Pkot005217.1
Basic Information
- Insect
- Pachliopta kotzebuea
- Gene Symbol
- -
- Assembly
- GCA_018246255.1
- Location
- DWLS01002462.1:7070-11361[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 7.7e-05 0.0069 17.5 0.5 1 23 307 329 307 329 0.97 2 11 3.6 3.2e+02 2.8 2.0 2 19 343 360 342 364 0.91 3 11 1.7e-05 0.0015 19.6 0.6 2 23 370 391 369 391 0.97 4 11 9.3e-05 0.0084 17.2 1.2 1 23 395 418 395 418 0.94 5 11 0.022 2 9.8 3.9 1 23 421 443 421 443 0.99 6 11 8.4e-05 0.0076 17.4 0.4 2 23 633 654 632 654 0.96 7 11 0.004 0.36 12.1 0.6 2 23 674 696 673 696 0.97 8 11 4.2e-07 3.8e-05 24.6 2.0 1 23 702 724 702 724 0.98 9 11 0.00089 0.081 14.1 2.5 1 23 729 751 729 751 0.97 10 11 0.0035 0.32 12.3 2.3 2 21 758 777 757 780 0.93 11 11 0.62 56 5.2 0.7 5 19 822 836 819 841 0.87
Sequence Information
- Coding Sequence
- atgaaGTTTAACGATTTCGTGTGGGACTCGGACATGGTGTATCCGGTGTTGTTCCTACCGAAGAAATGCGCGTCGATAGCGCAAAACTATAAGTCCAGCGACGACATATTTGTGCTCCTAAGCATCAGGTCCATGGATGTGGAGGATAAGGAGACAAATCTTTACTCCGGCTTCTGTAACATCAAGTTAATCGGACGCTGCAAGGTTCGCGTGCACGACATTCAGCCGCTGTTGACGCCGGATCCCAAAAGTTTGCATCACGTCGAGGTGTTATCGGATCAACCCACTGAGGAACATTCATTATACCCGTACACCCAGTCGCAAGTGTGGATAGACCCTTTGCGGAGTCCGTTCATTTACAACGATTATAAAACGACTGGATCGCAGGGCAAGGATTCTAGCCATCCAATCCAAAGCCATCCATACCAAAGCAAATCCAAACATATAACCTTCAACcaacataatacatatataacacaaaatgtgtacaattgtATGGAACCATTTGATGAACTGGACAATGATCAGATTAAGAGGGTCCCACCCGCCAGTGAGGTGACGGAGCTGAGCGCTTCCGACGACCCTGATCTTAGCAATTTATATGAAGATGATGACTTCGAGTACGAGATCCTCCTGTCGCAGCTGCCCGAGGACATAAatgaaaagataataaatgacGCTGAGGTGATCGATCAAGCAGAATTAGAAGATGAGGACGATGCTTTAAGGCAACTCCTGCCGCTGGAGACACAGTCGACGTCCAAGCAGCAAAGGACATTGCTGTTTGAGGACAACGATCCCATCTTTGGACTGGCTGACGAGAGGATCGCTGCCGAGGATCAATCAGTTGAGTGCAGGGAGAAAGACTTAGAACCTGAAGCAACCATCGaGAAGAAAAAGAGTTCAACATTGAAAGAGtatgaatgtaataaatgtacgCAAACATTCGAACAATTGGCCTCTTTAAAGCAACACGTGGCGAGCCACCGAAACACGGCCGTGGTCATAGAAGACAAAACCAACTTGACTTGCACCCTCTGCAACAAAAAGATGAAAACACGGGAGAAGTACGAAATACACTGCGCCGGCCATGGAGACCCGGAGGTGGAGTGCGACATATGCTACAAGGTTTTCGCGACCAAGTTCAGCCTGCGCACCCACCGCAAGATACACATGAGGAAGTATCCATGCGATCTCTGCACGAAATCGTTTTCAAAGCAGGTGGAATTGAAGACCCACTTCGCCAAGACACATTCGGTGTACACTTGTGACTTGTGCCAATACACCACCCACGAACAGAAGGAGTTCAAGATCCACCAGAACACTCACGTGGGTTTCCAGGAGGGCGATGAACAAGAAACTGACGCCCCTTCcgacaaaacaaacaataccATAAGCGCAAACAACGAGATCTACGTAAACGATGAGATTCGCGATAACGATGAGATCTACGCAAACGATGAGATCTACGCAAACGATGAGATCTACGCAAACGATGAGATCTACGCAAACGATGAGATATACGGAAGCGATGAACTCCGAGCTAACCATGAGATCTACGGAAGTGATGAGATCCGAGCTAACGACGAGATCTACGCAAACGATGAGATCCACGCAAACGATGATATCTACTTAAACGATGAGATTCGTGCAAACGATGAAATCTGTGCAAAGGATGAGATCGGCACAGTCAATGAGATCTCCGCAAAATATGAGATCTGTGCAAACGATGCATTCGAAAAATATAGAAAGGATAAAGtgcaaaaaaaatcaagaaaaaACGTGTTCGATGATGACAGCCTGCGTGATGCGGACATGGTGATCGCTAAAATATTGtccaataaatgttttctacTCCACTCGAAGTTGGCTAGAAAAGACAAGAAATTTAGCAAGaCTTGCGACGTCTGCTCAAAATCGTTCGACCGTATTGGAGACCTGAAGCGGCATCTCATAGAGCACGTCGTCTACAGCACCCTAGCCAAAAATCCGGTAGACGAAAACGGCTCCCTGTGCATCCAGTGCGAGGTCTGCGGGGAGAAGACCTTCTCTAAAACTGATAAATACAAGGAGCACCTGCGCGAGCACGCCAAGCTGACACTGTACCAGTGCGCCATATGCAACAAGTCGTTCAGCGACTCCAGCAACTTCTCGAAGCACAAAAAAATCCACGGCTCCCAATATTTCCAGTGCGACCTCTGCCAGAGGAAGTTCAACTCGAAGAAGATGATCACGCAGCACATGGACTATCACAACAAGAACCCGCCGCAGGAGTGCTCCTTCTGCGACAAAGTGTTCTACTTCGAGTCGATGCTGAACAAGCACGTCAAGTGCGCGCACATCAAGGAGACCTCAGCGCGCTTCCGCTGCCGATTCTGCCACCAGTATTACAAAAGCCTGAAGGAGAAGTGGGACCATGAGTGGTATGTTCACAAGGTGAGGAAGGTCGTCGCTGATTGCATAGTCTGCGACGCGAAGTTCAGGAAGTACGCGGAGTTGAAGAGACACTGCAACGCGATCCACAAACTGAACTTACCCAGCGCTAAGTACTTCGGGGAAATGAAGCGCGAACTTTGA
- Protein Sequence
- MKFNDFVWDSDMVYPVLFLPKKCASIAQNYKSSDDIFVLLSIRSMDVEDKETNLYSGFCNIKLIGRCKVRVHDIQPLLTPDPKSLHHVEVLSDQPTEEHSLYPYTQSQVWIDPLRSPFIYNDYKTTGSQGKDSSHPIQSHPYQSKSKHITFNQHNTYITQNVYNCMEPFDELDNDQIKRVPPASEVTELSASDDPDLSNLYEDDDFEYEILLSQLPEDINEKIINDAEVIDQAELEDEDDALRQLLPLETQSTSKQQRTLLFEDNDPIFGLADERIAAEDQSVECREKDLEPEATIEKKKSSTLKEYECNKCTQTFEQLASLKQHVASHRNTAVVIEDKTNLTCTLCNKKMKTREKYEIHCAGHGDPEVECDICYKVFATKFSLRTHRKIHMRKYPCDLCTKSFSKQVELKTHFAKTHSVYTCDLCQYTTHEQKEFKIHQNTHVGFQEGDEQETDAPSDKTNNTISANNEIYVNDEIRDNDEIYANDEIYANDEIYANDEIYANDEIYGSDELRANHEIYGSDEIRANDEIYANDEIHANDDIYLNDEIRANDEICAKDEIGTVNEISAKYEICANDAFEKYRKDKVQKKSRKNVFDDDSLRDADMVIAKILSNKCFLLHSKLARKDKKFSKTCDVCSKSFDRIGDLKRHLIEHVVYSTLAKNPVDENGSLCIQCEVCGEKTFSKTDKYKEHLREHAKLTLYQCAICNKSFSDSSNFSKHKKIHGSQYFQCDLCQRKFNSKKMITQHMDYHNKNPPQECSFCDKVFYFESMLNKHVKCAHIKETSARFRCRFCHQYYKSLKEKWDHEWYVHKVRKVVADCIVCDAKFRKYAELKRHCNAIHKLNLPSAKYFGEMKREL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -