Basic Information

Insect: Pachliopta kotzebuea
Gene Symbol: -
Assembly: GCA_018246255.1
Location: DWLS01001009.1:12727-18528[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 42 0.75 67 5.0 6.0 1 23 24 46 24 46 0.97

2 42 0.12 11 7.4 0.0 2 23 72 94 71 94 0.93

3 42 1.7 1.5e+02 3.9 0.3 2 23 115 137 114 137 0.93

4 42 5.2 4.7e+02 2.3 4.0 1 23 198 221 198 221 0.95

5 42 3.5 3.1e+02 2.9 0.1 2 23 249 271 248 271 0.92

6 42 0.0001 0.0094 17.1 0.4 2 23 294 316 293 316 0.96

7 42 0.67 61 5.1 0.5 3 23 323 344 321 344 0.93

8 42 0.21 19 6.7 2.3 1 23 349 372 349 372 0.96

9 42 1.6 1.4e+02 3.9 0.6 3 23 379 400 377 400 0.96

10 42 0.0083 0.75 11.1 6.5 1 23 404 427 404 427 0.97

11 42 0.00029 0.027 15.7 0.5 2 23 434 455 433 455 0.96

12 42 0.043 3.9 8.9 2.4 1 23 499 521 499 521 0.98

13 42 5.4 4.8e+02 2.3 0.1 3 23 550 571 548 571 0.82

14 42 0.0036 0.32 12.2 0.7 1 23 619 642 619 642 0.95

15 42 0.002 0.18 13.0 1.7 1 23 646 669 646 669 0.96

16 42 0.0023 0.21 12.9 2.1 2 23 672 694 671 694 0.96

17 42 0.38 34 5.9 0.3 2 19 700 717 699 720 0.93

18 42 0.031 2.8 9.3 2.2 1 21 770 790 770 793 0.90

19 42 0.56 50 5.4 0.1 2 23 821 843 820 843 0.94

20 42 0.00033 0.03 15.5 0.3 1 23 865 888 865 888 0.96

21 42 8e-06 0.00072 20.6 2.1 3 23 895 916 894 916 0.95

22 42 0.00034 0.031 15.5 2.5 2 23 922 944 921 944 0.93

23 42 0.001 0.093 14.0 4.1 2 23 950 972 949 972 0.94

24 42 0.00015 0.013 16.6 5.7 1 23 976 999 976 999 0.97

25 42 0.053 4.8 8.6 0.4 2 23 1006 1027 1005 1027 0.96

26 42 2.8 2.5e+02 3.2 0.9 1 10 1033 1042 1033 1046 0.95

27 42 0.0032 0.29 12.4 3.6 3 23 1089 1109 1087 1109 0.97

28 42 2.2 2e+02 3.5 0.0 2 23 1137 1159 1136 1159 0.90

29 42 0.047 4.2 8.7 1.4 1 23 1179 1202 1179 1202 0.96

30 42 0.0033 0.3 12.4 1.0 1 23 1207 1230 1207 1230 0.96

31 42 0.00041 0.037 15.2 2.3 1 23 1235 1258 1235 1258 0.95

32 42 0.018 1.6 10.0 2.1 2 20 1261 1279 1261 1283 0.94

33 42 0.0078 0.71 11.2 1.6 2 22 1290 1310 1290 1310 0.95

34 42 0.045 4.1 8.8 2.9 1 23 1366 1389 1366 1389 0.92

35 42 0.87 78 4.7 0.1 2 23 1417 1439 1416 1439 0.92

36 42 5.2 4.7e+02 2.3 0.1 3 23 1463 1485 1461 1485 0.92

37 42 0.00017 0.015 16.4 0.6 3 23 1492 1513 1491 1513 0.94

38 42 0.02 1.8 9.9 4.5 2 23 1518 1540 1517 1540 0.93

39 42 0.0048 0.43 11.9 2.5 1 23 1545 1568 1545 1568 0.97

40 42 9.1e-06 0.00082 20.4 5.2 1 23 1572 1595 1572 1595 0.97

41 42 0.00053 0.048 14.9 0.3 2 23 1602 1623 1601 1623 0.96

42 42 0.00024 0.022 15.9 0.6 1 23 1629 1651 1629 1651 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	42	0.75	67	5.0	6.0	1	23	24	46	24	46	0.97
2	42	0.12	11	7.4	0.0	2	23	72	94	71	94	0.93
3	42	1.7	1.5e+02	3.9	0.3	2	23	115	137	114	137	0.93
4	42	5.2	4.7e+02	2.3	4.0	1	23	198	221	198	221	0.95
5	42	3.5	3.1e+02	2.9	0.1	2	23	249	271	248	271	0.92
6	42	0.0001	0.0094	17.1	0.4	2	23	294	316	293	316	0.96
7	42	0.67	61	5.1	0.5	3	23	323	344	321	344	0.93
8	42	0.21	19	6.7	2.3	1	23	349	372	349	372	0.96
9	42	1.6	1.4e+02	3.9	0.6	3	23	379	400	377	400	0.96
10	42	0.0083	0.75	11.1	6.5	1	23	404	427	404	427	0.97
11	42	0.00029	0.027	15.7	0.5	2	23	434	455	433	455	0.96
12	42	0.043	3.9	8.9	2.4	1	23	499	521	499	521	0.98
13	42	5.4	4.8e+02	2.3	0.1	3	23	550	571	548	571	0.82
14	42	0.0036	0.32	12.2	0.7	1	23	619	642	619	642	0.95
15	42	0.002	0.18	13.0	1.7	1	23	646	669	646	669	0.96
16	42	0.0023	0.21	12.9	2.1	2	23	672	694	671	694	0.96
17	42	0.38	34	5.9	0.3	2	19	700	717	699	720	0.93
18	42	0.031	2.8	9.3	2.2	1	21	770	790	770	793	0.90
19	42	0.56	50	5.4	0.1	2	23	821	843	820	843	0.94
20	42	0.00033	0.03	15.5	0.3	1	23	865	888	865	888	0.96
21	42	8e-06	0.00072	20.6	2.1	3	23	895	916	894	916	0.95
22	42	0.00034	0.031	15.5	2.5	2	23	922	944	921	944	0.93
23	42	0.001	0.093	14.0	4.1	2	23	950	972	949	972	0.94
24	42	0.00015	0.013	16.6	5.7	1	23	976	999	976	999	0.97
25	42	0.053	4.8	8.6	0.4	2	23	1006	1027	1005	1027	0.96
26	42	2.8	2.5e+02	3.2	0.9	1	10	1033	1042	1033	1046	0.95
27	42	0.0032	0.29	12.4	3.6	3	23	1089	1109	1087	1109	0.97
28	42	2.2	2e+02	3.5	0.0	2	23	1137	1159	1136	1159	0.90
29	42	0.047	4.2	8.7	1.4	1	23	1179	1202	1179	1202	0.96
30	42	0.0033	0.3	12.4	1.0	1	23	1207	1230	1207	1230	0.96
31	42	0.00041	0.037	15.2	2.3	1	23	1235	1258	1235	1258	0.95
32	42	0.018	1.6	10.0	2.1	2	20	1261	1279	1261	1283	0.94
33	42	0.0078	0.71	11.2	1.6	2	22	1290	1310	1290	1310	0.95
34	42	0.045	4.1	8.8	2.9	1	23	1366	1389	1366	1389	0.92
35	42	0.87	78	4.7	0.1	2	23	1417	1439	1416	1439	0.92
36	42	5.2	4.7e+02	2.3	0.1	3	23	1463	1485	1461	1485	0.92
37	42	0.00017	0.015	16.4	0.6	3	23	1492	1513	1491	1513	0.94
38	42	0.02	1.8	9.9	4.5	2	23	1518	1540	1517	1540	0.93
39	42	0.0048	0.43	11.9	2.5	1	23	1545	1568	1545	1568	0.97
40	42	9.1e-06	0.00082	20.4	5.2	1	23	1572	1595	1572	1595	0.97
41	42	0.00053	0.048	14.9	0.3	2	23	1602	1623	1601	1623	0.96
42	42	0.00024	0.022	15.9	0.6	1	23	1629	1651	1629	1651	0.97

