Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 3.1e-07 0.0047 17.6 11.3 1 19 26 48 25 48 0.88

2 11 1.8 2.7e+04 -4.0 0.9 1 4 57 59 57 60 0.79

3 11 0.83 1.3e+04 -2.9 2.2 6 10 78 82 78 82 0.94

4 11 0.00055 8.3 7.3 7.4 1 11 88 98 88 99 0.95

5 11 0.01 1.5e+02 3.2 0.6 4 10 103 109 102 109 0.92

6 11 5.7e-07 0.0087 16.8 14.0 3 19 117 133 115 133 0.92

7 11 2 3e+04 -6.3 8.3 10 18 162 172 160 173 0.57

8 11 3.1e-05 0.46 11.3 8.0 10 18 180 188 178 189 0.93

9 11 0.53 8.1e+03 -2.3 0.5 8 11 194 197 193 200 0.72

10 11 1 1.5e+04 -3.1 0.8 15 18 215 219 214 220 0.54

11 11 1.8e-09 2.8e-05 24.8 11.3 1 16 225 240 225 241 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	3.1e-07	0.0047	17.6	11.3	1	19	26	48	25	48	0.88
2	11	1.8	2.7e+04	-4.0	0.9	1	4	57	59	57	60	0.79
3	11	0.83	1.3e+04	-2.9	2.2	6	10	78	82	78	82	0.94
4	11	0.00055	8.3	7.3	7.4	1	11	88	98	88	99	0.95
5	11	0.01	1.5e+02	3.2	0.6	4	10	103	109	102	109	0.92
6	11	5.7e-07	0.0087	16.8	14.0	3	19	117	133	115	133	0.92
7	11	2	3e+04	-6.3	8.3	10	18	162	172	160	173	0.57
8	11	3.1e-05	0.46	11.3	8.0	10	18	180	188	178	189	0.93
9	11	0.53	8.1e+03	-2.3	0.5	8	11	194	197	193	200	0.72
10	11	1	1.5e+04	-3.1	0.8	15	18	215	219	214	220	0.54
11	11	1.8e-09	2.8e-05	24.8	11.3	1	16	225	240	225	241	0.96

Coding Sequence: atTGAAAAGGGTCAGCGGAAGACATGCAGTGACCCAATTCCTCTATGTGGTAACATCTGTGCAAAACCTTTACCATGTGGGCCAGAAGGAGACAAGCACTTTTGCAAACAGTTGTGTCATGAGGGCGCATGCGCAACGTGTCCTGATAAGACTTTATTACCATGCCGTTGTGGTCACTCCAGTCGGGAAGTGCCCTGCTCTGAATTGTCAGAAAATATCAACAATGTATTATGTCAGAAGAAATGTAACaagAAACTGTCTTGTGGCCGCCACCGCTGTCGCACGGTTTGCTGCGCTGCCCAGTCCCATCGCTGCGCTGTGGTGTGTGGGCGCACGCTTTCTTGTCAATTGCATCGCTGCGAGGAGTTCTGTCACACTGGCCACTGTGCTCCTTGTCCACGCGTCAGCTTCGAAGAGCTCCATTGCGAGTGTGGCACCGAGGTCCTTCTCCCTCCAGTACGCTGTGGCAGCCGACCGCCAGTATGCCACGCGCCGTGCCAGCGCGAGCGTCCATGCCATCACCCGCCGCACCACTCCTGCCACACCGGCGACTGCCCGCCTTGTGTTGTGCTCACCACCAAAATGTGTCATGGACAACACGAGGAGCGAAAAACAATACCTTGTTCTCAAGAAGAGTTCTCATGCGGCCTACCGTGTGGAAAACCTTTATCATGCGGAAAGCATACATGCACGAAAACATGCCATAAAGGCCCTTGCGATACTGAAAAGTAA
Protein Sequence: IEKGQRKTCSDPIPLCGNICAKPLPCGPEGDKHFCKQLCHEGACATCPDKTLLPCRCGHSSREVPCSELSENINNVLCQKKCNKKLSCGRHRCRTVCCAAQSHRCAVVCGRTLSCQLHRCEEFCHTGHCAPCPRVSFEELHCECGTEVLLPPVRCGSRPPVCHAPCQRERPCHHPPHHSCHTGDCPPCVVLTTKMCHGQHEERKTIPCSQEEFSCGLPCGKPLSCGKHTCTKTCHKGPCDTEK

Sequence clustering based on sequence similarity using MMseqs2