Basic Information

Insect: Pachycephus smyrnensis
Gene Symbol: ct
Assembly: GCA_030142225.1
Location: JARQST010000572.1:964396-982012[+]

Transcription Factor Domain

TF Family: CUT
Domain: Homeobox|CUT
PFAM: PF02376
TF Group: Helix-turn-helix
Description: The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 1.4e-27 5.5e-24 84.1 0.0 2 72 436 507 435 512 0.95

2 3 2.4e-32 9.7e-29 99.4 0.0 2 77 844 920 843 922 0.96

3 3 1.3e-30 5.4e-27 93.8 0.0 3 75 1071 1144 1069 1148 0.95

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	1.4e-27	5.5e-24	84.1	2	72	436	507	435	512	0.95
2	3	2.4e-32	9.7e-29	99.4	2	77	844	920	843	922	0.96
3	3	1.3e-30	5.4e-27	93.8	3	75	1071	1144	1069	1148	0.95

Sequence Information

Coding Sequence: ATGGAAAAGCAACCCTACGCAATAACATTACTCCCACAAAGAGATGCAAAGCTGCCCTTTATGGCCAGCTTGCCTGTCGATTCGGCCCTCGAGGATTCCCGGCTAACTGGCGCTACTGGAGCAGTGTATatcGGACAACTCGCCGAGGAAGTGTCGAGGCTTCAGCAGAGTCTTCAGCGACTCCAGGAGACGAGCGCCCAAGCGACGGCCCGTCTCGAGGAGGAACTCGAGGCCAGAAGACAACACATAAACAGACTGGAGAGTAAACTCGAGAGGCAACGGGATTACGAAGATCTCAAACGTGAAATCAGCGTTCTGAGGTCTGTCGACCTGTCGCAAATCCCGACCGGGGAACCCGGCAAGAGTCTCGAACATCTCCTGATGGAACGTTCGAAGGCTCTGCAGCAGGCGGAAATCCTCAAGCCACCGAGCACACCGGATGCTCTCGGTGGATTGTCGTCACCCCTGCAGCGCGCCGCGACCGCCTCACCCCACGGCGGCACTGCGCCATCCACCCTCGTATCCCAAGCACTCCCGAACCGCTCTACCCCAACACCCTCGTCAGCCACCTCGACGAGTTCGAGTCTCCTTTTCCCGCCACCTCTCCAAAACGTCGAGACGTTCGGCTCGTTCCTCGGCGAGGAGATCGTCGCCAACTGGAGGCGCTCCCTGGAGAGGTCGATCATGAGCCAGCAGCAACCCCAAGTGCAATCCCAAAGTCAGCAGCAGCCCGTCGCTGCCTTACACCCGCCGACAACACCGAGTCTAAACCACCTTCCGTCGCCAACAGATCCGACGTCAAGCTCGACGCCGGCCAAGTCGAGCACACCCCTAGGAAGTGGTCCGGACGCCTCGGAGAAAGCACCGACGCCGATCTCGGGACACGAAACACCAGCGCCGCCAACACCCTCCTCGACCACGGCCCTCACGTCGCCATCGGCTCTGCAACCGCCACACGAACCCCCGGTCAACGGGGCGCCGCCACCAAAGAGTCCCGCCGAGGAATCCTGTCAccacaacaacaataacaactcTCATCACCTGACCAACAATAACATCGGAAGTGCCGGTATCGGgggaggtggaggtggtggcggtggaggaGGTGGTACCGGTGGCCTCAGCGTACTGGACACCCTCAAGAGTCCCTTTCGTTTCGACGACCGGACGCATCCATTCCGATTTGGGGACGAATTCGGCGCCGCCGGTATGGCCGGTCGTCTCGGCGAATCGCTCATACCTAAGGGCGATCCCATGGAGGCACGACTCCAGGAGATGCTGCGGTACAACATGGACAAGTACGCCTCGCAAAATCTCGACACGCTACACATTGCCAGGAGAGTCCGGGAGCTTCTCTCGATACACAACATTGGCCAGAGACTCTTTGCCAAGTACGTGCTTGGCCTAAGCCAGGGCACCGTTAGCGAGCTTCTCAGCAAGCCCAAACCCTGGGACAAACTGACTGAGAAGGGTCGCGACAGCTATCGCAAGATGCACGGCTGGGCTTGCGATGACAACGCTGTTATGCTGCTCAAGTCTCTCATACCCAAGAAAGAGTATGTTTCAGGCAAGGAGCAGGGAATGCCGGCGTTCGCCAGAGGTCCTCAGGACGGTTGTCCACCTGATATGAGCGACGAGAGACTGGCCCACATCCTCTCAGAATCAGGACATCTGCAGATGAGAGGAGAGCATGAAATGTCGAATGACGCCGACAGCAAGAGTCCCAGTAGGGTCGGTTGTCCAAGTCCCTTCGGCAAGGATCGGCTGGACAGCCAAAACAGGAGACTGAAGAAGTACGAGAACGATGACATTCCCCAGGAGAAGGTTGTGAGGATCTACCAGGAGGAGCTGGCAAAGCTCATGGGAAGAAGGGTCGATGATTTAAGAGGACCTCGAGAATTTCCACCGAGCGCGATGTTTCCTCACTTTTTCAGTGGCGCCCAGGGCCTCCAGGGTATGGAGAGGACCCAGGAGGAGATAAGACTGGCGCTGGACGCTTATCATCGCGAACTTCAAAAGTTGAACACGGCGCCAGGGCAGAATCCAGCATTAGCAGGACTTCCAGGACTTCCAGGATTGCCAGGATTGCTAGCACTGCAACAGCAGGCTCTTCAGCAGCATCATCTGGCCGCGAACGGCGGCGGCGTTCAAGATCTTAGTCTGGGTAAGGTCGACCCCAGGAACAAGATGATGAACGGAGTGTctgaggaggaaaaagaaaagatggaaGAAGCTATGAGGCACGCCGGAAGTGCTTTCTCCCTGGTTAGACCCAAACAGGAACCCAGCGGGCCCCAATCTACCCCTGGTGGTTCTAGTGCCAGTTCACCCCTTGGCAATTCCATACTTCCACCTGCCATGACGCCCAGTGAAGAATTCTCAGGAGCAGCGGCTGCGAGTCCACTCCAGAGGATGGCCTCCATTACAAACAGTCTGATCAGCCAACCGTCCACACCGACTCATCATTCAGCCAATCAACGCCCACTAAAGGCAGTCCTTCCACCAATAACACAGCAGCAGTTCGATATGTACAACAACCTCAACACAGAAGACATTGTCAAGAGGGTAAAGGAACAGCTCTCGCAGTACTCAATTTCTCAACGCCTGTTCGGCGAGTCCGTCCTGGGTCTGTCTCAGGGCTCGGTCTCTGATCTTCTGGCGCGTCCTAAGCCCTGGCACATGCTCACGCAGAAGGGTCGGGAGCCTTTCATTCGTATGAAGATGTTCCTCGAGGATGACAACGCTGTACACAAACTCGTTGCCAGCCAGTATAAGATCGCCCCGGAGAAGCTCATGAGGACCGGCGGCTACGGCGGCCTGCCTCGTAAGTTTAACTCAGcTTGTGGAACACCCATGAAACCGATGCCCCCGACGAAGTTGGTCCAAGAACAGCTTCAAAATGCTGCCAAGGCACAGGCGGCAGCGCAGGCTGCGGCACAGGCTGCTGCTCAGCATCAGCAGGAGAACCAGATGCAGCTCGGACCACCTCAACAGAGTCCGCAGCATCCCCAGCATCCTCAGCCACCTCCACCAATGATGCTCACTCCCCCTGGACCTCATCATCCACACGGGCAGATAAGCATGCAAGAACTACAAAAGAAACAGCAACAGATGAGTCTTCACTCTCCACATCATCAGATGACACCATCGCCACTTCGCAGCTTGCATCCTCACATCTCTCCGAGTGTTTACGAGATGGCTGCCCTTACCCAGGATCTGGATACGCAGACCATCACGACGAAGATTAAGGAGGCACTTCTCGCGAATAATATCGGACAAAAAATATTCGGTGAGGCCGTTCTGGGCCTTTCACAAGGATCCGTCAGTGAGTTACTGAGCAAACCTAAGCCTTGGCATATGCTGAGTATCAAGGGTCGGGAACCCTTCATCAGGATGCAACTCTGGCTCTCGGATGCACATAACGTAGATAGACTGCAGGCTTTGAAGAACGAGAGAAGGGAAGCTAACAAAAGACGGCGCAGCAGTGGTCCCGGACACGATAACAGTTCGGATACCTCGAGTAACGACACAGCTGAGTTCTACCACGCAGCATCCCCAGGTCCTGGACCGGCATCAGCCAAAAAACAAAGGGTCCTCTTCTCTGAGGAACAGAAGGAGGCGCTGAGACTGGCATTCGCTCTTGATCCTTATCCCAACGTCGCCACGATAGAGTTCCTGGCAGGTGAATTAGCCCTATCATCCAGAACGATAACGAACTGGTTTCACAATCATAGGATGAGATTGAAACAGCAAGCGCCACACGGGCAACCAGAGCCTCAATCGCCTCGGGAACCTGGACAGCCCTTTGACCCGGTTCAATTCAGACTGCTTCTAAACCAAAGATTACTGGAAATCCAGAAGGAGAGGTTGGGTCTGGGTAACGTGCCCATCCCTTACTCGCCATACTTCAACCCTAATCTAGCCGCTCTAGTTGGCAACGCTCTTAAGGAGCAATGCTCGGGTCTGGACCTCTCAATGGGAACCCTTAAAAGGGAGCCTAATCAAGAATTTGAGGACGAAGATGCTGAAGACGCCATGAGCAATCTAGGTAGCGAAGACTCGGACGGTTCGGCTGGTAGCATAAAACGAGAACCAACGGAGACCCCGGCGCCGACGACTGCCAGATCAAATCGGAGAAAACCTGCAGCGCCTCAATGGGTCAATCCCGAGTGGCAAGAGCCAGCGAGAACCGGTGACGAGGTCATCATCAACGGAGTCTGCGTCATGCAGACCGACGACTATGGCGTCAAGAGAGAAGCTGAAGAGACAGTCAGAGTGGAACCAACGCCAGTTCAAGACAGATACGACGAGGACGCCCAGAGTGACGTATCCTCCGTGTCCGGGAACAATGGTCAGGATAGGGACAGTCCCATGCCAAGTCTAAAATCAGGACAGAACAGTCCAGCAACCTCGCCGAGGCCGCCATCCGTACAGCAGACACAACAGTTGACGGAGGAGAGTCCGAAGGACGTAGTGAAACACGAACCCGAAGAAACGGCCTGGGATTACTAA
Protein Sequence: MEKQPYAITLLPQRDAKLPFMASLPVDSALEDSRLTGATGAVYIGQLAEEVSRLQQSLQRLQETSAQATARLEEELEARRQHINRLESKLERQRDYEDLKREISVLRSVDLSQIPTGEPGKSLEHLLMERSKALQQAEILKPPSTPDALGGLSSPLQRAATASPHGGTAPSTLVSQALPNRSTPTPSSATSTSSSLLFPPPLQNVETFGSFLGEEIVANWRRSLERSIMSQQQPQVQSQSQQQPVAALHPPTTPSLNHLPSPTDPTSSSTPAKSSTPLGSGPDASEKAPTPISGHETPAPPTPSSTTALTSPSALQPPHEPPVNGAPPPKSPAEESCHHNNNNNSHHLTNNNIGSAGIGGGGGGGGGGGGTGGLSVLDTLKSPFRFDDRTHPFRFGDEFGAAGMAGRLGESLIPKGDPMEARLQEMLRYNMDKYASQNLDTLHIARRVRELLSIHNIGQRLFAKYVLGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHGWACDDNAVMLLKSLIPKKEYVSGKEQGMPAFARGPQDGCPPDMSDERLAHILSESGHLQMRGEHEMSNDADSKSPSRVGCPSPFGKDRLDSQNRRLKKYENDDIPQEKVVRIYQEELAKLMGRRVDDLRGPREFPPSAMFPHFFSGAQGLQGMERTQEEIRLALDAYHRELQKLNTAPGQNPALAGLPGLPGLPGLLALQQQALQQHHLAANGGGVQDLSLGKVDPRNKMMNGVSEEEKEKMEEAMRHAGSAFSLVRPKQEPSGPQSTPGGSSASSPLGNSILPPAMTPSEEFSGAAAASPLQRMASITNSLISQPSTPTHHSANQRPLKAVLPPITQQQFDMYNNLNTEDIVKRVKEQLSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDDNAVHKLVASQYKIAPEKLMRTGGYGGLPRKFNSACGTPMKPMPPTKLVQEQLQNAAKAQAAAQAAAQAAAQHQQENQMQLGPPQQSPQHPQHPQPPPPMMLTPPGPHHPHGQISMQELQKKQQQMSLHSPHHQMTPSPLRSLHPHISPSVYEMAALTQDLDTQTITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDAHNVDRLQALKNERREANKRRRSSGPGHDNSSDTSSNDTAEFYHAASPGPGPASAKKQRVLFSEEQKEALRLAFALDPYPNVATIEFLAGELALSSRTITNWFHNHRMRLKQQAPHGQPEPQSPREPGQPFDPVQFRLLLNQRLLEIQKERLGLGNVPIPYSPYFNPNLAALVGNALKEQCSGLDLSMGTLKREPNQEFEDEDAEDAMSNLGSEDSDGSAGSIKREPTETPAPTTARSNRRKPAAPQWVNPEWQEPARTGDEVIINGVCVMQTDDYGVKREAEETVRVEPTPVQDRYDEDAQSDVSSVSGNNGQDRDSPMPSLKSGQNSPATSPRPPSVQQTQQLTEESPKDVVKHEPEETAWDY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01394913;
90% Identity: iTF_01475233;
80% Identity: iTF_01130708;