Psmy006325.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Pachycephus smyrnensis
Gene Symbol
-
Assembly
GCA_030142225.1
Location
JARQST010000338.1:134908-140106[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.00031 0.022 15.3 0.2 1 23 47 70 47 70 0.98
2 21 9.4e-07 6.8e-05 23.3 0.8 1 23 112 134 112 134 0.97
3 21 0.00054 0.039 14.6 3.7 1 23 140 162 140 162 0.98
4 21 0.00027 0.019 15.5 1.0 1 23 168 190 168 190 0.98
5 21 0.00042 0.031 14.9 0.6 1 23 196 218 196 218 0.97
6 21 0.00014 0.01 16.4 5.4 1 23 229 251 229 251 0.97
7 21 1.7e-06 0.00012 22.5 1.1 1 23 260 282 260 282 0.98
8 21 5.7e-06 0.00042 20.8 1.1 1 23 288 310 288 310 0.98
9 21 4.7e-05 0.0034 17.9 5.3 1 23 316 338 316 338 0.98
10 21 6.1e-06 0.00044 20.7 3.8 1 23 344 366 344 366 0.98
11 21 6.7e-05 0.0049 17.4 0.7 2 23 435 456 434 456 0.96
12 21 0.058 4.2 8.2 0.2 1 23 471 493 471 493 0.98
13 21 0.21 16 6.4 3.6 1 23 499 522 499 522 0.96
14 21 1.5e-05 0.0011 19.5 1.3 1 23 528 550 528 550 0.97
15 21 0.0024 0.17 12.6 1.0 1 23 554 576 554 576 0.97
16 21 4e-06 0.0003 21.3 0.7 3 23 584 604 582 604 0.97
17 21 1.7e-05 0.0013 19.3 0.4 1 23 610 632 610 632 0.98
18 21 0.012 0.87 10.3 1.8 1 23 639 661 639 661 0.99
19 21 1.2e-06 8.8e-05 22.9 0.4 1 23 666 688 666 688 0.99
20 21 2.1e-05 0.0016 19.0 0.7 1 23 694 716 694 716 0.96
21 21 3.9e-07 2.8e-05 24.5 1.4 1 23 722 744 722 744 0.99

Sequence Information

Coding Sequence
ATGCTGCCGCAGGAGTGCGATGGCAGTGAAATGAGCGCAAAGGTATTTAGCGACAATACCGAAATCAGGCTGATTCCGCAGAACGTTGTCGGGGGGGTCGGGGTTGCGATTGGGGTCGGGATCGTCGAGGAGGGCATCTTCCAATGTACCATTTGCGGCGAGGGTTTTGTATCGAAGCAGGCGCAGGACGCGCACCTCAAGACTCAACACGAGGAGAAAATACTCGCGGTTGAAGTGGAAACCGATTGTGAAACCGAGGTAACTATAGGAGAGCAGATCAATGAGACTGTTGGAGTCGGAGTGGGAACCGGGATAGCGACTTCGGCTGGTGCTTATGCGTGCGAACACTGCGGTCGATCGTACACGACACCCTCGGTCCTCCGGAAGCATCAGCTGGTTCACACCGGTGAGAAGAGTCACACCTGCGAAACTTGCGGCTACGCGAGTGTCCATCGGCAGAATCTTTTGAGCCATCAGCGCCGCCACAACTTCGAGTATAAGTTCCATTGCGAGATATGCGGCACGGGATTCTACGCGAAGAGCAACTACCTGGAGCATCAATTGATGCACTCGAAGGAGAAGCCCTTTCAGTGCGAGATATGCAGCGCGACCTTCCGCTATCGTCAAGGACTCCGACTTCACGCCAAACTGCACCAGCCCGATTACGTGCCGCCTCAGAAGAAGCATCACTGCGAGCTCTGTAACAAGCGCTTCTCCAGGAAGCAGGTCCTCCTGGTGCACATGAAGACACACGGTACCTCGGGTAGTCAGAATGAATTCGTCTGTCACATATGCGGCAAGGCCGTATCCAGTAAGACCTACCTGACGGTGCACGTAAGGAAGCATACTGGCGAGAAGCCTCACGTCTGTGACCTCTGCGGCAAAGGATTCATCTCGCAGAATTACTTGAGCGTCCACAGGCGCACTCACACCGGCGAACGACCTCACAAGTGTACGCACTGCGAGAAACGATTCACGCAGAGGACCACTCTGGTAGTTCATCTGCGGGGCCACACTGGAGACAGGCCTTATCCTTGCACCTTCTGTCATAAATCTTTCGCTTCCAAGACTATGCTCAATTCTCATCTCAAGACGCACGCCAAGCAGAATGCTCGCGCACAGCAggagcagcaacagcagcaccaccaccatcagcagcagcagcagcagcagcagcaagaacagcagcaacaacagcagcagcagcagcagcaacaagaACTGCACCAACAACGTCACGATACCGTGACTGTCATATTGCGCGAGATTCGCAATTCTTTGCGAAAATCGGACAGCCGGCTCGTCTGCGACTTCTGTGACAGATCCTTTAGCGAGAGGGGCGAGCTGCACGCTCATCGTCGTGCTCACAAGCCAACCTACATCCCGGAGAACGGCCAAGAGCCGGCGATGTACGAGTGCGACTTCTGTGGCATGCGAATTCGCCTGAAGGACGTGTTTGCCGAACACAGGCGCATTCACACCGGCGAGGAGCCTTATCAGTGCCAGAGCTGCGAGCAGCGATTTGCTACGCATCAGAGACTCTACTATCACAGAATTCGCGATCACATCCAAGAGAAGCCCTTCTTTTGCAAGGTCTGTGGTAAAGCCTTCAAGCTTCGACAGTTCCTTAACGTTCACATGAAAATACACGACAAGGTTTTCATCTGCGACGTCTGCGGCGCTTCGACGGCTACGCTCTGCAATCTCGAGTATCACAAAAAGCGACACAATAAGGACTACGATCTCTTCTGTGAGATATGCACCAAGGGCTTCTACACAAGGGCCAGCCTTCAGCAGCACATGATGACGCACTCGGGCGAGAAGCCCTTCCCCTGTCCAACCTGCAGCTCCTCCTTCAGCAGTCGAGGCTACCTCAAACTGCACATGGCGACGCACGGAACGCGCGAGAAGAAGTACAAGTGCGAATTTTGTGATTTTCGGAGCTGCTGGCGCGGCGCTCTCAAGGTTCACATGCGAATTCATACTGGGGAGAATTACGAGTGTCACGTGTGCGGCAAGTCGGTGTCCAGTAAGGCCTACCTGGGCATCCACATGCGCATTCACACGGGCGAGAAGCCGCACGCTTGCGAGGTTTGCGGGAAGGCCTTCAGTGCCAGGAAGTACCTCAGGATTCATGGGCGCACGCATACTGGCGAGAAGCCTTACGAATGCTCTCTCTGCCAGAAGAGATTCACTCAAAAAGGAACGCTCACTGCTCACCTCAGGTCGCACCGGAAGGCCACCGATTGCATTCGCCTCGGCCGCGACGTGGTCGTTGCCGTTTGA
Protein Sequence
MLPQECDGSEMSAKVFSDNTEIRLIPQNVVGGVGVAIGVGIVEEGIFQCTICGEGFVSKQAQDAHLKTQHEEKILAVEVETDCETEVTIGEQINETVGVGVGTGIATSAGAYACEHCGRSYTTPSVLRKHQLVHTGEKSHTCETCGYASVHRQNLLSHQRRHNFEYKFHCEICGTGFYAKSNYLEHQLMHSKEKPFQCEICSATFRYRQGLRLHAKLHQPDYVPPQKKHHCELCNKRFSRKQVLLVHMKTHGTSGSQNEFVCHICGKAVSSKTYLTVHVRKHTGEKPHVCDLCGKGFISQNYLSVHRRTHTGERPHKCTHCEKRFTQRTTLVVHLRGHTGDRPYPCTFCHKSFASKTMLNSHLKTHAKQNARAQQEQQQQHHHHQQQQQQQQQEQQQQQQQQQQQQELHQQRHDTVTVILREIRNSLRKSDSRLVCDFCDRSFSERGELHAHRRAHKPTYIPENGQEPAMYECDFCGMRIRLKDVFAEHRRIHTGEEPYQCQSCEQRFATHQRLYYHRIRDHIQEKPFFCKVCGKAFKLRQFLNVHMKIHDKVFICDVCGASTATLCNLEYHKKRHNKDYDLFCEICTKGFYTRASLQQHMMTHSGEKPFPCPTCSSSFSSRGYLKLHMATHGTREKKYKCEFCDFRSCWRGALKVHMRIHTGENYECHVCGKSVSSKAYLGIHMRIHTGEKPHACEVCGKAFSARKYLRIHGRTHTGEKPYECSLCQKRFTQKGTLTAHLRSHRKATDCIRLGRDVVVAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00295431;
90% Identity
-
80% Identity
-