Sequence Information

Coding Sequence: ATGCGTAGACGAGCGCTGGCAATACTCTTCAGTAACACATCCGTAATACCGTTTAAATGGCGTGAAAATTACATTTgcttttattgtaacaaaacCATAAATCTGCACAAAGATCTGCAACATCACAATAAGTCGCACGACGCCAATGTCCAGGAATACTTTGAAGAAAGAACGCATAATTTTGTCGGAGTAAAATGCGACGTTTCTGATCTCGTTTGCAAAATATGCGTTCGTACATTTGAACGTATAGATTCGATAGTAGATCATCTAATTAGTGAACATGATCTAGGTATTGATAAAGGAGTAAATCTATCTGTAGTTTGCTACAACTTGAGAGATTTGAAATGCGTTTTATGTCATCTGAAGCTTGTATCAGTCGGAAGTTTAATGTCACACATATTCATTAATCACAGACAAAAGTCATATTTTGATGTAGACGTAGAAAAGActggaaatattatatatcataatcGAAGGTCTGAAGCGCGGGAGAAATTGTCACGTCGTAAAATTTTGGAAATCAATCGAAAAAATTTAGAATGTATTCTAAAATGGTCTACGGCTATACCGTTTAAGTATTATCAAAACAGATTCACCTGCTTCTATTGTTCCATGAGCTTTCTAAAGCATGAAGAGATGAGAGATCACACCACTACCTCGCACACCATCGAAAACGTAGAGGGTAGTTTATCAGAGATTCTAAAAAGGACCACCTCTCACGCAAGCATGGACATAGCTTCGTTATCATGTAGAATTTGTATGGAAAATTTTGATGAATTAAATAACCTCATAGATCATTTGATTCAAACACATGATGTTGAATACAACAGGAGCGCGCACATGGCAATACCAACATTCAAATTAATCAAGTACGAAATGCCATGCTCGATATGTCCAAAAAAGTTTGCTTATTTCAACTCTTTACTAAAACACATAAAGACAGACCACAATCCGAAGTCGCATTTGTGTTCAACTTGCGGTTCACGTTTTGGAAGCGAAGCTGTCCTGAACTCACACGTATCCCGCATACACGGGAGAGGTACATTCAAATGTGCACACTGCAATTCCACATTGAAATCGATGATCCAACTGAAGAGTCATAGAGCGAGATTGCACGGCTCGAAGGAGTTCGGATGTTCGCAGTGTAACGAGAGATTTCTAACAGATTACGGCAAACAGAAACACATGTTGACGGCGCATGGTTTGGGACATAAATGCACGCACTGCGACAAAATGTTCGTGAAAGATTCTTTCATGAGGAATCACGTCAGGAGGACTCACCTATCTGAACGCGACGTCGAATGTGCGGTATGCCGAAAGAAGTTCTTCGATAAGGAGCAACTGAAAGTTCACATGGTGAAACACAGCGGTTTCAGAGATTTTCATTATAATAAAAGACGAGCAGTAATGCCAAGTGCTAATAAAAAGAGGAGGGTGAACCTTTTGACACTGTTCAACAACACGACGTTGATACCGTTTAAATGGCGAGGAAAGTACATGTGCTTTTATTGTGGTGATGATTTCGCCGATTGCAATGTCTTGAGAAAACATACGAGATCCCACGGCGCTGTCTCCGAAACGGACCGTGCGATCAGACTTGTTAAATCCGGCGATTCTGAAGTCAAAATAGATGTATCGGATATTGCTTGTGAAATATGCTACGAGACTTTCGATAGCTTTGATGTTATAGTTGATCATTTAACagttaaacataaattgaaatacgATAGAGAGGTTCATTTAGATATAACATCGTATCGTCTGATTGATTTGAAGTGCTTACATTGCGATCAAAAACTTGATTATTTCAACAAATTGATTATTCACAATAACATATGCCATCCGATTCGATGTTTCATATGCGAGCAGTGCAAGATGAAGTTTAATAAGAAAAGAGACTTGGATGCCCACGTTAGAGCGCAACATAGAACAATTTATAGGTGCTTAAAGTGCTCTCTCACATTTAGAAATAATGTTGAGTTTCAAAATCATAAAATGAATGCCCATACCTCTTCATGTAATATTTGCTTCAGATCTTTCTCTTCCACGAGCAAAAGGTTAAAGCATATGAAAATAGATCATGACTTAGGCATGTTGCAATGCGGTTATTGCTTCAAAGTTATGACAACGAAGCAGAGTTTTCTTCGGCACGCGTCTTTATGTACACAATATGTTGATTGCGGTAAAGCTAACGCTTCAGAAGATACAGTTGATGAAAGGAAACTTTCTGTTAAGCGTATTAAAAGTGATTTTGTTTGCATCCTGAATATGTCAACAGCTATTCCATTTAAACATTATCTGAGTAGGTTTAGGTGTTTCTTTTGTCCTAAAGACTTTACCGATTGCGATGTTTTGAAACAGCATACTGTCGCAGACCACCCATtacatgatataaaattaaactctaTGAAAATAAGAAGTAGAGATGAAGGTCGTATTAAAATTGAtgtatcttctctttcttgcaAGGTTTGCTATGAACCGATGTCTGATTTACGTAATTTGTTAAATCATCTAACTGTTGTACATAAGGCTCATGTCGACAAATCTCTAGAATTCCACCTACAAGCGTTTAAACTTGTTAAGGATAATTTCGCTTGTCCAATTTGTGGTGAGTTTTACAGATACTTCACCATGCTACTGAAGCACATGAGCGTATCTCATACGGACAATGAGAACATCTGCTCGTACTGCGGGAAATGTTTTAGATCTCAACCCAACCTTCGAGCTCATGTTTCGCGGAGGCATAGATCTTCCTTATGCAGGTGTCCCCATTGTAATATAGAATTCAAtaccaataataatttacaaatacatttgGGCAAAGTGCACGGCACCAAAGTGGTCAAATGTTCCGAATGTAAAGAAAGATTCACGTCTCGTCACCACATGCAAAGGCACTTGATTTACGCTCATAGTTTAGGCCACCAATGTACCCATTGTGGTAAATTGTTCACTAGGAACTCTTTCATGATCAACCATATAAGACGGACACATTTGAAGGAAAGGAACATACAATGCGCTCTGTGTAGTGAGAGGTTTTTCGACGCGCAACGTCTCAAAATGCACATGGTTAAGCACTACGGAGAGCGTAACTTTCACTGTGACCTCTGCGGAAAGAAGTTCCTTTGGAAGAAAAACTTGAGAGATGAAACACAGCAAGCCCCGTGCGAGAGCTTTACCTCCGAGAAGAGGAGGAGGAACTTGCAAATTCTGTTCAACAACACGACGATTTTGCCATTCAAATGGCGCGGTAGGTGTCTCTGTTTCTATTGCGGGAAGAGCTATGCAGAGTATACCGACTTTAGGAAACATACGCGCTCTCACGGTCCGTGCACGACGAAAGACTATGCATTGAAAGTGATCAAAGGGAATCACATCGAGATAAAGATTGACGTCTCTGAGATCTCGTGCGAAATCTGCAATGAACCATTCCTCACATTCGATGAAATATTAAACCATTTAATAGTGAAACACGACCTGGGATACGATAAATCTGTAGATACGCCGTTTCAAGAATACAGGTTGGAGGATTTCCGCTGTCTTTTTTGCGAGCAGAAATTCAGATACTTTGGATATTTGGTCAATCATGTGAACAATGTACACCCTCAAAACAATTACATATGCAACGAGTGCGCTGCTTCTTTTAACAAAAAGAGAGATTTAGCGTTGCATTTGCGGCATAACCATCGAGAAGGGGGATATCCTTGCTCCGAATGCACGCAAACTTTCAAATCTCACGGCTTACTTCGCAGCCATCAGAACGATTTCCACTTCAGAAAGTGTAAATGGTGCGGGCTGAACTTCGCTTCATACAGTCTCTTACTGAAGCATACGCAATGCGATCACCCGGACGACGGCAGCGCCAAATGCCCGCATTGTTCCAAACAGTTAAACTCATCGCAAGGTTTAAAACAGCACATGAACAAATGCAAAGTTAACATGTTAGTTAAAATAGACCATCCCGTTGATAACAATTTCTCCGAAGACAATTTGCTGCAACCGAAAAAGAAAcagaatatattacaaatacgaCAAAATATCCAATGTGTTCTCAATATGTCCACTGCATTGCCTTTCAAGTTTTTCGCGAAATTTTGTTGCTTTTATTGCTctaaaaaatttgttgaatTTGACGAGCTCAAGGAACATACAATTTTGGAGCATCCTGTATGTGATTTGAAGTCGAAAAGcatgaaaaaatgtaaaggagAAAGGATAACGGTGAAAGTGGACACAACGGATTTAAGTTGTAAAATTTGCGGTCGCCAAATGGAAAATTTAGATGTTTTGATAGATCATCTTATATCCAAACATGAAGCGGCCTATGACAAATCTGTAACCGGATGTTTAGAACCTTATAAGATGATAAAAGATAACATAGCATGTCCGTTTTGTCCAAATCGCGTATTCAGGTATTTCGGTATCCTATTGAGGCACATTAATTCCGAGCacagtaataataacagaatTTGTGACTTCTGCGGTCGTAGTTTTAAAAGCGTGACCAATTTGAAGGTCCACATCACATATACGCATACGGGCGCGTGCGAGTGTGATGTGTGCGGTACCAAATACAAGAACCAGTGGTGCCTGAGCCGGCACAAAGCGAAAAGCCACAACGCGAAGGACTACAAATGCCCCAAGTGCCCAGAGCTGTTCCAATCACAATACCACAAACAGAAACATCTGATTAAAGTCCACGACATCGGCCACAAATGTACGTATTGCGGGAAAATGTTCACCAGGAACTCTTTCATGAAAGATCACATACGAAGGACGCATTTGAAAGAGAAGAACGTCGTGTGTTCAGTCTGTAATGAGAGATTCTTCGACAACTACTTGCTGAGAATGCACATGGTCAAACATGAAGGCCAGAGGAGGTTCAACTGCGACGTTTGCGGGAAGGCGTTTCTTAGGCGTAGTAATTTGAGCTCGCATAAGGAAATGCATAAAAAATATGGACATTTGCAGTCCTAA
Protein Sequence: MRRRALAILFSNTSVIPFKWRENYICFYCNKTINLHKDLQHHNKSHDANVQEYFEERTHNFVGVKCDVSDLVCKICVRTFERIDSIVDHLISEHDLGIDKGVNLSVVCYNLRDLKCVLCHLKLVSVGSLMSHIFINHRQKSYFDVDVEKTGNIIYHNRRSEAREKLSRRKILEINRKNLECILKWSTAIPFKYYQNRFTCFYCSMSFLKHEEMRDHTTTSHTIENVEGSLSEILKRTTSHASMDIASLSCRICMENFDELNNLIDHLIQTHDVEYNRSAHMAIPTFKLIKYEMPCSICPKKFAYFNSLLKHIKTDHNPKSHLCSTCGSRFGSEAVLNSHVSRIHGRGTFKCAHCNSTLKSMIQLKSHRARLHGSKEFGCSQCNERFLTDYGKQKHMLTAHGLGHKCTHCDKMFVKDSFMRNHVRRTHLSERDVECAVCRKKFFDKEQLKVHMVKHSGFRDFHYNKRRAVMPSANKKRRVNLLTLFNNTTLIPFKWRGKYMCFYCGDDFADCNVLRKHTRSHGAVSETDRAIRLVKSGDSEVKIDVSDIACEICYETFDSFDVIVDHLTVKHKLKYDREVHLDITSYRLIDLKCLHCDQKLDYFNKLIIHNNICHPIRCFICEQCKMKFNKKRDLDAHVRAQHRTIYRCLKCSLTFRNNVEFQNHKMNAHTSSCNICFRSFSSTSKRLKHMKIDHDLGMLQCGYCFKVMTTKQSFLRHASLCTQYVDCGKANASEDTVDERKLSVKRIKSDFVCILNMSTAIPFKHYLSRFRCFFCPKDFTDCDVLKQHTVADHPLHDIKLNSMKIRSRDEGRIKIDVSSLSCKVCYEPMSDLRNLLNHLTVVHKAHVDKSLEFHLQAFKLVKDNFACPICGEFYRYFTMLLKHMSVSHTDNENICSYCGKCFRSQPNLRAHVSRRHRSSLCRCPHCNIEFNTNNNLQIHLGKVHGTKVVKCSECKERFTSRHHMQRHLIYAHSLGHQCTHCGKLFTRNSFMINHIRRTHLKERNIQCALCSERFFDAQRLKMHMVKHYGERNFHCDLCGKKFLWKKNLRDETQQAPCESFTSEKRRRNLQILFNNTTILPFKWRGRCLCFYCGKSYAEYTDFRKHTRSHGPCTTKDYALKVIKGNHIEIKIDVSEISCEICNEPFLTFDEILNHLIVKHDLGYDKSVDTPFQEYRLEDFRCLFCEQKFRYFGYLVNHVNNVHPQNNYICNECAASFNKKRDLALHLRHNHREGGYPCSECTQTFKSHGLLRSHQNDFHFRKCKWCGLNFASYSLLLKHTQCDHPDDGSAKCPHCSKQLNSSQGLKQHMNKCKVNMLVKIDHPVDNNFSEDNLLQPKKKQNILQIRQNIQCVLNMSTALPFKFFAKFCCFYCSKKFVEFDELKEHTILEHPVCDLKSKSMKKCKGERITVKVDTTDLSCKICGRQMENLDVLIDHLISKHEAAYDKSVTGCLEPYKMIKDNIACPFCPNRVFRYFGILLRHINSEHSNNNRICDFCGRSFKSVTNLKVHITYTHTGACECDVCGTKYKNQWCLSRHKAKSHNAKDYKCPKCPELFQSQYHKQKHLIKVHDIGHKCTYCGKMFTRNSFMKDHIRRTHLKEKNVVCSVCNERFFDNYLLRMHMVKHEGQRRFNCDVCGKAFLRRSNLSSHKEMHKKYGHLQS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -