Psmy011789.1
Basic Information
- Insect
- Pachycephus smyrnensis
- Gene Symbol
- -
- Assembly
- GCA_030142225.1
- Location
- JARQST010000620.1:438796-442836[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.032 2.3 9.0 0.6 1 23 46 68 46 68 0.95 2 13 0.0001 0.0076 16.8 2.4 1 23 106 129 106 129 0.98 3 13 1e-05 0.00076 20.0 0.5 3 23 137 157 135 157 0.97 4 13 0.00054 0.039 14.6 5.3 2 23 164 185 163 185 0.94 5 13 4.6e-07 3.3e-05 24.2 0.3 1 23 191 213 191 213 0.98 6 13 0.053 3.9 8.3 3.8 1 23 260 282 260 282 0.95 7 13 0.22 16 6.3 0.3 2 17 290 305 289 307 0.75 8 13 2.2e-07 1.6e-05 25.2 2.4 1 23 507 529 507 529 0.98 9 13 9.5e-05 0.0069 16.9 0.4 1 23 536 559 536 559 0.95 10 13 4.6e-05 0.0033 17.9 0.1 1 23 567 590 567 590 0.97 11 13 0.0093 0.68 10.7 5.8 5 23 599 617 596 617 0.96 12 13 0.0012 0.088 13.5 4.1 1 23 623 645 623 645 0.98 13 13 1.3e-06 9.5e-05 22.8 1.2 1 23 651 673 651 673 0.98
Sequence Information
- Coding Sequence
- ATGCTTGCATTTCTACAGAATGTAGAAGGAAACGATTCCAAATCTGAGATTTCTTCTCAAAGATGTAGTACATCTTTGAAAGCAAATGCAGATCATGTACAGGATCCTTGTCCGTTGGATATGAAACCCAAAGATTTTATATGCTCAGTTTGTGGTAACTGTTTCGcaggagaaaaacaattttatggACACTTGCAGGCACATACAGGAGAAATACATTGGAAATGCACTCAATGTCCAGAGTCCAATGTTGGCTTTGAGTCTCTTTCGAGACTTAAGATTCACGAGAATGCTTGTCATAATATAGTTAGACCTTTCAAATGCAAGCACTGTGATTTAGTTTTTGACCGAGCTTCCCAGCGAGATTACCATATGAGAAGCGTACATTTTGGTGAAAAATCACAAATATGCCAGATTTGTGGGAAAGGATTTTTTCGCAGAAATGATTTACGTACTCacttaaatattcatttaggTACAAATCTTTGCATTTGCGAAATTtgtggaagaaaattcaatcatGTATCAAATCTCATTAGACACTGCAGAATTCATGCAGgagTGAAACCATATCCTTGCTCTATATGTGGCAAAAGATTCACACAAATTGGTTCTCTGGCAAGGCATAAAAGAATTCATAGCCGAAAACAAGATAATATTAAAGCTTGCTCATTCAAAAACCAAGATAAGGCGCATTTCAATCTTAAAAATCAAGTTTCCAACAAACATGATCTACAAGGAGCGGAACCAGGTCAGCAAAAGCCTAGTAAACGCCAGCACTATTGCAAAATTTGTGGGGAAAGTTTTCAATTCATATTACTGTTACGACAACACGAAAAGCATCACTTGCATAGTGCTGAAGACCTGGAATGTAAAAGTTGTGGAAAGACATTCCAGAAAGTAGAAGAAATTAAGGAACACTGCTGTCGACCGCTTTCATCTTGTGATGTTAAAGtcgcagaaaaaaatgttaagaaGCCTTCaaaatccattaaaaagaaagataatctCAATAACACAGCTAACGACTCTCACGGTGCTGAAACTATTCTAACACAATTACAGGATAAAAGAATAGGAAATACTGAAACTGCTAACATatcaataaatgaaattaaagaacAAACAGTCCAAGAACAACCTATGATCTTCTCAGCATCAGACCAGGCTATGAATTTGAATTCGGAGGAAGCTGAAGAAATaccgaatgaaatattacaagaaCACTTGATGGAACTTGCCGGcaaaataaatactataaGCATGGCACCAGATCGAGATGCCAGTATCAATATTTCTGAAATACTTGAAACGTACAATTACGAAGATACCGAGAATAATTTAGAATTCCGACCAATAATGGACATGGATCCAAATACAACAAAGCAAGTTACTAGCGACGGTAATGATAAATCAAACACTATCAATTTCTACATAGACTTTAATCCAAATAATACTACAGCCACAGAAAGTAACGTACAGGACCAAAAACAAAAGTCCAAACCCTCCGTAAAGAAGTTTCAGTGCTCTGAATGCAATAAAAGCTTTTCTAGCAGCTACAATTTTAAACAACATATTGGCACACACTTTACAGACCAACAAAAGTTTCAATGCAAAGAATGTGGAATTCAATTCGCATGGAAATCAACATTGAACAAGCATATGGCATTGTATCATAGACCGGATGGGCCACAGAAATTTGTTTGCGAGATTTGCCCAAAAGTATATAACACTCTTTCTCAAGTGAACGAACACGTAAAGAGGGACCATTTAAAAGAACGCAAGCATGTGTGCCATTGtggtaaatcattttttaagaaGTTCGACCTAAAGACACATGGAAGAACTCATACTAAAGAACGGCCTTACGTTTGTCGAGCATGTGGAAAAGGATTTCATCATCAAAGTCATATTATTAGACATGAACGTATACATTCTGGCGAAAGACCATATTCCTGTGATATTTGTCAAAAGACTTTTACACAGTTAGGTTCGCTAAAGGCGCATAAACAACGTCATCGTGAGATACAAATTGATTTATTAGATTATCGATTAGATGAGGATGATCCGTTAGCACTGAATGTGCTATAG
- Protein Sequence
- MLAFLQNVEGNDSKSEISSQRCSTSLKANADHVQDPCPLDMKPKDFICSVCGNCFAGEKQFYGHLQAHTGEIHWKCTQCPESNVGFESLSRLKIHENACHNIVRPFKCKHCDLVFDRASQRDYHMRSVHFGEKSQICQICGKGFFRRNDLRTHLNIHLGTNLCICEICGRKFNHVSNLIRHCRIHAGVKPYPCSICGKRFTQIGSLARHKRIHSRKQDNIKACSFKNQDKAHFNLKNQVSNKHDLQGAEPGQQKPSKRQHYCKICGESFQFILLLRQHEKHHLHSAEDLECKSCGKTFQKVEEIKEHCCRPLSSCDVKVAEKNVKKPSKSIKKKDNLNNTANDSHGAETILTQLQDKRIGNTETANISINEIKEQTVQEQPMIFSASDQAMNLNSEEAEEIPNEILQEHLMELAGKINTISMAPDRDASINISEILETYNYEDTENNLEFRPIMDMDPNTTKQVTSDGNDKSNTINFYIDFNPNNTTATESNVQDQKQKSKPSVKKFQCSECNKSFSSSYNFKQHIGTHFTDQQKFQCKECGIQFAWKSTLNKHMALYHRPDGPQKFVCEICPKVYNTLSQVNEHVKRDHLKERKHVCHCGKSFFKKFDLKTHGRTHTKERPYVCRACGKGFHHQSHIIRHERIHSGERPYSCDICQKTFTQLGSLKAHKQRHREIQIDLLDYRLDEDDPLALNVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01474894;
- 90% Identity
- -
- 80% Identity
- -