Basic Information

Gene Symbol
-
Assembly
GCA_030142225.1
Location
JARQST010000526.1:306171-313623[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 31 8.3e-06 0.0006 20.3 1.0 1 23 188 210 188 210 0.98
2 31 0.0036 0.26 12.0 1.9 1 23 233 256 233 256 0.96
3 31 0.0003 0.022 15.4 1.0 2 23 263 285 262 285 0.96
4 31 0.0004 0.029 15.0 0.5 1 21 305 325 305 326 0.95
5 31 0.0033 0.24 12.1 0.2 2 23 423 444 422 444 0.95
6 31 0.019 1.4 9.7 0.3 1 23 450 473 450 473 0.91
7 31 0.00016 0.011 16.3 0.1 1 23 546 569 546 569 0.96
8 31 0.013 0.97 10.2 0.7 1 23 575 598 575 598 0.96
9 31 0.16 12 6.8 1.5 1 23 611 633 611 633 0.97
10 31 3.4e-05 0.0024 18.4 0.6 3 23 678 699 676 699 0.96
11 31 0.011 0.78 10.5 0.8 2 23 762 785 761 785 0.94
12 31 4.1 3e+02 2.3 0.0 2 23 794 816 794 816 0.84
13 31 0.054 4 8.3 0.0 2 23 823 845 822 845 0.95
14 31 1.7e-05 0.0013 19.3 1.2 1 23 853 875 853 875 0.98
15 31 0.053 3.9 8.3 1.2 3 23 907 929 905 929 0.91
16 31 0.00028 0.02 15.5 3.3 1 23 932 955 932 955 0.97
17 31 0.039 2.9 8.7 0.5 2 23 962 984 961 984 0.95
18 31 0.0043 0.31 11.7 5.1 1 21 1011 1031 1011 1032 0.95
19 31 0.0036 0.26 12.0 1.8 2 23 1046 1067 1045 1068 0.93
20 31 0.28 20 6.0 0.9 1 23 1071 1094 1071 1094 0.94
21 31 0.022 1.6 9.5 1.4 2 23 1101 1124 1100 1124 0.91
22 31 1.3 93 4.0 0.2 2 23 1132 1154 1132 1154 0.95
23 31 4.1 3e+02 2.3 0.0 2 23 1161 1183 1160 1183 0.87
24 31 0.3 22 5.9 2.7 2 23 1192 1214 1192 1214 0.96
25 31 4 2.9e+02 2.4 2.0 2 23 1220 1242 1220 1242 0.92
26 31 3.5 2.5e+02 2.6 0.0 3 23 1305 1326 1303 1326 0.93
27 31 0.00048 0.035 14.7 1.0 1 21 1352 1372 1352 1373 0.95
28 31 0.66 48 4.9 1.3 2 23 1472 1494 1471 1494 0.93
29 31 0.81 59 4.6 0.4 2 23 1501 1523 1500 1523 0.94
30 31 0.92 67 4.4 2.5 1 23 1534 1556 1534 1556 0.97
31 31 0.043 3.1 8.6 0.2 3 20 1565 1582 1565 1584 0.95

Sequence Information

Coding Sequence
ATGTATCAATTCCAAACTGTGACAAGACTCCAGataGCGGAGGATGATCGTTTGCCAAAGTGTCTATGCTACCGGTGCATGTACAAcctggaaaatttttatgactTCAGAACTGCATGTGTCAATGCAGTGGAATTGTTGGAAAGATGTTTACCCTCCAGTGATACGAGTAACAATGGAGCGCAGACTCATATGGATCAGTATACAGAGCTGCGCTCTGAACTTCTCaaggagaaggaaaatatGCCTATACTCATTCCTGAAGCCCCCATAGTCAATCCCAATGCAGCATTGGGCACTCCACCAAGACTGAATTCTGATGGTGAAGCGGATCATGAGATTGAGGAGATACTTGATCAGAGTGGCACCGATGAAGgTCAAGACGAGCACGAGGATCCTAAATCGGATGAGTATGAAATGGATATGGAAACGAATCCAAGTGATTTCCTGGAGATGACGTCCATGGTCACTGACGACGTTGAGGAGATACGATCTCTCTCCATGCCACTTGAGAAACAAGACACCAGTGTTTTTCAGCACACGTCAGAGCAGCACGAGGTTTACGTGTGTTCTTTGTGCAACAAGGCCTTCAGCTCGAAAGGGCATCTCTCCTTGCACGCCAGGATCCATGTGGGTGCTGGTGATGTAATCGGCGAGAAAGTCATCACCGATGATCACACCTCCTACAAGAGACCTTATCAGTGCGACCTCTGCAATAAGTCGTACTCGACGGCAAAGCACAGATGGGGACACGTCTCCACGACGCATAGGGGTCATCCAGCCGTTACGTGCAGATACTGCTCTCGGATCTACTCGACGAGGACGAACCTGGAGGAACACATAAAGTCTCGTCATGCGGGCTTACCACCGCCTCCGGAATTGCCACTTCCCTACGTTCAACCTGACAACAGGTTCCAGTGCAAGACGTGTCCGAAGATGTACACGAACGTCACCGACCTGAATAAGCACAGTCGAGTCTGCCTTGGCGAGAGACGTAGGGAACTGCCCAACAAGATTTCCGTTCAGAAGAGCAAGAGTCTTGTAGACACCTCGGATCTATCTAGTATGGACTCCGACGACGAGAGTAAGGACTATCGGGATGCCGAAGCGAAACTCGCCAAGAATCCCCAGCTGACTATACTTAAGCAGGCGCTGACCAAGGGCGACAGCCTTAAGCGGGATTACGAGGACAAAAATAGACTTGGCTCGAAGCCTAAGAAAGTCGCGAGGACAGACAGCAGTGAAACCGATGCCCAGAAGAGGTGGTACTGCGAAACCTGCCCTCAGAATTTCACCTCAGTGGAGAATTTGAAGGAACACGAAGTGACCCACGACGCGAACAAACCCTACATCTGCATCCTCTGCGAGAAGGACTTCGTCCTTAAGTCCTCTCTCAGTAGACACATTCTGTCCTCTCATGGGGTCGATCCTTGTCCAATCGTCGACAGTGATAAGTGTCTTAAGAAAACAGTGGCTAATCTGCAAATGCGGAATAAGCAGGCGCAACTCATCTGCAACGAGTCGAAGTTAACCAAAGAGGCATCCCAATCTCCATTCTCGCCAGAGATGAATATGGACAACGACGAGGAGGATCGTGAGAGCGGCCACGAGAACATGATTGAAATCGAGACTGTGTTTGTCTGTGAAATATGCACGAGGGATTTTAATGATCGCGCATCATTGTGGTTACACATCAGAGCGACGCACAAAGAATTCGCAGCGTTTGCTTGTGGAGTCTGCTTAAAGATTTGCTCGGACAATACTCAACTCTTGAATCACGTTAACATGTACCACGGTGGCTCAAAGCTTCAGGTCTCAGAACAGAGAagGTATAGCTGTACAATCTGTGGCAGGCAGCACGATTCCAGGAAGAAGCTCATTACTCACGTCTCTATTCATAATGTCGATCCTGGTTACGATCCAGCGAGTTTTGTTCAACTGAacagtaattattataatgagaATCTGAATAGTAACGAAGCCAATGAGCAGCCTATTGATTTTGATGGCGAAGATGGGGAGAAGATCGACTGTTATATATGTTACAAGTCCTTTCCTAATGAGGATCATCTCATTAGGCATCAGCGGAATGCTCACAAGtcCGAACCCCTGGTGCAGATGGGTGACCCTGGCAATGGCAATGGGTCCGGCTCTACTCCAGGCAATGGAAATCGTGCTCAGtatcatttgttttttgtttgtgAACTTTGTGGCAGTTCGCATCCAAGTAAATGGGAACGCTGGCTGCACGTTAGTGGAGTGCACAGTAACGAACCTGCCATAAGGTGCGAGCGCGAAGACTGCGGTAAAATATTCGCTACCAGGTCGCTACGCAACGAGCACGTGCAGCATCATCTTCTTCAGGGTGCCTCGCCGAATACCTGCGAGATCTGCGGGAAGCTGTGGGGCAGTCGTGTGGATTATTGGAAGCATGTAATGGGCGTGCATTCTGACACGGTACCCTTAATATGCGGGGTATGCCTGAAGGTCTTCCCCGACGTCATCCAACTTAGCGCTCACGTCAAGTCGAATCATTGGCCTCTGACTAACGGAGACTTCAGCTGCGACATCTGCGGGAGGCCGTACTCCAATAAATCAAAAATGTCCAGGCATAGGAAGATACATGGTTTGGATATGGACAGCTACGCCAATAGCACCCTGCACGAGGCTATGAACGATTCTAGGCTGGACCAGGGTTGCCACGAGAGCGACCTCATCTGCGAGATGTGCTCCGACCTCAAATTCACTAACCTGGACGACCTGTGCAACCACAGAAGAACAGCGCATGGACTGTTCCCTTGTGATCTTTGTAATAAGTGCTACGGGCGGACCTCGCACCTTTGGAAACACGTCAACCGCGTTCACAAGGGTCACGAGGACGTCACCTGCAGGTACTGCATGAAGACCAGCGCCTCGAGGGATCATCTCGCTGCTCACATAGCCAAGATACACAGGTACGAGCCGGAgatgaagaaggagataagggAGTCGTCCATCTTCAAGTCGCCCAATCCCGAGGACGAGGCTCTTCATCATTGTGAAAAGTGTAACAAGGGTTTCCACAAGAGGTATCTTCTCCGTCGTCACATGAAAGGCTGTCAGAATTACAGAAAGGATCCTGGTGCATTGCTCACCAGGTGTCGTGCCTGCGAGAGGATATTCAAGGATCGTGCTAGTCTTCAGAAACACATTGAGAATCATCACAGTACCTATACCTGCCATCTCTGCGACGAGACCATAACCTCCAAATTAGGTATCATGACGCATAATAGAGTGAACCACATGAACCATCCCGACCTGACTTGTGACTATACCAGTTGCAAGAAACTGTTCCGTACCAAGGAAGACCTGGAGTCTCATCGCAAGGATCACAAGTACCATGGTACTCCTAACGTCTGCGACTTTTGCGGTGATACCGTTGAGAATAAGCTTAAGCTCAAGATGCATATACTGTCCTTGCACCGTAATGAAATTGGAGTATCCTGTGGTGTCTGTCTTATACCCATGAAGGATCCTAAGGAACTCAAGAGACACGTCGAGGACGTCCACAGGAGTATACTGTCTAAGCCTAACACCTGTCAGGTGTGCGGCAAGCAGTACGCCTCCAAGTGGAAGGCTTTTGACCATACGAAAAAGTGCCACGGTAAGGTGTTCAGGACTTGTAAACAGTGTCTAGCAGTGTTCACCAGTGACGAGGATATAAAGCATCACTACGAACACGTTCACAACGTCCCCAAGGATCAGCTTGCTGGTTTTGAGTTCAGGTTGGACGTCGGTCCCAAGCAGGAGGAGTTTGACGCCCCTGAGATCGTCGTTAAGGAAGAGCCTGAAGATCTTGATTTCTACGAGGAGCCTTGCGAGGATGACTACCACAACTCTAAGAGAAGGAGGTCGTTGTCCGATACTCTGGACTGTGAGATGTGTCCTGAGATCTTCCTGAACGACGTCACCCTGGCCGAGCACTACAGAAACGTTCACAATACGGATCCTATGCGTATATTCAAGAAGCTGAAGCTGGACACTGCAAGGCGAAAGACGAAAAATCGCGAGAACTTTGAATGTAAGAACTGCAGGAAGCAGTTCTCCACGAAGACCCTCTTCTGGAATCATATAAACGTTTGCTCCAGGCGTAATTCTACCAACAGGGACGACAGGGTATACCCCACGTCCATCCTGGAGTCTCACCTCAAGAATAACAATCAGATTAAAAAAGAGGAACCTGAACCCATCCTCAACGAGTCCAATCTGAACATCCCGGACTTCAATCTCTTCGAGGATATTAATATGCAGCTCTCTGGACAGAAACCTGTACCTAACCTCATGCCTCTGTCCCACATGAAATCGTTGTCCAGTATGAAGTGCTCGAGGAAGGACTCCAGGAAGGTGTACGACGAGTCGACGAATACCGAGTGTGCCTGTGAAGTCTGTGGTAAACAGTGGCCTGCTAAGAAGCATCTATGGCAGCATCTTATAAGATTTCACAGAGCGGAAGCTGCTGTCACCTGTGGCGTTTGTCTGAAGCTCTGTAAAACTTATCAGGACCTGGCGGATCATCTCAAGGCAGCCCACGAAGCCATCCTCACCTGCGAGGGTAACAATTTTACATGTAAAACCTGCGGCAGGTATCATAATGCTAGAAGTAAATTACTCTTACATATGAGCATACACATTAACTGTAATGGTAGCAGCTGGTGTAGAAAATGTCAACAGAGTTTCGAGAGTGAAGACAAACTCAAGGAACACATCGCCATCTGTACTGGTGGTAACCAGGTAGAGTACGAGGAGCATAGTAACGACCTGGAGAACACTGCCAAGAACAATGAGAATGATCACGATTACAAGAATATCCTTATGGAGGACGAGAATTCCTTGATGGAGGAAGTGGACGAGGTCGAGGAAGTTGAGTTTGAGACTGAAGCTTCTGATAATCGTGAGGATAGTAATTCCGACGATAGTAATGATTCCGATAGTGATAGTAATCCTAGTAGTAGTGATGACGAGGATAACGATAATGAGAATGAGGACGAGGCTGAGTGTAGGACTAACAGCAGAGCTACTGAGGTTAGCAGTGACAGTGAGAGTGAGGATCAAGATTCGGATGAGGATAACGTTAATGTAGCTAAGGATCATCAGCTGGAGGAGAGTGAAGACGTCAAGTGTAATAACATTGTCAAGACAGAACCTGAGGATGAGGAATATCAGTATCATCATCAGGATAAGGAAGAGTCTCCTGCGTTGAAGGTAGACGAATATCCTATGGAGGAAAGGAAGGATCATGAGAATCATGAGGTTGTCAAGGTCGAGGTTGACGCTCCGGATTACTCTGATGATGACGtagacgaggacgacgacgatggACCCCCGGTACTTAGTCCAATGATGCCATTACCACCGGTGCAGGAAGCAGAACATGACAGCAGACACTCGGACGACGAGATACAGCATGAATTAACGCCTATGGTGTctataaaaaagtcaaatgagactgaagaagaagacgatgaTGATCATCAGGAGTTGAAGAACCAAATGGAGAATGGTAAGTCGACCTCCAGTTCGTCAGAGTATTATGAGAAGTCTGATCCGCAGAAGGTGAGCTCAAATGTGCCTTCACTAGTAGTGGGAGAATCGCAATCAGATACAGAAGAGGAGGGCGAGGGTGAGGATGACGAGGAGGAGTACGACAGCCAAATGGAAGCTATGGATCAGGACGacgaagagaataaaaggtTTATCAGTTACGACACGCATAACACTGAAGACTCCGTCGAGGGTAGCTTCCCAGAGAATTCCGAAGACGAGACAATGGAGGTCGAGGTTGCCGACGGAGATGGTAGCGTCCAGATACACGACTTGGACGGTACTGTACTGATGGTAGCGAATGACTCAGACGGTAATCAGATTCTAATCCAAAGGAATGTCGCCGACGTGATGGAGAATGACGATTCTAATCCGGAAGTGACTGAGTACGTCTATCAGGAAGGGCAGGAGTACGAGCTGGAGGAAGGTTATGCGGAGTCGCAGCAAGCAGATGAGGTTCAGGACGTTTCCGATGAGGTtcaggaagaggaggatgagatCGGTAACGAGGAATCCGACGAAGGGGTCCCTACGAGGGAAAACGAAGCTGACGAAAACGAAGctgacgaagacgaagacgtgGAACACGAACAAGAGgagcaggaggaggaggaggaggaggagcaggAAGCGGAAGACTGCGAAGAGGAGGTCgtcgacgaggacgaggattcCCAGAAGCCGATTAACAGTGCCAAAACCGAAGTGTCAAGGACGTAA
Protein Sequence
MYQFQTVTRLQIAEDDRLPKCLCYRCMYNLENFYDFRTACVNAVELLERCLPSSDTSNNGAQTHMDQYTELRSELLKEKENMPILIPEAPIVNPNAALGTPPRLNSDGEADHEIEEILDQSGTDEGQDEHEDPKSDEYEMDMETNPSDFLEMTSMVTDDVEEIRSLSMPLEKQDTSVFQHTSEQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDVIGEKVITDDHTSYKRPYQCDLCNKSYSTAKHRWGHVSTTHRGHPAVTCRYCSRIYSTRTNLEEHIKSRHAGLPPPPELPLPYVQPDNRFQCKTCPKMYTNVTDLNKHSRVCLGERRRELPNKISVQKSKSLVDTSDLSSMDSDDESKDYRDAEAKLAKNPQLTILKQALTKGDSLKRDYEDKNRLGSKPKKVARTDSSETDAQKRWYCETCPQNFTSVENLKEHEVTHDANKPYICILCEKDFVLKSSLSRHILSSHGVDPCPIVDSDKCLKKTVANLQMRNKQAQLICNESKLTKEASQSPFSPEMNMDNDEEDRESGHENMIEIETVFVCEICTRDFNDRASLWLHIRATHKEFAAFACGVCLKICSDNTQLLNHVNMYHGGSKLQVSEQRRYSCTICGRQHDSRKKLITHVSIHNVDPGYDPASFVQLNSNYYNENLNSNEANEQPIDFDGEDGEKIDCYICYKSFPNEDHLIRHQRNAHKSEPLVQMGDPGNGNGSGSTPGNGNRAQYHLFFVCELCGSSHPSKWERWLHVSGVHSNEPAIRCEREDCGKIFATRSLRNEHVQHHLLQGASPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPDVIQLSAHVKSNHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLDMDSYANSTLHEAMNDSRLDQGCHESDLICEMCSDLKFTNLDDLCNHRRTAHGLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCRYCMKTSASRDHLAAHIAKIHRYEPEMKKEIRESSIFKSPNPEDEALHHCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCDETITSKLGIMTHNRVNHMNHPDLTCDYTSCKKLFRTKEDLESHRKDHKYHGTPNVCDFCGDTVENKLKLKMHILSLHRNEIGVSCGVCLIPMKDPKELKRHVEDVHRSILSKPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTSDEDIKHHYEHVHNVPKDQLAGFEFRLDVGPKQEEFDAPEIVVKEEPEDLDFYEEPCEDDYHNSKRRRSLSDTLDCEMCPEIFLNDVTLAEHYRNVHNTDPMRIFKKLKLDTARRKTKNRENFECKNCRKQFSTKTLFWNHINVCSRRNSTNRDDRVYPTSILESHLKNNNQIKKEEPEPILNESNLNIPDFNLFEDINMQLSGQKPVPNLMPLSHMKSLSSMKCSRKDSRKVYDESTNTECACEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCKTYQDLADHLKAAHEAILTCEGNNFTCKTCGRYHNARSKLLLHMSIHINCNGSSWCRKCQQSFESEDKLKEHIAICTGGNQVEYEEHSNDLENTAKNNENDHDYKNILMEDENSLMEEVDEVEEVEFETEASDNREDSNSDDSNDSDSDSNPSSSDDEDNDNENEDEAECRTNSRATEVSSDSESEDQDSDEDNVNVAKDHQLEESEDVKCNNIVKTEPEDEEYQYHHQDKEESPALKVDEYPMEERKDHENHEVVKVEVDAPDYSDDDVDEDDDDGPPVLSPMMPLPPVQEAEHDSRHSDDEIQHELTPMVSIKKSNETEEEDDDDHQELKNQMENGKSTSSSSEYYEKSDPQKVSSNVPSLVVGESQSDTEEEGEGEDDEEEYDSQMEAMDQDDEENKRFISYDTHNTEDSVEGSFPENSEDETMEVEVADGDGSVQIHDLDGTVLMVANDSDGNQILIQRNVADVMENDDSNPEVTEYVYQEGQEYELEEGYAESQQADEVQDVSDEVQEEEDEIGNEESDEGVPTRENEADENEADEDEDVEHEQEEQEEEEEEEQEAEDCEEEVVDEDEDSQKPINSAKTEVSRT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00295442;
90% Identity
iTF_00297739;
80% Identity
-