Pkot000319.1
Basic Information
- Insect
- Pachliopta kotzebuea
- Gene Symbol
- -
- Assembly
- GCA_018246255.1
- Location
- DWLS01000070.1:17592-21064[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 3.5 3.2e+02 2.8 1.7 1 20 95 114 95 115 0.94 2 24 1.3 1.2e+02 4.2 1.7 3 23 145 165 144 165 0.91 3 24 0.01 0.94 10.8 0.2 2 23 188 209 187 209 0.97 4 24 0.0021 0.19 13.0 0.1 1 23 213 235 213 235 0.96 5 24 0.052 4.7 8.6 1.3 1 21 240 260 240 263 0.74 6 24 0.0061 0.55 11.5 1.1 1 23 269 292 269 292 0.95 7 24 0.0022 0.2 12.9 0.3 1 23 299 322 299 322 0.95 8 24 0.00064 0.058 14.6 1.9 1 23 329 351 329 351 0.95 9 24 5.2e-06 0.00047 21.2 2.9 1 23 357 379 357 379 0.98 10 24 0.007 0.63 11.3 0.2 2 21 383 402 382 403 0.94 11 24 0.0015 0.14 13.4 0.3 1 23 474 497 474 497 0.96 12 24 0.067 6.1 8.2 1.9 2 23 524 546 523 546 0.94 13 24 0.00071 0.064 14.5 4.4 1 23 568 590 568 590 0.98 14 24 0.00013 0.012 16.8 0.5 1 23 594 616 594 616 0.97 15 24 0.0065 0.59 11.4 0.4 1 23 650 673 650 673 0.90 16 24 0.015 1.3 10.3 1.8 1 23 680 703 680 703 0.95 17 24 0.51 47 5.5 0.2 1 14 710 723 710 726 0.89 18 24 0.091 8.2 7.8 0.0 1 20 770 789 770 792 0.86 19 24 0.00041 0.037 15.2 0.4 3 23 819 840 817 840 0.92 20 24 0.22 20 6.6 1.1 1 23 862 884 862 884 0.98 21 24 0.0077 0.69 11.2 3.9 1 21 888 908 888 910 0.94 22 24 0.17 15 7.0 0.1 1 23 915 938 915 938 0.95 23 24 0.04 3.6 8.9 3.0 1 23 944 967 944 967 0.96 24 24 2.6 2.3e+02 3.3 0.1 1 23 973 996 973 996 0.90
Sequence Information
- Coding Sequence
- atgaaaataaatttgttgagAAAGGAAGACTTTGCATATAAGAAGCCGGCAAAGAATGAAGCTTActcaaaattctttttatttttaggatGTCAAGGACAAAGAGGAAACGAAACTATcgttaaaattgaaaaatgtgatgatttaaaattaaaagatgtaaagGAAAAACGACGATATGTCAGGAGCGCCCGCGCCGAGGCTAGGATCCTTACAAAGAGAAATGCCAATACCCTCCTGGAATGTTGGTCCCTCTGTCCGTTCAGATGGCAGAGGAATCGCTTCAAATGCGCGTACTGCGAGGacagttttttatattgcaGCGATCTGAGGCAGCACGTTACCGATTGCTCCTCCAAGCACAGCGTTAAAGACATCTACAGCAAGTTTAAAGAAATGTCTCTTATCAATGTGGACGTGACTGACGCTTCCTGCCGTCTATGCAAATGTCCTTACTCTAACATCAGTCAAATGCGTCAGCACGCCGTATACCATGGATACCACTTCGACACTTCCCAACCTGACGGCGTGCTGCCTTTCAGTCTTGATAAGGAATGCTGGCGCTGCGTCATATGCCGCGAGGTATTTAACAACTTCCTCAAACTCTACGAGCATATGAACGTACATTATCAGCACTACATCTGCCCGACTTGCGGCAAGGGTTACATGACCGCACCCCGTCTGAGAAAACATTCCGAGGTGCACATAACAGGCTCGTTTCCCTGCGATAAATGCGGAAGGGCATTCACGATGCGCGCAGCCCGCGACCACCACAAGGCGCACGCGCATGCCAAGGGCCCAAGATACGAATGTCCGCATTGCAACATGCGTTTCAACGGTTACTACGACAGAATGAATCACCTGAATGAAGCTCATAGAGAGAAAGAGGTCTCTTACAAGTGCAACGTCTGCGAACTGTCGTTCAAGACGAGCGGAAAGCGCGCGATGCACGTACGCGCTGTACATCTACCGCAGCCGCGTAATTTTGCATGTCCGTGCTGCGATTGGCTCTTCAAGACCAGTTACGAACTGAAGAGGCACATGGTTAAGCACACCGGAGAAAGAAACTTTTGTTGTACTGTATGCGGCAAGTCTTACCCGAGAAGTCGCGCTTTAAGGACCCATCTGAAAACTCATGAGGAGCTCACTTGCAAGTGGTGCGGCGCGCTGTTCAAACAACGTAGTCAGATGGTCACCCACGTGCGTTCCGCTAAAGCGGAAGCGGtggaaaatgtaataaagcgAATTAggaagttaaaagaaaacgtGAGCGCGCGCCAAATGCGGAGACGCCGGCGCGCGAACAACGAGCTGGCAGAGGAATCGGAAAAGCGAATCTCCAAAACAATGATGAGGAGGAACGCCTTGACCATTTTGGAGTGTTCCACGGCGTGGGCGTTCCGCTGGTTTCACAGCGCATTTTTCTGCTCCTATTGCGACGAAAAGTTCGTTGATACCGCACCCCTGAGGGAACATGTACTCACAACTCATATTTCGTGTAATCCCACTGGACGCGTATTCTCAAAATTGACCGAAAACAACATGGTTAAAATTGACATCACAAATTTAACTTGTAGGCTCTGCAGTTACAGCTGCAGCACCATAGACTTACTTAAGGATCACTTGACAAGTtcacataaaaagaaaatatggaACGAGCATAGCGATGGAGTTCTGCCGTTTAAACTTGATAAAGACGGTTTCCATTGTCAAATATGCTCTTATTATTTCTCCAacttttctaaattaaatgaacataTGAATTCGCATTACCAAAATTACATATGTGATGCTTGCGGAAAAGCTTTCGTCTCGAAATCTAGGTTCAGAACTCATGTGCAGTCGCATGAAATCGGCAATTTTCCCTGCGGAGAATGCAATGAGATCTTGCAAACGCGAGCAGCTCGCATGTGTCATAGGTTGAAGGTGCACAAAAAGGGTGTTAGATACACATGTCCGCGGTGCTCCGAAGTTTTCACAACTTACTATGCAAGAGCGAAACACTTGGTGGAAAGTCATGCGCAGCAGAAAAAGGATTACGAATGCAGCGCGTGCGGAAAAGTCTTCGAGACAAGCTGCAAGCGAGCAACGCACTATCGCGCAACCCACAAACCCATCGAGAAACGATACGAGTGTCAGTACTGCTCTTGGTATTTCGTCAgaaATGAAGAAATCAATGAGACCGAACCAAAAGAAAAGGTTAAAGTTAAATGGAACAGAAAACGTAAGCTAGCAGGGGATAAATCTAATGCAGCGATCATCTTACAATGTTCAAACGCCGTCACATTTAGATGGAAACGAGGGAGATTCATGTGCGGCTACTGCCCTCGCGTTTTCCCCAGTATCGCCGACATCCGCCTTCACTCTGTCGAGCATAAAAATAAGCTCGCCGTCTTCGAAAATTCTGAAGTACGAAATTCTTTCCCTTTACGCGTAGACATCGCTGATCTGGCTTGTAATTATTGTGGACAAAAATTTGACAATTtggatgattttaaaattcatcttTCCGAAAAGCATGACAAATGTTTCCACTTAAATCACGGTAATGGTCTGTTGCCGTTTGTGCTAACTGATGAAGAATTCAGATGCGTCAATTGCCACAATCAGTACGAAAGTTTTATGGGTCTATTGGCTCATATGAACGAACATTACGCGACATATATCTGTTATATCTGCGGCAAAGGTTACTCAGGGAAACACAAACTACAATCGCATTTGAAATGCCACGAATCAGGCAAATTTGAGTGCCCCAAGTGTGACAGTGTGTTGCCGAGTAGAACTGCCAAGAGTAGACATCTGTCTGTCGCTCACGGACCAAGAGAACGCTACCGATGTCCACTCTGCGAGGAGCACTTCATCTCCTACCATTCTCGACTACGACACTTGGACAAGATACACGGAAGGAAATCCGAGTACCGATGCAATTTGTGTTCTTCTATATTTGCTAGTGGCGCTTTAAGAAATTATCACGTAAAGATTGCGCATAAAGTTAAGAAGAATAACAAGTAA
- Protein Sequence
- MKINLLRKEDFAYKKPAKNEAYSKFFLFLGCQGQRGNETIVKIEKCDDLKLKDVKEKRRYVRSARAEARILTKRNANTLLECWSLCPFRWQRNRFKCAYCEDSFLYCSDLRQHVTDCSSKHSVKDIYSKFKEMSLINVDVTDASCRLCKCPYSNISQMRQHAVYHGYHFDTSQPDGVLPFSLDKECWRCVICREVFNNFLKLYEHMNVHYQHYICPTCGKGYMTAPRLRKHSEVHITGSFPCDKCGRAFTMRAARDHHKAHAHAKGPRYECPHCNMRFNGYYDRMNHLNEAHREKEVSYKCNVCELSFKTSGKRAMHVRAVHLPQPRNFACPCCDWLFKTSYELKRHMVKHTGERNFCCTVCGKSYPRSRALRTHLKTHEELTCKWCGALFKQRSQMVTHVRSAKAEAVENVIKRIRKLKENVSARQMRRRRRANNELAEESEKRISKTMMRRNALTILECSTAWAFRWFHSAFFCSYCDEKFVDTAPLREHVLTTHISCNPTGRVFSKLTENNMVKIDITNLTCRLCSYSCSTIDLLKDHLTSSHKKKIWNEHSDGVLPFKLDKDGFHCQICSYYFSNFSKLNEHMNSHYQNYICDACGKAFVSKSRFRTHVQSHEIGNFPCGECNEILQTRAARMCHRLKVHKKGVRYTCPRCSEVFTTYYARAKHLVESHAQQKKDYECSACGKVFETSCKRATHYRATHKPIEKRYECQYCSWYFVRNEEINETEPKEKVKVKWNRKRKLAGDKSNAAIILQCSNAVTFRWKRGRFMCGYCPRVFPSIADIRLHSVEHKNKLAVFENSEVRNSFPLRVDIADLACNYCGQKFDNLDDFKIHLSEKHDKCFHLNHGNGLLPFVLTDEEFRCVNCHNQYESFMGLLAHMNEHYATYICYICGKGYSGKHKLQSHLKCHESGKFECPKCDSVLPSRTAKSRHLSVAHGPRERYRCPLCEEHFISYHSRLRHLDKIHGRKSEYRCNLCSSIFASGALRNYHVKIAHKVKKNNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -