Oarm011179.1
Basic Information
- Insect
- Oxytorus armatus
- Gene Symbol
- br
- Assembly
- GCA_958009045.1
- Location
- OY253750.1:254593-273922[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 2e-06 0.00019 21.9 2.0 1 23 773 795 773 795 0.98 2 7 8e-06 0.00072 20.1 2.3 1 23 801 823 801 823 0.98 3 7 2.1e-06 0.00019 21.9 0.3 2 23 832 853 832 853 0.98 4 7 0.00023 0.021 15.5 1.6 3 23 861 882 859 882 0.95 5 7 2.5e-06 0.00022 21.7 0.8 1 23 888 910 888 910 0.98 6 7 8.5e-05 0.0077 16.9 7.7 1 23 916 938 916 938 0.98 7 7 0.0001 0.0095 16.6 1.5 1 21 944 964 944 965 0.95
Sequence Information
- Coding Sequence
- ATGATGGGAGAAGTGATAAGAGTATCGGGACGAGCTCCGGACGTCGGTGACCTGCTCAGAGAGGCCATGTTGTCACAGCGTTTCGCCGACGTAGCACTCTGTTGTTCCGGCGGACAGAGATTTTTGGCACATCGTCTCGTTCTATCGGCAGCAAGTCCTTATCTACAGGATGTATTGTTGGCTCATGGTAAATCCACCAGTTACAGCGAGCCAATAACAATAATCCTGGCCGAGGTGGAGGGTCCGGAATTATCGGCTATTCTCGGTTATGTCTACACCGGAAGTGCGACGATACCGAAATCTCGTCTCGAAGCGTTCACTCGAGCCGCCGAGACGCTTCGCGTTAGAATACCACCCCTCGGTGACCAATCAACGCGTAACTACGAGGTATTATCGTTGAGGCACCGTAATCTCGAAGAAAACGATCCGAACCTCGATAACGTGAAGATCGAAGAAACCACAAACGACACGAGACACGTTCGTTGCGAGCAATATCCGTCTTACGACGGTTGGTTGGACTCCGCGAGTTGGCATTTTCACGGCGGTTGCGCGAAGCGTGATTATCAACGCGACGACTGGATAATCACGAGTAACGATCCTCTTTCACGAACGATACGCCGTACGAGCCAGGATATCGGTGAGAGTTATTCGAGATTTCATCGTACGTTCGTCGAGACGAAAAATGATATTCCCGAGAGTGAAAAGATCGCGTTTAACAATGAGAAACGGGAAATACTTAATTTTCACAATgataaaacgaagaaatattattttcatgaaaaacgcACGCTCGAGGGTGGTCCGTGGCGCGAGAACAATGccgtaaaaattaaattaaattctttcGTCGACACATCCGCGACTCGTCGTGACAATTGTTTCGACAATCGAAATAATGCTTTTCAAGCTCGAGTTCGTTCGGAAtcgcgaaattttttaaataacgatgacgaatcgaaaaattcattttccacgGTGGACAATTCCACGTTGAGGACGATGAGCGTCGAGTCTTGGCGAAGATACGAAACGAGAAGCGGTGCGAAAGTTCTTTGCGACAATGATTTCGAAGGTAGTCCAGAAACGAGTGAGAGTTTCGCGTCCACGTTGTTGTTACATCCGACGAGTGATCGTTCGAGCGTCAACTTCGAGAAACAGGATTATTACGATGATTCTTCGGCGAAAAATCGGCCCCCGAGTAACGTATTAACAACGGAAAGTTCCGTTAATAAAGTAATATCGGCAGCCTCGTCGACCGTCACCTCCGACTTGGCCACCGATCCCGTTGCCAATTCAACGACGACTCTACGGACGAAGGGCGATTTGTGCGGCGAAAGTTGCTGCGGGTGGAGAAGACCGAGAAGACACGTGGCTAATCGAGTACCCGCGTCACCTTGGTGCCAACTCGCTCGACCGGCCCACCATTCACCAAAAATACGACCCGTCATCCTTCGGAATCGGGACGACGGCATCGAGACTTCGTCCCGACCGCACTGGAACGAATCGGTTATTTCGGACGAAAGGGGTACGAGTTCATTTTCATCGACGATCTACGTCGACGATCACGCTGATAATCACGCTGATAATTCGTCGCCATTGCCGTTAAATCTTCGTGGCAATACGTGCAACGATTCGGCAGGATCGATTTACGGTTATCAAGTTCCCGAAACAACGGACGTTACTGGGACGAACGATCGAGAGATTGGTTACATCGAACGATCTGCCACTCCACATTTTTACGACGCTACGTcgtatgaaaaattatcattgtaTCGAACAACGACGATCTCAACCGTCGAACAACTTCCCTCAATTATCTCGTCCAATGAAATCGTTCCCGCAACGGAAAAATTCACTTCCAACGACGATCCTCCTCGTGATCAACAGCCTATTCGTCGTATCGACGAAATCTCAAATATCATCGTGAATGACGAACAATCGCGCGTCACCGGAGTTTCACAAGACGCGATCTCACCCAAGGCCATCGACAAACGAATAATCATCGATGATCCTTCGACGTGCAATCTCGAAAGAACATCGAGAATCGAACTTTCTCATCCGATAAGTAGACTGTGCGATACCGCGCGTATAAACGACGAAATAATCGCCCAAGACGAATTTTTAAACGATAAAAGTACCACCACGTCGTTGATGAGGTTCCCGATAACCGGTGGAATTGTTCAcagtgatgataataataacaatgagcTCGGTATAGACGATTCTGTCGTTGAAAATGtgcgaaaaattgatttgactTGGAACGAAGAAACTGAGAGAATTGCGGTGGAGGATGGCGTCGGTAGCAACGAGGAACACAGATGCGAACGGTGCGGCAAGACATTTGTCACTCGTGCCTCTCTCAAGGTACACGGACGGACGCATTCCGGTGAGAAGCCGTTTCGTTGCAACGACTGTGGCAAAGAGTTTTCTCAGCTACGCAACTACAAGTATCATCGTAGCGTGCACGAGGGTACTCGTGAATTTGCGGCGACGTGTCCCGAATGCGGCAAATACTTCAACGATCGTGGCTATCTGAGTTCTCACATGAAGATTCATCGTAATCGTAAGGAGTACGGCTGCAACGAGTGCGGCAAGAGTTTCAATCAGCGCGTCGCTTACAACATGCACCATCTTCGTACGCACTCGGGCGAGCGTCCTTATCGGTGTTCGATTTGTCAGAAAGCTTTTGCCGATAGATCGAACATGACGTTGCACACGAGATTGCATTCGGGTCTGAAGCCGTATCAGTGTACTCTCTGTACAAAAGCATTCACGAAGAAGCATCATCTCAAGACACATTTGAATTATCACACGGGTACAAAGCCATATTCGTGCCCAAATTGTTCGTTGAGATTTTCTCAAAGCAGCAACATGAGGACGcattacaaaaaatgttcgacCGGAATTAATCCATTGGTCCAGCGTCAAGGAGCATCGACGAATCGCGACAAAGATAATGATAATGGAAGAACGCCCACGAACGCCCTGACGCCACCAAATTCCGATCAAGAATCCAGTATTCGGACACCGTCGGCGATCAACGATCAGACATTGCGCTCAACGTCACGAATAATCACCGTGTGCCCCGGGAATGTCATCGATACGTGA
- Protein Sequence
- MMGEVIRVSGRAPDVGDLLREAMLSQRFADVALCCSGGQRFLAHRLVLSAASPYLQDVLLAHGKSTSYSEPITIILAEVEGPELSAILGYVYTGSATIPKSRLEAFTRAAETLRVRIPPLGDQSTRNYEVLSLRHRNLEENDPNLDNVKIEETTNDTRHVRCEQYPSYDGWLDSASWHFHGGCAKRDYQRDDWIITSNDPLSRTIRRTSQDIGESYSRFHRTFVETKNDIPESEKIAFNNEKREILNFHNDKTKKYYFHEKRTLEGGPWRENNAVKIKLNSFVDTSATRRDNCFDNRNNAFQARVRSESRNFLNNDDESKNSFSTVDNSTLRTMSVESWRRYETRSGAKVLCDNDFEGSPETSESFASTLLLHPTSDRSSVNFEKQDYYDDSSAKNRPPSNVLTTESSVNKVISAASSTVTSDLATDPVANSTTTLRTKGDLCGESCCGWRRPRRHVANRVPASPWCQLARPAHHSPKIRPVILRNRDDGIETSSRPHWNESVISDERGTSSFSSTIYVDDHADNHADNSSPLPLNLRGNTCNDSAGSIYGYQVPETTDVTGTNDREIGYIERSATPHFYDATSYEKLSLYRTTTISTVEQLPSIISSNEIVPATEKFTSNDDPPRDQQPIRRIDEISNIIVNDEQSRVTGVSQDAISPKAIDKRIIIDDPSTCNLERTSRIELSHPISRLCDTARINDEIIAQDEFLNDKSTTTSLMRFPITGGIVHSDDNNNNELGIDDSVVENVRKIDLTWNEETERIAVEDGVGSNEEHRCERCGKTFVTRASLKVHGRTHSGEKPFRCNDCGKEFSQLRNYKYHRSVHEGTREFAATCPECGKYFNDRGYLSSHMKIHRNRKEYGCNECGKSFNQRVAYNMHHLRTHSGERPYRCSICQKAFADRSNMTLHTRLHSGLKPYQCTLCTKAFTKKHHLKTHLNYHTGTKPYSCPNCSLRFSQSSNMRTHYKKCSTGINPLVQRQGASTNRDKDNDNGRTPTNALTPPNSDQESSIRTPSAINDQTLRSTSRIITVCPGNVIDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01129488;
- 90% Identity
- iTF_01129488;
- 80% Identity
- iTF_01129488;