Pkot016597.1
Basic Information
- Insect
- Pachliopta kotzebuea
- Gene Symbol
- -
- Assembly
- GCA_018246255.1
- Location
- DWLS01013162.1:1078-2208[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0031 0.28 12.5 0.4 3 23 60 81 58 81 0.89 2 10 0.02 1.8 9.9 0.8 2 23 107 129 106 129 0.94 3 10 0.00041 0.037 15.2 0.3 2 23 152 173 151 173 0.97 4 10 0.00012 0.011 16.9 0.5 1 23 177 199 177 199 0.98 5 10 0.0045 0.41 11.9 4.2 1 23 204 227 204 227 0.95 6 10 2.4 2.2e+02 3.3 0.5 2 23 235 257 234 257 0.78 7 10 0.00014 0.013 16.7 2.0 2 23 265 287 264 287 0.96 8 10 0.00081 0.073 14.3 6.1 1 23 293 315 293 315 0.96 9 10 7.7e-07 6.9e-05 23.8 1.1 1 23 321 343 321 343 0.99 10 10 4e-05 0.0036 18.4 4.3 1 23 349 372 349 372 0.98
Sequence Information
- Coding Sequence
- ATGATCAAAATAGAAAAGGGGAACGGGAAACCAGTGGAAGTGAAGTTCATATCAAAGAGTAAGACCAGAAGTAGGAAATCGCTCACCGaagcaaagaaaaatttacacaatttGAGTATAATTTTGCTTAATTCGAACGCAAACCCAATCAGGTGCAAAGATAGCCTGGGGTACGGCTGCGTGTTCTGCCCCAAACAGTTCCCCCAACCCACCAAACTGAAGAAACACTTTCTAGACGAACACAATAATCACAGGCTGATCAAATTCATGTCCAGCAAACTCTTCGAGAATGTGGTTAAACTTGACATAACGTTTTTGTGCTGCGCCCTTTGCGACACCGAGTTCCAACAGCTGGACGAATTTGTAGAACATTTGAAGAGTACCCACAAAAAGGATCTGTACTTCGACGCCAAGAGTCAGATACTTCCGTTCAGGTTCAACACGCCGGAATTGAGATGCGCGATCTGCTCCACGGAGTACGCCACTTTCAAGCTCCTCCAGGAGCACATGAACACCCATTTCAGGAATTATCCGTGTAAGATATGCGGTGGGTGCTACGTAACGGAGCGGTTGCTGCAGGGTCACATCAAACGGCACGGCAATGGCGAGTACAAGTGCTCTGAGTGCGAAAAAACCTTCACCAGCATATACAAGAGGCGCGAGCACGTCCACAGAACGCACCTCGGTTTCAACAAGAGGAATAAGTGTCAGTTCTGTGACGAGAGATTCTTAGATTACTGGAAGAAGATCGATCACATGGTGAAGGTCCACGGCGCTCCCCCGGTCGTGTTGAAGTGCCAAGCTTGCGAGCGCACTTTCAACAACCAGAGGGCGTTGACGAGGCATAAGAAGAAGGACCATTTGCTAGAAAGGAGGCACAACTGTTCTGAATGCGAGATGAAGTTCTTCAGCAGCAGCTGTTTAAGGAAGCACATGGCGAAGCATACGGGCTTGAGGCAGTACACGTGTGACGTGTGCCAGAAGTCGTATGGCAGGAAGAACACGCTGAGGGAGCACATGAGGATCCACGCGGACGACAGGCGCTTCAAGTGTGAGCACTGCGGGCAGGCGTTCGTTCAGAAGTGCAGCTGGAGGGGGCACATGAGGTCCAAGCACGGAGAAAACGTATAA
- Protein Sequence
- MIKIEKGNGKPVEVKFISKSKTRSRKSLTEAKKNLHNLSIILLNSNANPIRCKDSLGYGCVFCPKQFPQPTKLKKHFLDEHNNHRLIKFMSSKLFENVVKLDITFLCCALCDTEFQQLDEFVEHLKSTHKKDLYFDAKSQILPFRFNTPELRCAICSTEYATFKLLQEHMNTHFRNYPCKICGGCYVTERLLQGHIKRHGNGEYKCSECEKTFTSIYKRREHVHRTHLGFNKRNKCQFCDERFLDYWKKIDHMVKVHGAPPVVLKCQACERTFNNQRALTRHKKKDHLLERRHNCSECEMKFFSSSCLRKHMAKHTGLRQYTCDVCQKSYGRKNTLREHMRIHADDRRFKCEHCGQAFVQKCSWRGHMRSKHGENV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01158171;
- 90% Identity
- iTF_00249932; iTF_01495274; iTF_01494575; iTF_00180724; iTF_01496022; iTF_01496798;
- 80% Identity
- -