Psmy007704.1
Basic Information
- Insect
- Pachycephus smyrnensis
- Gene Symbol
- bab1
- Assembly
- GCA_030142225.1
- Location
- JARQST010000394.1:267645-269257[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.9e-15 5.9e-12 45.3 0.1 3 45 344 386 342 386 0.92
Sequence Information
- Coding Sequence
- ATGGGGACTGCATCTCAACAATACTGCCTCCGCTGGAACAATCATCGTTCAAACTTGCTCACCGTCTTCGATGAGCTTCTGCAGAACGAAGCGTTCACGGACGTGACCCTGGCCGTGGACGGTGGCGCGTCCGTAAAATGTCACAAGATGGTGCTAGCAGCCTGCTCCAGCTACTTCCAGACGCTCTTCCTCGACCTGCCCTGCAAGCATCCAATAGTCGTCCTGAAGGACGTGAAGTATGCGGAGATCAAGGCAATCCTGGAGTACATGTACCGGGGTGAGGTGAACGTGGCGCAGGAGCAGCTAGGGGGTCTGTTGAAGGTAGCCGAGGTGCTGAAGGTGAAGGGTCTCGTGGAGGAGAATGGCTCTCAAGGACGTCGGGAGGAGGGTGAGACGTCGCAGTCGCCACCGCCAGCCATCTCCACGAGTACGACGAGTAGCGCGGCTCACAGTTCCGGACACATTTCGCCGCCACACTCGACGGGAACGCCGTACAATTTGTATGGAAAGTCTCCAGTAGATCGGGCCCAGGGTAGGCTCTCGTTACCCATGTGGGCACTGTCAGGATTGCCCCTGCCCCAGCATCCCGCATCTGGTCATCAGCCTCCACATCACGCCCAGCACTCGGCCATGCTTGGTGGATCCTACGACAACGGCTCGGACACCTCACCActcaaaagaaagaagctcTCGAATCTACTTATGAATCGAGACACTCCCATCCTGAGAACCGTTCTCGGACAAGGTCACGCCGACAGCTCTCAGGGCATTCCTCTTCTGCATCCCGACAGCCACGAGACGCACTTTAGATCTCACAGCAATGGATCGGCCAACGAGGTCGATCGTAGGAACTCCACGGAGCTCTCTCACGGGGAAGCCGTTCACAGTCCTTATACTGACATCTCGATGATGGACGAGGACGAGAAGCAACCATCGCCGCAGTCCTATGCAGGGGATACCAAGTCCGGTATAGTAAACTACGTACCGACGCAGAAGCCTGAGTGGAAGCGTTACAAGCAGTACACCAGGAACGACATAATGTCCGCAATAGAAGCTGTCAGGTCGGGAATGAGTGCCTTGCAAGCAGCACGAAAGTACGGAGTGCCCTCGCGCACTCTTTACGATAAGGTTAAGAAATTGGGTATCACGACGTCCAGGCCGTTCAAGAGAAGCTCGAATGGCAGTGGTGCGTGTTTCCCTTATGGGATCGGAGGCAACGCCAATGGGGGAATCTATGGTGGTCTATCCGAGTCCGAGAACGAGAACAGTGGCGCATTGATCGAGCCAGCAGCCGTTCTGGAAACGAGTTTTGGCAAGGAACGCGATCCGGTCGACATGGCGCGATGCAGTCCCAGTCCGGCTGTACTCTCCGTATCGAAACAGCCCCAGGTCGAAGATCAAGTGGAGGACCTATCCGTCGGCAGGAAGCCTGAATTACGCGTCATCGTACCGCCGGCTTCTTCCATCGTCAAGGAGGAAGAACCGGATGCGCCTGATAACTCCGGACGCAACTGA
- Protein Sequence
- MGTASQQYCLRWNNHRSNLLTVFDELLQNEAFTDVTLAVDGGASVKCHKMVLAACSSYFQTLFLDLPCKHPIVVLKDVKYAEIKAILEYMYRGEVNVAQEQLGGLLKVAEVLKVKGLVEENGSQGRREEGETSQSPPPAISTSTTSSAAHSSGHISPPHSTGTPYNLYGKSPVDRAQGRLSLPMWALSGLPLPQHPASGHQPPHHAQHSAMLGGSYDNGSDTSPLKRKKLSNLLMNRDTPILRTVLGQGHADSSQGIPLLHPDSHETHFRSHSNGSANEVDRRNSTELSHGEAVHSPYTDISMMDEDEKQPSPQSYAGDTKSGIVNYVPTQKPEWKRYKQYTRNDIMSAIEAVRSGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFKRSSNGSGACFPYGIGGNANGGIYGGLSESENENSGALIEPAAVLETSFGKERDPVDMARCSPSPAVLSVSKQPQVEDQVEDLSVGRKPELRVIVPPASSIVKEEEPDAPDNSGRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01538079;
- 90% Identity
- iTF_01395220;
- 80% Identity
- iTF_01130926;