Basic Information

Insect: Pachycephus smyrnensis
Gene Symbol: -
Assembly: GCA_030142225.1
Location: JARQST010000689.1:904648-908750[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.13 9.3 7.1 1.2 1 23 355 377 355 377 0.97

2 20 1 74 4.3 0.4 1 19 384 402 384 402 0.97

3 20 0.013 0.92 10.3 0.9 1 23 426 448 426 448 0.98

4 20 0.024 1.8 9.4 0.3 1 20 502 521 502 523 0.94

5 20 0.038 2.7 8.8 7.1 1 23 535 558 535 558 0.98

6 20 0.18 13 6.7 2.8 1 23 563 585 563 585 0.97

7 20 0.00019 0.014 16.0 0.5 1 23 621 643 621 643 0.98

8 20 0.00061 0.044 14.4 0.1 1 23 649 671 649 671 0.98

9 20 6.7e-07 4.9e-05 23.7 0.6 1 23 709 732 709 732 0.97

10 20 0.00087 0.064 13.9 0.4 1 23 738 761 738 761 0.95

11 20 0.12 8.7 7.2 0.2 1 23 768 791 768 791 0.92

12 20 0.00077 0.057 14.1 0.1 2 23 800 821 799 821 0.91

13 20 0.055 4 8.3 1.3 1 23 877 900 877 900 0.94

14 20 0.0013 0.092 13.4 1.2 2 23 916 937 915 937 0.96

15 20 0.00014 0.0099 16.5 1.7 1 23 951 973 951 973 0.98

16 20 0.0011 0.083 13.6 0.3 1 19 995 1013 995 1015 0.96

17 20 0.0014 0.1 13.2 0.4 2 23 1070 1092 1069 1092 0.95

18 20 0.12 8.9 7.2 0.4 3 23 1119 1140 1118 1140 0.89

19 20 0.076 5.5 7.8 1.3 3 23 1174 1195 1173 1195 0.92

20 20 0.015 1.1 10.0 0.6 3 23 1226 1247 1224 1247 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.13	9.3	7.1	1.2	1	23	355	377	355	377	0.97
2	20	1	74	4.3	0.4	1	19	384	402	384	402	0.97
3	20	0.013	0.92	10.3	0.9	1	23	426	448	426	448	0.98
4	20	0.024	1.8	9.4	0.3	1	20	502	521	502	523	0.94
5	20	0.038	2.7	8.8	7.1	1	23	535	558	535	558	0.98
6	20	0.18	13	6.7	2.8	1	23	563	585	563	585	0.97
7	20	0.00019	0.014	16.0	0.5	1	23	621	643	621	643	0.98
8	20	0.00061	0.044	14.4	0.1	1	23	649	671	649	671	0.98
9	20	6.7e-07	4.9e-05	23.7	0.6	1	23	709	732	709	732	0.97
10	20	0.00087	0.064	13.9	0.4	1	23	738	761	738	761	0.95
11	20	0.12	8.7	7.2	0.2	1	23	768	791	768	791	0.92
12	20	0.00077	0.057	14.1	0.1	2	23	800	821	799	821	0.91
13	20	0.055	4	8.3	1.3	1	23	877	900	877	900	0.94
14	20	0.0013	0.092	13.4	1.2	2	23	916	937	915	937	0.96
15	20	0.00014	0.0099	16.5	1.7	1	23	951	973	951	973	0.98
16	20	0.0011	0.083	13.6	0.3	1	19	995	1013	995	1015	0.96
17	20	0.0014	0.1	13.2	0.4	2	23	1070	1092	1069	1092	0.95
18	20	0.12	8.9	7.2	0.4	3	23	1119	1140	1118	1140	0.89
19	20	0.076	5.5	7.8	1.3	3	23	1174	1195	1173	1195	0.92
20	20	0.015	1.1	10.0	0.6	3	23	1226	1247	1224	1247	0.94

