCAAAAGGATTTCGGTCGACCTGCTGATACCTATAGGGGTGAATATCAGAAAACGATAAAACAGGAACCAAGGGACTCGAAGGAACAATTGAGCAGAGATTGGGTGTCGCCGGTACCGGAAGTCGAGGTCGGTGGTTCTGCACCAGGAGGTCCTCAAGTGCGGGCACGAAAGGATATTCCACGCGGAGCACGATTTGGACCGTTTTTAGGAAAATGGGCCGACGAGCCGTTCAACCCTCGTTACGCGTGGGAGGTATGCATCGCCGGAAATGGCGTTAGGGGTTGGTTGGACGCATCGCATGAAGCGACAAATTGGCTCAAGTACGTTCGCAGCACCGCAAGTCCACACGCTGTTAATATGCGACACGTTCTCATTGGCGGACAGATGGTCTACGAAGCGATACGCGACATCGCCAGCGGTGAGGAATTGCTTTTAGGTTTGAGGGAGCCTCTTCAGCTGAAGGATATGCTTGGTGAAAACACGACGGAGGATAGAAGCGACAGAGAAACAGCTTCCCAGCACAGCGGCACCGTAGACGAGGATcgcgaggacgaggaagagggtGAAATCAGGTGTACCGTCTGCGACAAACCCTTCCTGGACATAGAGCTACTCGACGGTCATTTAGTGACGTGTCATCGATATCCGGCCGAGCAGCATCTTTGCGAGAGCTGTCCCAGGGGATACGCCTGGCGGCCATTGCTTGTACGTCATCGTGCGATAGTCCACGGGGATCTGCGGAAGTATCCATGTGAAAATTGTCCCAAGGTCTTCACGGATCCGTCGAATCTTCAGCGACACATAAGGACGAACCACGTCGGCGCCAGGAGTCACGCGTGCACCGAGTGCGGCAAGACGTTCGCCACGAGTTCCGGTCTCAAGCAGCATACGCATATACACAGTAGCGTGAAACCATTTCAGTGTGAAGTATGCTCTAAGGCGTATACGCAATTTTCGAATCTATGCAGGCACAAGCGCATGCACGCGACTTGTCGTCTGCAGATTGAGTGTGTTAAATGCCGACAGTCGTTTAATACCGTTACGTCACTGGCGAAGCATAAAAGATTCTGTGATTCGACGGCACCCACGGGACCACCCGGTACCATGACCCAGCTACCGACCTCTGCACCGAATCCGTTTCTGGTTTATCCGCGACCACCGGTCACGCTACCCGGTGCACTGCCATTTTATCCACCGAGTCTCATGGGTCCCTATCCTGGGATATTTCCGAACGCACCGAACTTCCTGAACTCGTCCCTGCTGTTTCCGCCTAAGGTCGAGCAGACTGAGAAGAGATACGACAGTCCTAAGAAGGAACGCTTCACGCCACCTAGGATACTACCACAGCATAGTAAGGTGTCGCCTAGCACGGGGGAGGAAGCCACCTCTAACTTCCGGCCGTCACCAGCCAGACCACCTGTACAACCTACGCCAGAGAGCGACGAGGATCCTGTTAAGAGGAAGGAGACGAGTAAGTCGACGGACAAGAGGATGGAGACGGAAGCGTCGGAGGAGTCGACGGATCAACCCCTGGATCTGAGGGTACAAACGAAGCGGAGAGATCAGCCGGAAAGTGTGTTGGAGAGTGCGGCGTCTTCGCCGGCGCCAGTAGTCGAAGAAGCGCCACCACCACCGGAACGGGCAAAACCGGAAGAGGAGGAGATGGAAGTGGAGGTGAAGGAAGTAGTCCCTAGTTCACCCCTAAGAAGTGTGGCTGATCATCAACCTACAAACACTCCACCTCACATGGCCTATCCACGACCTATACACCCCATGTTCCTAGAAGCAATGTACCGATCGCCTGCCGGAACCTTCCCGGGTTTCCCCGGTGGTCCACCACCTCCAGGCGGTGGTCCAGAGTCTCGTCTTCTACCACCATTACCACCCTTCGGACCGCCACGTGGACTTCCTTTTTTAGGGACACTCATGAACGGGCTGAGCGGCGCTAGACCAGGCTTCGATCTCCTGGCGAGGCCGCCGCTCAGCGCGTTCCCTGGGGTCAAGCCGTTCCAGGATGTCATCTCccaccatcatcaccatcatcatcacgcCCACGGGAAGATGAAGGATCGTTACTCCTGCAAGTTTTGCGGCAAGGTCTTTCCACGTTCGGCCAACCTGACCCGGCATCTGAGGACTCACACCGGGGAACAACCCTACAAGTGCAAGTACTGCGAAAGGTCCTTCAGCATCTCCTCCAATCTTCAGCGTCACGTCAGGAACATCCACGACAAGCAACGTCCTTTCAAGTGTCCTCTGTGCGAACGCTGCTTTGGCCAGCAGACGAATCTCGACCGTCACCTGAAGAAGCACGAAGCCGACGACGGCAGTGGCGTCGTCTCCGTCGCTGATTCGCCAGGTAGCAGTAACGAGAATGAGCGCGAGGATACCTACTTTGATGAGATCAGATCATTCATGGGGAAGGTCACCTATGGTGGTGAAGGTTATGGTCTACCGCATCCAGCCTATCTACCAGGTAGACTTCACGACCTTCACGAGGCTAAGACGGTGGGCGAAtacgacgaggatgaggatagCGAAGAGGGTGTCTCCCCCATAGAGGAAACCGACGGTATGTCTCCAATGGAGACCAAGGAATCCCCACCGCCCCAGTACGAGCTCAAATTGAGGGACAAGCAGGAGTTGCTCAATAATAACACGGCTGAGCCCGTTATAGAGATTTCTACATAG
Protein Sequence: MNGLDLSRSMVDYKMSGSSDEGEAAGGAGGGGPPESAEMDENSARGCSNNPIYRDLKPLHATSAHDVPQEYPQARPAYQRREYSPAMERTVTYEKEQPATPKEDDRKPWDFSEKLEQKDFGRPADTYRGEYQKTIKQEPRDSKEQLSRDWVSPVPEVEVGGSAPGGPQVRARKDIPRGARFGPFLGKWADEPFNPRYAWEVCIAGNGVRGWLDASHEATNWLKYVRSTASPHAVNMRHVLIGGQMVYEAIRDIASGEELLLGLREPLQLKDMLGENTTEDRSDRETASQHSGTVDEDREDEEEGEIRCTVCDKPFLDIELLDGHLVTCHRYPAEQHLCESCPRGYAWRPLLVRHRAIVHGDLRKYPCENCPKVFTDPSNLQRHIRTNHVGARSHACTECGKTFATSSGLKQHTHIHSSVKPFQCEVCSKAYTQFSNLCRHKRMHATCRLQIECVKCRQSFNTVTSLAKHKRFCDSTAPTGPPGTMTQLPTSAPNPFLVYPRPPVTLPGALPFYPPSLMGPYPGIFPNAPNFLNSSLLFPPKVEQTEKRYDSPKKERFTPPRILPQHSKVSPSTGEEATSNFRPSPARPPVQPTPESDEDPVKRKETSKSTDKRMETEASEESTDQPLDLRVQTKRRDQPESVLESAASSPAPVVEEAPPPPERAKPEEEEMEVEVKEVVPSSPLRSVADHQPTNTPPHMAYPRPIHPMFLEAMYRSPAGTFPGFPGGPPPPGGGPESRLLPPLPPFGPPRGLPFLGTLMNGLSGARPGFDLLARPPLSAFPGVKPFQDVISHHHHHHHHAHGKMKDRYSCKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHDKQRPFKCPLCERCFGQQTNLDRHLKKHEADDGSGVVSVADSPGSSNENEREDTYFDEIRSFMGKVTYGGEGYGLPHPAYLPGRLHDLHEAKTVGEYDEDEDSEEGVSPIEETDGMSPMETKESPPPQYELKLRDKQELLNNNTAEPVIEIST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01473381;
90% Identity: iTF_01473381;
80% Identity: -