Basic Information

Insect: Pachycephus smyrnensis
Gene Symbol: -
Assembly: GCA_030142225.1
Location: JARQST010000352.1:897610-901353[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 0.26 19 6.1 3.4 1 23 399 421 399 421 0.93

2 21 0.0019 0.14 12.8 0.2 1 21 429 449 429 449 0.96

3 21 0.031 2.2 9.0 0.0 1 23 458 480 458 480 0.98

4 21 7 5.1e+02 1.6 0.1 2 13 507 518 506 528 0.72

5 21 0.048 3.5 8.4 0.8 1 23 536 559 536 559 0.92

6 21 0.019 1.4 9.7 0.8 2 23 566 589 565 589 0.87

7 21 0.44 32 5.4 0.2 2 23 622 643 621 643 0.91

8 21 0.15 11 6.9 0.6 2 23 652 674 651 674 0.93

9 21 0.00083 0.06 14.0 2.2 1 22 680 701 680 704 0.91

10 21 0.00032 0.023 15.3 6.5 1 23 788 810 788 810 0.98

11 21 0.0036 0.26 12.0 0.2 1 23 817 840 817 840 0.95

12 21 0.0001 0.0076 16.8 2.1 1 23 846 868 846 868 0.98

13 21 0.00071 0.052 14.2 2.1 1 23 874 896 874 896 0.97

14 21 2.2e-05 0.0016 18.9 0.8 1 23 902 924 902 924 0.97

15 21 0.27 20 6.1 0.3 1 23 937 960 937 960 0.95

16 21 0.00015 0.011 16.3 3.9 1 23 976 999 976 999 0.96

17 21 0.0012 0.087 13.5 1.3 1 23 1007 1030 1007 1030 0.96

18 21 5.9e-05 0.0043 17.6 1.6 1 23 1036 1058 1036 1058 0.98

19 21 0.0074 0.54 11.0 6.9 1 23 1064 1086 1064 1086 0.98

20 21 0.00012 0.0087 16.6 4.1 1 23 1092 1115 1092 1115 0.98

21 21 0.08 5.8 7.7 5.4 1 23 1121 1143 1121 1143 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	0.26	19	6.1	3.4	1	23	399	421	399	421	0.93
2	21	0.0019	0.14	12.8	0.2	1	21	429	449	429	449	0.96
3	21	0.031	2.2	9.0	0.0	1	23	458	480	458	480	0.98
4	21	7	5.1e+02	1.6	0.1	2	13	507	518	506	528	0.72
5	21	0.048	3.5	8.4	0.8	1	23	536	559	536	559	0.92
6	21	0.019	1.4	9.7	0.8	2	23	566	589	565	589	0.87
7	21	0.44	32	5.4	0.2	2	23	622	643	621	643	0.91
8	21	0.15	11	6.9	0.6	2	23	652	674	651	674	0.93
9	21	0.00083	0.06	14.0	2.2	1	22	680	701	680	704	0.91
10	21	0.00032	0.023	15.3	6.5	1	23	788	810	788	810	0.98
11	21	0.0036	0.26	12.0	0.2	1	23	817	840	817	840	0.95
12	21	0.0001	0.0076	16.8	2.1	1	23	846	868	846	868	0.98
13	21	0.00071	0.052	14.2	2.1	1	23	874	896	874	896	0.97
14	21	2.2e-05	0.0016	18.9	0.8	1	23	902	924	902	924	0.97
15	21	0.27	20	6.1	0.3	1	23	937	960	937	960	0.95
16	21	0.00015	0.011	16.3	3.9	1	23	976	999	976	999	0.96
17	21	0.0012	0.087	13.5	1.3	1	23	1007	1030	1007	1030	0.96
18	21	5.9e-05	0.0043	17.6	1.6	1	23	1036	1058	1036	1058	0.98
19	21	0.0074	0.54	11.0	6.9	1	23	1064	1086	1064	1086	0.98
20	21	0.00012	0.0087	16.6	4.1	1	23	1092	1115	1092	1115	0.98
21	21	0.08	5.8	7.7	5.4	1	23	1121	1143	1121	1143	0.97