Sequence Information

Coding Sequence: ATGGACGAGGTGGACCAGTTGCTGAATGTCGAGGATTTGTGCAGATTATGCCTCTCGGCCGATCAGCCAAAGTCCTCTATATTTCATGGGGAAGACTCTTCTGTCTCGCTTGCTAGGAAAATAGAGGCATGCCTGTCGATCGAGATTTCTCAAAGCGACAAGCTCTCTACCACAATATGCACCGAGTGCGTGACAAAGGTCAACCAGTGGCATGCTTACAAGGAATCCTGTCTACGGTCTCAGGATAAGTTACGGGAGTGGCTGGCAAGACAGACCTCTTCAGAGTTTTTGGGAACTGCTGTAAAAGAAGAGCCTATGGAATTGGACTATAATGTGGAGGATGATGAGATCTTGCCCGAATGCATTGAACCCAGTGATAAAGATTCCAACTACCCACGAATATCATGCATCAACGTTCAGGAACATTCTaaggaaaaagagagtgaGCATATCAACGAAGAGTCACAGGCTACGGGGTTGCTCAAAAATGTAGTAAATTTAGAAGTTTCGGGTAGCCCCTCCAAAGAACCAGTTCACGAGGAACAGCTACCGATAAGAGAGATCAAGAAAGAACCATTaacaaattatgaaaatgatcCCAATATCGAAATGGAGCCAGTGTTAGGTGGAGAGCTGCTTCTCAATCCTTTAgccataaataaaaacaaaccaGACATGGTAATGGAAGCTGATTCAACCCAGAAATCAGCAGTAGTCCCagtcaaaagaaaagtaagacgCGGTCCGCATACACATTACAGAGGACACCGAGTGTTCAAACAGAAATGTTCCTTCTGTCAGATCCACCTTCATTCAAAGTTCACCTACGCGAAACACATGGAGAAATTTCATTCAGGCGCCGAAAATGCTCAAGAGAATCAAAACGCAGAACCgccaaaaaagaaagcaaagtcGCCGCCACCTCGAAAGACAAAAGCTGTCACTGACGGATTAGGAGAAGTCGAAGAGATGATCGAGGACGTGGAGGAAGAAATAGACATCATGGACCAGGACTCATCCCTTTCGCAAGTTCAGCAAAGCATAATCAGTCAACTGAAGACATTTTCGTGTTACTCTTGTCAGCTTTCATTTCCCGACCGTCGAAGTACATTGTATCATATTAGGGAACACATGCCTGACCTACGACCTTACACTTGTGTGGCCTGCCTAACGGAATTTTCAGATAGATCCACTTATCAGTCTCATTGTGGTGCGTCTGTCGAGTGCGCCATGAAGATAGCTCTTGTGGTGCCCACAATGGGTATCGAGAAGCTCTTCACGTGTAACATGTGCCTGCGGCCATTGAACAATCGCAAAGAGCTTCTCAGTCATTTGTCCAAACATTCTGACAAGCAGTACGCAAAATTAACGACATCAATGAGCGTCCCGCCCAAATTGAAACCCATATCCTTACTGACGTCGGAGAAAATGAATACTGTGTCCGACGATCATATCCACGCTACCATGCCAAATCcttataaaaatggcgacccTGCGTTCAATCACGAGTGCGACTTCTGCGGAATGATATATCGATACAAGCCAAACATGTTGAAGCACCGTGACATATGCAAGAAGCTTCCGCCGGATGTCCGTACTATGTATAAGTGCGTCCATTGCGGCATGACCTTTAGGGTCTTCAAGAAGTTTCACTCTCATACGAGAGTGAAGCacaagaaaagagaattcaTTTGCTCAAAATGCTATGGGAAATTTCGATCGCCGCGTGATTACCTATCTCATCATGAGAGTCATATGAAGATCGTGTCAAAGGATGAAGAGTACGGGGTACTGGAGAACGGAGAGGATATGGTCCTGGATAACAAAGAGACCCACGTGTTAAGGAACaatgagaaaaagtataattgtGGACTGTGCAACATGGATTTTGGAAGTAGATCCGAGCTGACGAAGCACAGGAATGTGCATCTCAAAGTGAAGATCTACTCGTGCGTCATCTGTAGAAGTATGTTCAGTAGTGCTGGTGCTCTGGAGATACACATGAAGGAACATGGGATTGAAGATCCCAGGGAGAGGAAAGCAAACAGTTCCTGCGTGGAGTATGGAAGTTCTAGGGATGGTGAACGTAGTGCAGGTCACAGTACAAATTCCAGTGACACCAGGTTCAACTGTGACAGTTGCGACAAGAGCTTCTCCAACCTGGCGAACCTGCGACGGCATGTCAGAAGTGCGCACACGCCGAACGAGGCCTTCAAGTGTCCTGACTGTTTAAAGATCTTCAAGGACAAGACCGTTTACGAGCAACATGTCAAAGCCGAGCACAAGTCTTCAAGGCCGTCGTATCAGTGCATCAAGTGCACGAAGATCTTCGCCCTGCATGCGAACCTCGCGCTGCACATCGTGAACGTTCACGAGAACAAATTGGGTACGAGATTGCAGTGCGACATTTGTGgtaagaaatttattgaagAGACATCCTTGCGGATTCATAAAGGCTGGCACGCAAGGGCCAATTGTCGTTTGAACGCTGACAAGTTTCCAGATAGAAGGCACAGCGATCACGATGCCAAGAGGGTGAAGATCGAATCTACTCCTGTGGATTCGGCGAAGCCGGCCAGAGCCAGGAAGTCCTTGCCAAGTGTACCAACGACTAGGCAGTTGCATCAATTTCAGTGTTACGTTTGTCATGAAAATTTCAGGGAGATTAATCGCCTCAAGGTGCATCTTCAGGACGTTCACAATGCGGACGGCAAGGACGAGAAGAGTCACGTGAACAAGGAGTTGCATTGTGAACTCTGCACCAGTGTGTTCCAGGACAACGACAGCTTGCAAAAGCACATGCAGTGGCACAACGAGAATCCAATTTTGAGTATGCAGAGCCGCAAGAATTTCCAGTGCGACGTTTGCGGCAAGTATTACACCCTGAAGAAGAGTCTGGCGCGTCACAAGAAGCTTCACAAGGCGACGGCAGTGGCATCCCTGAAGTTTCAATCTCTAGCCAGAAAGCAAATGGCTGCCCTGTTTCAGTGCTCAGTATGTCGCAAGGTCTTCGATACCTACATGGGTCTGCAGAGGCATAAGGTCTGTCACGGATCTGAatcgaatacaaaaaaatcttccCAGTCAGTCCGTGCCACGAGAACATCAGTGAATATGGAGCACGAAGATCTAAGGAATCCTAAAATCGAATTGGACGATTCGCCGGAAGTCGATTCGCTTGATAACATTGGCACCAAGAAACCCCTCACGTGCACCCTCTGCAAGAAGGTCTTCCCCGGAATGAGTATGCTCTTCAAGCACAAACAGGTTGCTCATAACATCCGCTACAATAGACAATCCAAACAACCTAAAGTTGAGTTCATACCGATTCTCCAACGAAATGGTCGCGTCGCCTGTAATCTTTGTTCCAAGGAATTTCCAACGTTGCCAAGACTGAAGCAACACTTCACCCTGGTTCATAAGTCTGAGCACAGTGGCTGCACAGCTCATTGCTGCGACACTTCAAACGCTACTGTATCCAAATCAAAGAAGAAGGTTCATGGCGGACTCGTGGTCTTCTGTAAACTGTGCGAGAAGCACTTTGATAACAAAACTGATGTGGTGGATCATCTGATTGGGAAGCACAGATGTGGCGGCGATTTTGATAAGCAGGATAAATTCTTTTCCATGCTGAACTTGGACACTTACGTGGTGAACGGTGCGAACGGTACTATCTGTCCCACTTGCAATATCAAATATCCAAATTTGAGATCCctcaaaattcattatttcaaatttcacgaTTGTATATGA
Protein Sequence: MDEVDQLLNVEDLCRLCLSADQPKSSIFHGEDSSVSLARKIEACLSIEISQSDKLSTTICTECVTKVNQWHAYKESCLRSQDKLREWLARQTSSEFLGTAVKEEPMELDYNVEDDEILPECIEPSDKDSNYPRISCINVQEHSKEKESEHINEESQATGLLKNVVNLEVSGSPSKEPVHEEQLPIREIKKEPLTNYENDPNIEMEPVLGGELLLNPLAINKNKPDMVMEADSTQKSAVVPVKRKVRRGPHTHYRGHRVFKQKCSFCQIHLHSKFTYAKHMEKFHSGAENAQENQNAEPPKKKAKSPPPRKTKAVTDGLGEVEEMIEDVEEEIDIMDQDSSLSQVQQSIISQLKTFSCYSCQLSFPDRRSTLYHIREHMPDLRPYTCVACLTEFSDRSTYQSHCGASVECAMKIALVVPTMGIEKLFTCNMCLRPLNNRKELLSHLSKHSDKQYAKLTTSMSVPPKLKPISLLTSEKMNTVSDDHIHATMPNPYKNGDPAFNHECDFCGMIYRYKPNMLKHRDICKKLPPDVRTMYKCVHCGMTFRVFKKFHSHTRVKHKKREFICSKCYGKFRSPRDYLSHHESHMKIVSKDEEYGVLENGEDMVLDNKETHVLRNNEKKYNCGLCNMDFGSRSELTKHRNVHLKVKIYSCVICRSMFSSAGALEIHMKEHGIEDPRERKANSSCVEYGSSRDGERSAGHSTNSSDTRFNCDSCDKSFSNLANLRRHVRSAHTPNEAFKCPDCLKIFKDKTVYEQHVKAEHKSSRPSYQCIKCTKIFALHANLALHIVNVHENKLGTRLQCDICGKKFIEETSLRIHKGWHARANCRLNADKFPDRRHSDHDAKRVKIESTPVDSAKPARARKSLPSVPTTRQLHQFQCYVCHENFREINRLKVHLQDVHNADGKDEKSHVNKELHCELCTSVFQDNDSLQKHMQWHNENPILSMQSRKNFQCDVCGKYYTLKKSLARHKKLHKATAVASLKFQSLARKQMAALFQCSVCRKVFDTYMGLQRHKVCHGSESNTKKSSQSVRATRTSVNMEHEDLRNPKIELDDSPEVDSLDNIGTKKPLTCTLCKKVFPGMSMLFKHKQVAHNIRYNRQSKQPKVEFIPILQRNGRVACNLCSKEFPTLPRLKQHFTLVHKSEHSGCTAHCCDTSNATVSKSKKKVHGGLVVFCKLCEKHFDNKTDVVDHLIGKHRCGGDFDKQDKFFSMLNLDTYVVNGANGTICPTCNIKYPNLRSLKIHYFKFHDCI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01474139;
90% Identity: iTF_01199608;
80% Identity: -