Oarm014685.1
Basic Information
- Insect
- Oxytorus armatus
- Gene Symbol
- -
- Assembly
- GCA_958009045.1
- Location
- OY253752.1:18882005-18885715[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00071 0.064 13.9 0.2 1 20 160 179 160 180 0.96 2 12 0.011 0.99 10.2 4.6 2 23 315 337 315 337 0.91 3 12 0.00017 0.015 15.9 2.6 3 23 393 414 391 414 0.94 4 12 0.00067 0.061 14.0 0.3 1 23 573 596 573 596 0.96 5 12 0.012 1.1 10.1 0.1 2 23 644 666 643 666 0.94 6 12 0.00077 0.07 13.8 0.2 3 23 691 712 689 712 0.93 7 12 0.14 13 6.7 4.4 2 23 776 798 775 798 0.96 8 12 0.015 1.4 9.8 2.4 3 23 813 834 811 834 0.94 9 12 0.00075 0.068 13.9 0.1 2 23 879 901 879 901 0.93 10 12 0.051 4.6 8.1 1.6 1 23 982 1004 982 1004 0.98 11 12 0.00079 0.072 13.8 1.6 3 23 1020 1041 1019 1041 0.98 12 12 0.0047 0.42 11.4 0.4 1 23 1117 1140 1117 1140 0.98
Sequence Information
- Coding Sequence
- ATGGCGTCCACAGTGGCCCGTGAACAATTGGGAATAATGGtggagcagcagcagcagcagcagcaaataAGTGAAATTGACAGCGAGAGTTCTAGCGGTTGCGAGGATCGGGAGGCACGAAAACGTTTACGGGAAGATACGGATAATATCGGTGGGAGTCCGAAGAAGCGTCGAAAACAAACGACACCGGTGAGATTTCCAACGTCATTGATAAACAACAGCGGCGAGCATCCCGAGttcgaggacgacgacgaggaggaggaagaggaggaagaggacGAGGACGATTTGGAGGGTGATGAACATGACGAAAAGGATGACAGAGGAGGAACGATTCGTCGCGACGAGGAGGATCATTCGCTGCTGGAAGGTAAGCCAAGAACGATATCACCGCGGGCGTTTATGCGAAATATCGTCGAAAAAACGGCAACGTCGATGACAACAACGTCCACGAAAGACGAGAATCTCAACAGCGAGTTTCGCTGTGAATTCTGCGGTCTTTCGTTCGACGGCAAGGACACACTGTCGCGACATCTCGAGTGCGAGCACGCGATAATTTGTAATCCGTCACAAGCACCACCGACCAATTCGCCGTTAGCCGATAATGTTAGAATTAAGTTAGAACCGACGCATCGGAGCCTCGACGATCCCGAGAGTCCGGTTAATCTGTCGAGTTTAGGTATGAAAAATTTCGCGGCGAATTGGCTCAGTAGCCAAAATCAGGCGCAGCAGCAACAACATTTGCAGGGACAATTACAAAATCCCGATGATTGGACATCACCGAGTCCCATAACTTCCGTTCCAAGTCATCTTCCGGCGCTAACATTTCCCGGTAATCTGACGCAGTATCTTCCTCTACCGGCATTTTCACTGACCGACGCCGGACAACTTAACCGTCCGCCTGTGGGTCCGGCACCAATAAGAATCTTCAATCCGGACGCTTACTGCGATCTCTGTAACAAGGAATTTTGCAACAAGTACTTTCTCAAGACACACAAAGCCAACAAGCATGGGATTTACGGTGAGAGCCCTTGTCAGAATTCCGGTGACAATAGTATGCCCGGTATTATGTTCACCGGTGCGTTTACCGGCGGTAGTGTGAAATTGGAACAGCCTCAGAGGCTCGAAGTTCCGGCGCCACTCGTTTCCGTGCCGTTGACCAACAACACGTTGGCCTGTGACGTTTGCCAGAAACGCTTCAAGAACGAGGATTCGCTGAGGAAGCACAAGCATAAGGTTCACAACGACTCGTTGGATAATCAGGAGTCACATTCGTTGCCGGCAACGGGCAGTAGCGTCGACGAGGAGCGTGAACTTTCGCGAAACAGTCCCAGCGCCATGGAGGCACTGTTCAAGCAGGAATTTGGCGTTGAACAGGAGGATTCGAAATTCATGCCAGCGCCACGTCATCTGTCGCCACAGTCGAGCCAGCAGGCGAGAGACTCGGGTTTCAATGTCGATCGTCTTCGAAGACTCGGTGTCATCAATCCCGAAGCATTTTGCGAGCTATGCTGCAAGGAATATTGCAATAAGTATTTCCTTCGTACGCACAAAATGAAGAGACACGGTATATACATTCAGGAGAGCGAAAAACCACCGAGTAATCCGGGTAACGCCGCGAGCTGGCATCAGATACAAACGAGTCCGTTGAATCTCATTGTGACGGACAGCAATGCGGGAAGTTCGTCGGAATCGGGCGATCGTTCTAACGATGATTACGAGTGCAAACAGTGCGGCATACGCTTTCAAACTTTAGGACTTTATCGTGCTCATCGCGCAAAAATTCACCCCTCGGACGAGCAAAAATCACCGAAGCAAGACTTCGAAATGGATCTGGCGGATCAACGAACCGACTCCATTTCCGAGGATCTTCAGAAGCTTCAAACGATGATATTACAATTGAACGGTCTGGAAACTAGTAAAGCAACGAGCTGCGGTGTTTGCGGCAGGGAGTGCGAGAACATCGGTGCTCTGAGGATTCACATGAGTCTTGAACATGGTGACATCGCCGAGGAGCTGTCGTCAACGCCGCAGCCAAACGAAAATTCGCTTAACGGCACATCGACTTTTTGCACTCTGTGCGATAAGGTATATCAGAATCCGGAAGCACTGAGACAACATATCACGGAGGAACATCGAAACAGTCCTAACGACGTTACGACAACGATTCCTTCACAGATCCCGGCGATTTCGACACCGGTTAAAGTTCAAATATCCGCTCCAGCGGTCGCAACACCGGTGATGATTCCCGTGCCGTCGACGGTCTCGGCGCAAACGGCCCCTCAGCCCGAAAGGAAAATCACATCGATGACACCAACGTCGAGCTACTGCGAGCTTTGTCGCAAGGAATTGTGCAACAAGTATTTCATGAAGACGCACATGCAGAAAATGCACAATATCGAGATAGAGAATGGCTCGCAGATCGGCGGCGTAATATGTAACATATGCAACAAAGAATTGTGCAGCAAATATTTTCTTCGTGTTCACAAGCAAAATACTCATGGCATCGTCGACGAGGGAAGTACGGCGTCGAGCAAGCAGGAATCTTACGAGTCGTCGAGCAACGACGACACGGCATTAAAGCCCGATCAGCTTGGCGACTTGAGTCATCGTTATTTCACACATTTCACGGAAGTTTGTCCGGTCTGTAGTCGACGTTTCAGAAGCATAAAATGGCTAAAGGCGCATCTCCTCGGTGATCATGGAAAAATGGGAATAGAGAAATGGCGCGAGCTCGAGAATCAGTATCAAAATTCAACGAGAGCCGGTATAAGAGGTTCGGGGATTGCAGGTAGATTGGCCACTCAAAATCCGAGCATAAAAATACCCAATGGATTGGAGATGGTACAGCAGCAAATGAAGAATAACGATTACGCGGGTCTTGGTAATCAAGTTTTGTCGAGTCTGTTCGGTTCGACAACGGAGGAACAGCAGgcaaaaaattatcgttgctcTTACTGCAACTTCACCACCACGGTGCTGccgtttttgtttcttcacgAGAGATCGCACACCAGTCCGCGGGACAATAATCCGGCAATTGATCCTGCACTCCTCTGTCCGATATGCTCGCAAACTTTCGGCCAACCCGAACTGTTGCACCATCATTTGCTGACGCGTCATCAATTCTCGGGTCTGTTGTCACAGTTGCCCGGTCCTCTGATCAACAGCGGACGACTCGAGGTTGGTAACGTCGAGACGAGAAGCAATGAGATTTACGATAAGGTTGATTACGAGATGAAGGAGGAACGTCGTCAGGCTAGTCCGCAGGTATCATTGGGCAATGCCGAATCGATCAAGAGCCAAAAGATCGAGGAACCGGCGGTGCACGTTACACCTCAGGGAGCTTACAAGTGCGCGCAGTGCGGTTACGCAACGGCAAATCTGAACAGAATTAAGAAACACATAAGAAAGGATCACAAGACACTCGGTGACGCGACCGAGAGCGTTATAGACGAGCTGAGCAAAACCCTCAGGGACGTCGCGAACAAGCACAAATTACCGGCGAGTTACGCGATGCCACAGGACATGAATTCAAATCCCGACGCAACGACACTTATGCAACCGTTTCTGATCGAGGAACGTGAACGGGGAAGAATCGGCGATGAAACAAACACCGAGAGACGCTTCGCGCCTGCTCTCGTTTATTTGCCGGTTAGAGCGAGGATCGGCAATGTACTTACAGCATCGTTCAGTCTCAGTCCCGCCTGA
- Protein Sequence
- MASTVAREQLGIMVEQQQQQQQISEIDSESSSGCEDREARKRLREDTDNIGGSPKKRRKQTTPVRFPTSLINNSGEHPEFEDDDEEEEEEEEDEDDLEGDEHDEKDDRGGTIRRDEEDHSLLEGKPRTISPRAFMRNIVEKTATSMTTTSTKDENLNSEFRCEFCGLSFDGKDTLSRHLECEHAIICNPSQAPPTNSPLADNVRIKLEPTHRSLDDPESPVNLSSLGMKNFAANWLSSQNQAQQQQHLQGQLQNPDDWTSPSPITSVPSHLPALTFPGNLTQYLPLPAFSLTDAGQLNRPPVGPAPIRIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYGESPCQNSGDNSMPGIMFTGAFTGGSVKLEQPQRLEVPAPLVSVPLTNNTLACDVCQKRFKNEDSLRKHKHKVHNDSLDNQESHSLPATGSSVDEERELSRNSPSAMEALFKQEFGVEQEDSKFMPAPRHLSPQSSQQARDSGFNVDRLRRLGVINPEAFCELCCKEYCNKYFLRTHKMKRHGIYIQESEKPPSNPGNAASWHQIQTSPLNLIVTDSNAGSSSESGDRSNDDYECKQCGIRFQTLGLYRAHRAKIHPSDEQKSPKQDFEMDLADQRTDSISEDLQKLQTMILQLNGLETSKATSCGVCGRECENIGALRIHMSLEHGDIAEELSSTPQPNENSLNGTSTFCTLCDKVYQNPEALRQHITEEHRNSPNDVTTTIPSQIPAISTPVKVQISAPAVATPVMIPVPSTVSAQTAPQPERKITSMTPTSSYCELCRKELCNKYFMKTHMQKMHNIEIENGSQIGGVICNICNKELCSKYFLRVHKQNTHGIVDEGSTASSKQESYESSSNDDTALKPDQLGDLSHRYFTHFTEVCPVCSRRFRSIKWLKAHLLGDHGKMGIEKWRELENQYQNSTRAGIRGSGIAGRLATQNPSIKIPNGLEMVQQQMKNNDYAGLGNQVLSSLFGSTTEEQQAKNYRCSYCNFTTTVLPFLFLHERSHTSPRDNNPAIDPALLCPICSQTFGQPELLHHHLLTRHQFSGLLSQLPGPLINSGRLEVGNVETRSNEIYDKVDYEMKEERRQASPQVSLGNAESIKSQKIEEPAVHVTPQGAYKCAQCGYATANLNRIKKHIRKDHKTLGDATESVIDELSKTLRDVANKHKLPASYAMPQDMNSNPDATTLMQPFLIEERERGRIGDETNTERRFAPALVYLPVRARIGNVLTASFSLSPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -