Basic Information

Insect: Pachliopta kotzebuea
Gene Symbol: -
Assembly: GCA_018246255.1
Location: DWLS01004311.1:1-1517[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1 90 4.6 0.9 2 23 11 35 10 35 0.89

2 9 1.1 96 4.5 1.4 2 23 83 104 82 104 0.92

3 9 0.23 21 6.6 0.3 6 23 116 133 116 133 0.97

4 9 0.0083 0.75 11.1 0.3 2 23 141 163 141 163 0.96

5 9 4.5e-08 4.1e-06 27.7 0.7 2 23 190 211 190 211 0.97

6 9 6.5e-06 0.00059 20.9 2.1 1 23 218 241 218 241 0.97

7 9 0.0014 0.13 13.5 0.2 1 23 247 269 247 269 0.95

8 9 0.0023 0.21 12.9 0.8 1 23 275 297 275 297 0.96

9 9 6.8e-06 0.00061 20.8 6.0 1 23 303 325 303 325 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1	90	4.6	0.9	2	23	11	35	10	35	0.89
2	9	1.1	96	4.5	1.4	2	23	83	104	82	104	0.92
3	9	0.23	21	6.6	0.3	6	23	116	133	116	133	0.97
4	9	0.0083	0.75	11.1	0.3	2	23	141	163	141	163	0.96
5	9	4.5e-08	4.1e-06	27.7	0.7	2	23	190	211	190	211	0.97
6	9	6.5e-06	0.00059	20.9	2.1	1	23	218	241	218	241	0.97
7	9	0.0014	0.13	13.5	0.2	1	23	247	269	247	269	0.95
8	9	0.0023	0.21	12.9	0.8	1	23	275	297	275	297	0.96
9	9	6.8e-06	0.00061	20.8	6.0	1	23	303	325	303	325	0.99

Sequence Information

Coding Sequence: ATAGATTCGGAGAATTCTTCTTTGGAGTTTCTATGTGAAAAATGTAGCGATCTGTTACCATTTTCTACAATGGAAAACTTTATTGAACATCTACACTCGCAACACAATCACGAATTCCATCAGAAAACATCAACGGAAACATTTATAAGAGATAATGTATCTGTTGTAGAAATGTTAGCCACCGATGAGCAATTTACTGACAGTGAGCAAGACAAAGATATAACAACTGTTAAACTGCAACGAATACAATGTCCATTTTGTGAGAGTGCATTTTCTTCAATCACTCGTCTCACTTGCCATTTGAATCAGCATGTCAATATTTGCATTGAGGATGGTTTCACTTGTTGCAACATGACTTATTACAATACCAAATCCTTGACAATCCATCTGCAAGACCATAATTCAATAAATGACACAAATACTTGCCAAAGTTGTGGATTCAATGCTAGTAATGCAGATGATCTTCAGGAACATATATCTAAAAAACATGGAAGAgaggaaacttacataaaacaaacgGAAGAGAGATTACAGAAGGGTGATAAATGCCAAAAATACATACCGGCTGTGTGTCCAGAATGTAACAAAACTTTCTCGAACAAATACAACATGCTAGTTCATATGAGAAGCCATAGAAATGTTGAAGAGAAATTTTCGTGCGATAGGTGTAGTAAAAGCTACAAGAGCCAAGGGAGTCTCAGAAATCATCAAAAAGTTACTCATGAGGGCATACTAAGCTTTGTTTGTTCACATTGCGGTGAAGCCTTCCCCACGCGCGTTGCACGCGACGTACATAACAGGATACACACCGGAGACAGGCCGTACACGTGCATCTATTGCCAGAAATCCTATCGCGCGAAGAACACGCTTGACCGTCACATCGAAATCCATCTCGACATTAGAAAATACGAATGTAAAATATGTTCAAAAAAATTCAGGAAGAGCACACACCTCAACTACCATTTAAAAACGCACAGGAGGAAGAAGTAA
Protein Sequence: IDSENSSLEFLCEKCSDLLPFSTMENFIEHLHSQHNHEFHQKTSTETFIRDNVSVVEMLATDEQFTDSEQDKDITTVKLQRIQCPFCESAFSSITRLTCHLNQHVNICIEDGFTCCNMTYYNTKSLTIHLQDHNSINDTNTCQSCGFNASNADDLQEHISKKHGREETYIKQTEERLQKGDKCQKYIPAVCPECNKTFSNKYNMLVHMRSHRNVEEKFSCDRCSKSYKSQGSLRNHQKVTHEGILSFVCSHCGEAFPTRVARDVHNRIHTGDRPYTCIYCQKSYRAKNTLDRHIEIHLDIRKYECKICSKKFRKSTHLNYHLKTHRRKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01130289;
90% Identity: iTF_01130289;
80% Identity: iTF_01130289;