Basic Information

Insect: Pachliopta kotzebuea
Gene Symbol: -
Assembly: GCA_018246255.1
Location: DWLS01000782.1:15544-18364[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1.5e-06 0.00014 22.9 2.9 1 23 207 229 207 229 0.98

2 11 0.00032 0.029 15.5 4.1 1 23 235 258 235 258 0.97

3 11 0.082 7.4 8.0 0.0 1 23 268 290 268 290 0.97

4 11 0.61 55 5.2 4.0 2 23 298 319 297 319 0.90

5 11 0.0083 0.75 11.1 1.6 1 23 325 347 325 347 0.99

6 11 0.0042 0.38 12.0 4.0 1 23 353 376 353 376 0.97

7 11 0.013 1.2 10.5 2.1 2 23 382 401 381 401 0.97

8 11 1.5e-06 0.00014 22.9 3.7 1 23 407 429 407 429 0.98

9 11 1.2e-06 0.00011 23.2 0.7 1 23 435 457 435 457 0.98

10 11 1.8e-05 0.0016 19.5 0.8 1 23 463 486 463 486 0.97

11 11 0.0014 0.13 13.5 3.2 1 21 492 512 492 513 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1.5e-06	0.00014	22.9	2.9	1	23	207	229	207	229	0.98
2	11	0.00032	0.029	15.5	4.1	1	23	235	258	235	258	0.97
3	11	0.082	7.4	8.0	0.0	1	23	268	290	268	290	0.97
4	11	0.61	55	5.2	4.0	2	23	298	319	297	319	0.90
5	11	0.0083	0.75	11.1	1.6	1	23	325	347	325	347	0.99
6	11	0.0042	0.38	12.0	4.0	1	23	353	376	353	376	0.97
7	11	0.013	1.2	10.5	2.1	2	23	382	401	381	401	0.97
8	11	1.5e-06	0.00014	22.9	3.7	1	23	407	429	407	429	0.98
9	11	1.2e-06	0.00011	23.2	0.7	1	23	435	457	435	457	0.98
10	11	1.8e-05	0.0016	19.5	0.8	1	23	463	486	463	486	0.97
11	11	0.0014	0.13	13.5	3.2	1	21	492	512	492	513	0.96

Sequence Information

Coding Sequence: ATggctaatataaaaaacaaagtaaaggCACCTAAAAATGCTTCACTTAAAAGTAAGCATACTGATAAAAACAGTCAATCATCTGCAGGTATGAATGATGGAAAGCATACTCACATTGTAATGAAAAGACCTTCCGGTAAAGAAAGTTTGGcatcaaaagaaaaattgcaATTGTTTCTCAAAAATGGTCATCtgattaaagataaattaaagaaaaaaaaacttgcatGTAATGAGAAAAATGAATTAGAATTAGCTAAAGGCAATTTTATGGCTAAAAGTGGACGAATAAagtcaaaaaagaaattaaacttaaaatttcttgacaatattttaaaaagtgaattATTGATCAATGATAATAAAGCACAAACTGAAAAAGGTACATCACAACAAACTTCGGGATCTGATggattaaataacaatgaaactGGTTTGACGAATCAAAATGGAACAAATTCagctataaacattttaaacaatggaagtaagaaaaaaaaatcaaaacattgtgacaaagaaacaaaattacataagAGAAAACAGGAAAAGAAAGATAGTACATCATGGATGGCTACACGGTGTCTAAGTTATGATGTATCTGCAAAGAGACAAATATATCAATGTGACTattgcaaaaaattttttatcaacaaaaccTCTTTGCGTCGACATATTTATGTGCACCTCAAAGTAGTCCCATACACCtgcaaatattgttataaacgattctatataaaagaaaatatgagaACTCACATGAAGTTACAACATGCAAGAGGTTTGAAAGTTGCTAATCATTATATTTGTGGTGTCTGTGAAGAACCATTCTTGTTGAAGGACAAGCTGGATCAACACATGATGATACATGTGAAAAATGAAGAAttactaaaatgtattttttgtacCAAGCAGTTCACTCATCATGTGCTATTAAATGAGCATGAGAAAGAACATTTAATCACTGGAAAATATAAGTGTAGCGCCTGTGACATGAGTTACGATTGCAGAAGTAATCTTGCCCTTCACATCAAaagtcatttaaaaattaaggatTATGTGTGCCAGCATTGTGGTAAGGAATTTCTAAGACTTACATCTATGAGAAGACATGTCCAGATATGCCATGCAGGGCAAACAATACAATGTCCAATATGcaagaaaaagttaaaaggCCATTTAACTGAGCATTTACGTACCCATGAGAAAAAACGACCCCATAAATGTCAGGATTGTGGACAGAGGTTTACTCAATCCACACAGTTGAATGTTCATCGCCGTTCACATACAGGTGATAGACCATACCCTTGCAGGATTTGTGGACGTCCATTTACACATTCCAATGCACTGATGCTTCATATCAGACGACATACTGGAGAAAAACCATTTAAATGTGCAATGTGTCCACTTTCGTTCTCTCAATTACCTCATATGAAGGCACACATGAGGAATATACATGGCAACAACAACCCATACAAATGTGAAAAATGTAAGCAATTCTTCAAATTGAAAGCCCATTTGGAGTCACATTATAAACTATGTAAAAAATCAGAGCAGGATCTGTCAAATCAAGAAAAGCTCCATTCTGCACGGGCATATGAGGGAATTGAAGTAGAGTCAGTCATGAGTTTATCCCGTATGAGATTTCTGCTGGCACTCCTCTTCACTATGATTGCAAGCAaggaaaaactaaaatatttagGATTTAATAAGCGTCTTATAGATGATTTACTGTTGGAGTCTCTGGAGGCAATGGGACATACTCCATGCAGAAATGAATCCTTGTCCCCTTTGAAACGTCTTAGAAACAATATAGACATCTTGTTAAAAGGAACAGTTCCAAGAGAGAAGATGGAAAGgtttgaaaaagaaaacaggACTACAGAAGAACTGCTGGAATTACTGACCAATGAAAAGAAAGAACAGTAA
Protein Sequence: MANIKNKVKAPKNASLKSKHTDKNSQSSAGMNDGKHTHIVMKRPSGKESLASKEKLQLFLKNGHLIKDKLKKKKLACNEKNELELAKGNFMAKSGRIKSKKKLNLKFLDNILKSELLINDNKAQTEKGTSQQTSGSDGLNNNETGLTNQNGTNSAINILNNGSKKKKSKHCDKETKLHKRKQEKKDSTSWMATRCLSYDVSAKRQIYQCDYCKKFFINKTSLRRHIYVHLKVVPYTCKYCYKRFYIKENMRTHMKLQHARGLKVANHYICGVCEEPFLLKDKLDQHMMIHVKNEELLKCIFCTKQFTHHVLLNEHEKEHLITGKYKCSACDMSYDCRSNLALHIKSHLKIKDYVCQHCGKEFLRLTSMRRHVQICHAGQTIQCPICKKKLKGHLTEHLRTHEKKRPHKCQDCGQRFTQSTQLNVHRRSHTGDRPYPCRICGRPFTHSNALMLHIRRHTGEKPFKCAMCPLSFSQLPHMKAHMRNIHGNNNPYKCEKCKQFFKLKAHLESHYKLCKKSEQDLSNQEKLHSARAYEGIEVESVMSLSRMRFLLALLFTMIASKEKLKYLGFNKRLIDDLLLESLEAMGHTPCRNESLSPLKRLRNNIDILLKGTVPREKMERFEKENRTTEELLELLTNEKKEQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00197561;
90% Identity: -
80% Identity: -