Basic Information

Insect: Pachycephus smyrnensis
Gene Symbol: SCRT1
Assembly: GCA_030142225.1
Location: JARQST010000301.1:1898031-1899442[+]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 9.3e-05 0.12 12.6 0.3 13 38 256 278 251 283 0.86

2 5 0.0036 4.5 7.5 0.9 17 28 291 302 281 317 0.78

3 5 0.11 1.4e+02 2.7 0.2 18 28 318 328 308 339 0.81

4 5 0.00023 0.29 11.4 0.4 19 41 347 366 335 368 0.88

5 5 0.048 61 3.9 3.4 14 43 370 396 365 397 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	9.3e-05	0.12	12.6	0.3	13	38	256	278	251	283	0.86
2	5	0.0036	4.5	7.5	0.9	17	28	291	302	281	317	0.78
3	5	0.11	1.4e+02	2.7	0.2	18	28	318	328	308	339	0.81
4	5	0.00023	0.29	11.4	0.4	19	41	347	366	335	368	0.88
5	5	0.048	61	3.9	3.4	14	43	370	396	365	397	0.88

Sequence Information

Coding Sequence: ATGAGAATTGGTGCAGTTATATCATATGAGGCCAATGTGGGGTGGTCTACTGCAGTGACCACCACGACCGATACAGCTGCCCCAATTCTAGCCTGGGATCCTACCTCGGTTTCAGGGTATACACACGAGACGTGGATCAACCACGAGGAACCGCCAAAATATGCTACCCTCCGCTCAGCCGCTGAACTTGCCAGTCCCGCCATGCCTCCTGCTTCTCCGTCGCATCAGCAACATCAGCAGCAACATCCGCATCAACATCAGCAGGATATCGGAGGTGCGGCCGCGCCCCTACAACCTACGGGGACGCTCACCCTACCGCCACGGAAGAGCCTCTCCATGTGCTTCACGAGTACAGGCACGGCCCTATCCTTACCGCCtaagaagaaagatatatatcgTCCCTATAGCCTGCAACCGGAAATACGTACACCGGCGGAAGAGGATCTATCGGCCGCTCAAGCGATTCTTGATCTAAGTGCATCACCAGCAGCTCCAACTCACTCGGTCTTCGTGCATACTCTATCGCCACCTCCGCAGCCACCGCAACCGGTACCGATACCGGTCTCTGTCCTGGTACCAGTACCCACCTCGCAGAGCCCACCGAGACAGGAACAAAGCGTCACGCCTCAACCTCAGTCACCGGAAACTGCCGAGGCCGGAAACAAAACAGTAGCCTATACCTACGAGGCCTTCTTCGTCTCGGATGGTCGCTCGAAACGTCGCTCTACCAATGCGGCTGTACCCGAGAAAGAAGCTGCTCAACCGGACAAGCCGAAGTTCACCTGCATCGAATGTGGCAAGCAATACGCGACCTCGTCCAACCTCTCACGACATAAACAGACACACCGCAGCCTGGATTCTCAATCGGCAAAGAAGTGCATCCACTGTGGTAAAGCATACGTCAGCATGCCTGCCCTGGCGATGCACGTACTCACCCACAAGCTAGCTCACAGCTGCGGCGTTTGCGGTAAGATGTTCTCCAGACCCTGGCTACTCCAAGGTCATCTTCGTAGTCATACAGGAGAGAAGCCTTACGGATGCGCACACTGCGGCAAGGCCTTCGCCGATCGTTCGAATCTTCGCGCCCACATGCAGACCCATTCGGCTGATAAAAATTACGAGTGCTCGCGCTGTCACAAAACGTTCGCGCTCAAGTCCTATCTGAACAAGCACTTGGAGTCCGCTTGTCTCCGCGACGAGGAACTGCAGACCTCAGCATCGCCACCCGGAAGTGCGAGTGCGATACCCGACGGTGGTCCGATGCAACCGAGCTGCGGCTTGTAG
Protein Sequence: MRIGAVISYEANVGWSTAVTTTTDTAAPILAWDPTSVSGYTHETWINHEEPPKYATLRSAAELASPAMPPASPSHQQHQQQHPHQHQQDIGGAAAPLQPTGTLTLPPRKSLSMCFTSTGTALSLPPKKKDIYRPYSLQPEIRTPAEEDLSAAQAILDLSASPAAPTHSVFVHTLSPPPQPPQPVPIPVSVLVPVPTSQSPPRQEQSVTPQPQSPETAEAGNKTVAYTYEAFFVSDGRSKRRSTNAAVPEKEAAQPDKPKFTCIECGKQYATSSNLSRHKQTHRSLDSQSAKKCIHCGKAYVSMPALAMHVLTHKLAHSCGVCGKMFSRPWLLQGHLRSHTGEKPYGCAHCGKAFADRSNLRAHMQTHSADKNYECSRCHKTFALKSYLNKHLESACLRDEELQTSASPPGSASAIPDGGPMQPSCGL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00255244;
90% Identity: iTF_01198823;
80% Identity: iTF_01131097;