Sequence Information

Coding Sequence: ATGAACTCTACGAAAACGTTCATTGTGAAGGTAGAGAATTCACATATTACGTTATCAGTAACAGACACATTTAAAGACCTGCAGATGAAGTTGAAGGAAAACGGGATAGATGTAAACATAACGTCGATGCTACTTAAAGGAAGAGTGGTTAATGAGTCTTCTGTCGTATCAGAGTGCCTTAGTGTCgaaaatagGGACGTGGAGTATGAGACTGTAGAATTTGTATTGCCAGATTTATCTGAAATGTCagaaatagaaatgatttCAGGTGAAGatgTCGAAACTGAAaagattaaatattcattgtgTCGATTATGTGGCATGAGGACAGAAGAcccaattaatatttttgaggaatcgaaaattacagaaacaataaacaaatttttaccaATATCTATATGTCAAGAAGATACATTATCACGATATATATGCAGTCCATGCCACAAGAAAATTATCTTCATTCAGGACTTCGTTTTACTTTgtatagaaaatgaaaaaagattgTCAAACCTAACTACTTCAGCAGACCGATCCATTGACATTTCACTGAATGACAATACAGAAGTTgagaaaatattgcaaatacatgaaaaaacaaaaaaatacagatgTCCCAATTGCAAAGTAAATCTAATCATCCCCAAAGATGTTAAATcagaaaattttgatagtgCCTTTCAAATAACTTTAAATTCAACAGATAGTACAGATGAATCTGAGATAAATGCAGAGATAAACAAACAAGAATCAGGGATTGTATCACGGAAAGATACACACCAACGAATAAGTACCAGATCGGAAAGAAATTTACGATCATCCAGTTTGcctgataaaagaaatacagttAATACAAGACGTACAAGAAGGCAAACCCAGAATATATCTAGGTCTATGAAATCAAATACTACAGAGAGTCtcgcaaaaaatataaataaaagtgtaaATAAAAGATCTTTTCGAGAAAAGGGTAAAACTAATTTGCGAGATATCAGAAAGAGAATATCGAATAGCGATcatgacaatgaaaaacatGCACAATCaccaaagaagagaaaaatggttTCTAACACCATTGAAAATACTTTCCTCACAATTGATGCGAATTTGGATGTTTCTAGTATTACTGGTGAATTCGTTGAATTTGATACTCTGGAGGAAAGTAATGACGATAGTATAAAAAGGCCAATGAAACATAAATGCGATATATGTGATTCAGAATTTTCCTCGGAAGATCATTATCGGTTTCATGTGGATCGACATGAGACATCCCGTTTCGATGATTTTAAATGCCCTACATGTAAGAAAGAATTATCCTCTGAGGATAGTTTATGGGAACATCAACAATGCTGTGAAACAGATCTTCAATACTATAGTTGTACATTATGCGAGGAAACGTTCCTTGAAGAGGGATTATTAATTGATCATATGCAAATTCACGATCAGGAGGATGAAAAATCTCTTAATACAGATACGGATACAGTTCAAtcagaaaatggaaaaaaatcgaCTAAGTTAACGTGCGAAATATGTGGAGCACGCTATGTATTACGGGAACGATATGAATTTCATGTAGAAAGGCATAATTTTGGAAGCATCAAGACTTTTTCGTGTCTAATTTGTGAAAAGCGATTTAAGAGTGAAAATATACTTTGGGATCATTACCAATATCAACATAGAACAGGCGAGAGATTCGCTTGTATAACTTGTGAGAAAACATTTGTCAAACGAGCAACCttgaattatcatttaaagaCATTTGGCCACAAGGGTGGAAAATTGGTGAACAGCATTGAGCATAATCATAGCGCTGATTCCAGTAATGTAAAACTGTCTGACGTTGGTAAACCACGACCTAAGATAACTTGTTCAGAATGCGGAGCTCGTTTTGTTTTACAAGAAAGATATGAATTCCATATGGAAAGACATAAATCAGGAAAAATGGATGCTTGCGTGTGCAACCTGTGCGGTAGAGAATcaacaaatgaaaatgttctGTGGGATCATTATCAGTACATGCACAAACGCACGAAACGTTACGTTTGTACTACATGTGGAAAGTTGTTTCACAAACAGTCAATGTTGAGTAGGCATCAAGTGAAATACGGACACAAAGgtacaaaagaaatagataTCGAAACGGATGACAATGCTATAACAGTAGATAGTGCTGCCTTTAAAAAGGTCATAGCCGAAGAGGTAGTAGAAATGAAATCAGTGAATTGCGTACTCTGTGGAGAAATAGTATGGGGTGTAGACCCAAATTTGATAAATGATGCTGTAACCTGTTCGAGTTGTGAGAGACCTGGACTATCTTTGCAAGTAGATTCCGACGGTGCCAAGGTAATATCACGTCGTCAGTACCACTGCAACATGTGTAACAAACATTTCACAACAAAAGATCGCCTGGAGTATCACATAATGCGCCACTCGGAAAACATGGAGGAATTTGTTTGTAGCACTTGTGGAAAAGAACTCAGTACCGAACAAGCTTTGTTCGAGCATTATTTGTACGTGCACAAAGGTGCAAGACCACACGTTTGTGAGCTTTGTGGAAAATCTTATCAATTCAAAGCTCGGTTGAAGGAGCATATGAGAAGTCATAGTGGGGAACGACCATTCGCCTGTGAAATATGTGGACAACGATGTATGACGAATAATGCGCTACGTTCTCACAAAAAAACTCATATCACGGAGAAGCGATTTCCGTGTCAAATTTGTAAGAAAGCATTCAGAAAAAGGCAGGACTTGAACGAACACTTAGAGAGACACTGGAAGAATGACAAAACGATGATGTTACCGCAGGTGTTCAGTTGTGCTATTTGTATGGAGATGTTTCCGACTTTTCGGATTCTAAAAAAGCACATGAAAGAGGCTCACAGCGTGGAGAGTCAGGATCCTATATTGACTGAATTACAACCATGGTTCGAGTGCGAAGACTGTCATGAGAAATTCAAGCATCAAATGTCTTTGAAAGTTCATCGTGAGAGGGTTCACGAGGGTAAAATGAAGCCTGTTTATCATTGTGACATATGTGATATCACATATAAGAATGCGCGAGTACTCTCAAatcacattaaaaataaacacgAGGGTGGTAAACGGTATAAATGCGCTCAATGTGGTAAAGAGTACAATCAGTCTACGTCTTTGcataatcatattttattgcatactGGAGAAAAGCCGTTTAGCTGTGAACATTGCGAAATGACATTTCGCACTAAGGAATCACGCGATCATCATCAACGAAAACACACTGGAGAGCGTCCTTATAAATGTCCACATTGCGACAAAACATTCGCTACTACAACTCAACGTCGAGAGCATCGGAAACGAGAACATGATGAAGGCAATAATCACCATTGTCCAGAATGCGGGAAAGTATGTTTTGGTGAACATGGCGTTCGAAGTCATTTAAATACTCATATGGCCGAGAAACAGCATTCGCATAATACTATGGCATAA
Protein Sequence: MNSTKTFIVKVENSHITLSVTDTFKDLQMKLKENGIDVNITSMLLKGRVVNESSVVSECLSVENRDVEYETVEFVLPDLSEMSEIEMISGEDVETEKIKYSLCRLCGMRTEDPINIFEESKITETINKFLPISICQEDTLSRYICSPCHKKIIFIQDFVLLCIENEKRLSNLTTSADRSIDISLNDNTEVEKILQIHEKTKKYRCPNCKVNLIIPKDVKSENFDSAFQITLNSTDSTDESEINAEINKQESGIVSRKDTHQRISTRSERNLRSSSLPDKRNTVNTRRTRRQTQNISRSMKSNTTESLAKNINKSVNKRSFREKGKTNLRDIRKRISNSDHDNEKHAQSPKKRKMVSNTIENTFLTIDANLDVSSITGEFVEFDTLEESNDDSIKRPMKHKCDICDSEFSSEDHYRFHVDRHETSRFDDFKCPTCKKELSSEDSLWEHQQCCETDLQYYSCTLCEETFLEEGLLIDHMQIHDQEDEKSLNTDTDTVQSENGKKSTKLTCEICGARYVLRERYEFHVERHNFGSIKTFSCLICEKRFKSENILWDHYQYQHRTGERFACITCEKTFVKRATLNYHLKTFGHKGGKLVNSIEHNHSADSSNVKLSDVGKPRPKITCSECGARFVLQERYEFHMERHKSGKMDACVCNLCGRESTNENVLWDHYQYMHKRTKRYVCTTCGKLFHKQSMLSRHQVKYGHKGTKEIDIETDDNAITVDSAAFKKVIAEEVVEMKSVNCVLCGEIVWGVDPNLINDAVTCSSCERPGLSLQVDSDGAKVISRRQYHCNMCNKHFTTKDRLEYHIMRHSENMEEFVCSTCGKELSTEQALFEHYLYVHKGARPHVCELCGKSYQFKARLKEHMRSHSGERPFACEICGQRCMTNNALRSHKKTHITEKRFPCQICKKAFRKRQDLNEHLERHWKNDKTMMLPQVFSCAICMEMFPTFRILKKHMKEAHSVESQDPILTELQPWFECEDCHEKFKHQMSLKVHRERVHEGKMKPVYHCDICDITYKNARVLSNHIKNKHEGGKRYKCAQCGKEYNQSTSLHNHILLHTGEKPFSCEHCEMTFRTKESRDHHQRKHTGERPYKCPHCDKTFATTTQRREHRKREHDEGNNHHCPECGKVCFGEHGVRSHLNTHMAEKQHSHNTMA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00293924;
90% Identity: iTF_00293924;
80% Identity: -