Oarm018346.1
Basic Information
- Insect
- Oxytorus armatus
- Gene Symbol
- znf423
- Assembly
- GCA_958009045.1
- Location
- OY253756.1:5444930-5473391[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 9.1e-06 0.00082 19.9 1.5 1 23 97 119 97 119 0.98 2 22 0.22 20 6.1 4.9 1 23 125 147 125 147 0.98 3 22 1.2e-06 0.00011 22.7 4.1 1 23 153 175 153 175 0.99 4 22 0.00024 0.022 15.4 0.2 1 23 181 203 181 203 0.99 5 22 3.4 3.1e+02 2.4 0.4 3 23 278 300 276 300 0.83 6 22 0.0042 0.38 11.5 0.2 1 23 363 386 363 386 0.96 7 22 0.07 6.3 7.7 0.1 2 23 397 419 396 419 0.89 8 22 0.22 20 6.1 0.1 3 23 490 510 489 510 0.97 9 22 0.00038 0.035 14.8 0.1 2 23 525 546 525 546 0.96 10 22 0.0017 0.15 12.8 0.5 1 23 555 578 555 578 0.93 11 22 2.5 2.3e+02 2.8 0.1 1 23 583 606 583 606 0.91 12 22 2.5 2.3e+02 2.8 0.3 1 14 613 626 613 627 0.88 13 22 0.41 37 5.2 1.9 2 23 679 700 679 700 0.96 14 22 0.00051 0.046 14.4 0.0 1 23 705 728 705 728 0.95 15 22 5.2 4.7e+02 1.8 0.2 3 23 798 820 797 820 0.83 16 22 0.0018 0.16 12.7 1.0 2 23 836 858 835 858 0.96 17 22 1.3 1.1e+02 3.7 0.7 1 12 867 878 867 890 0.76 18 22 3.7 3.3e+02 2.3 0.1 2 23 898 919 897 919 0.95 19 22 0.0014 0.13 13.0 0.2 2 23 1105 1127 1105 1127 0.96 20 22 0.052 4.7 8.1 0.4 1 23 1137 1160 1137 1160 0.96 21 22 0.017 1.5 9.6 0.1 2 23 1203 1225 1202 1225 0.94 22 22 0.02 1.8 9.4 1.1 1 23 1232 1255 1232 1255 0.95
Sequence Information
- Coding Sequence
- ATGCTGTTCAAAGGCAATAGTTCACGATTGGAATTGCTGATCGGCAAGATTCAGGCGCACAAGGGTTCACCCTCACCACCGAGACCCGACAAATGTGGTCCAAGATCGAAAGATGCATTGGGAACCGGTAGCTCGTCGTGGCACAGCGAGGATGGCGGAACAAATTCGCGACGGGGCGTTGAAACCCCGTCGTCGTGCGCAACGCCAACGTCAGCGAGTTTTCCATCGGAACCGGAAGTCGAGAATGAAGTTGGTGTTAATGCCGATGGAAATAATCCGGCGGCCCCTTATCCCTGCCAATTTTGCGACAGAACATTTCCACGACTCAGCTACTTGAAGAAACACGAGCAGAGTCACGGCGATCAAATGCCGTATCGTTGCAGTTGGTGCTCGCGGCTATTCAAGCACAAGCGTAGCAGAGATCGTCACGTGAAGCTTCACACCGGTGACAGAAGATATCGATGCTCTCATTGCGAGGCCGCATTCTCTAGAAGTGATCATCTGAAGATTCACATGAAAACCCACGACAACCAGAAACCCTATCAGTGTACAGCGTGTTCGCGTGGTTACAACACAGCGGCGGCATTGACATCGCACATGCAATCGCACAAGAAGCATCCGAGTCCGAATCAATCGACAAAATTGGACATAGATTACGGACGTCGTAGCGTGTCATCGCACAGTACATCCTCGCCGCCGATCCAAAATTCCCCATCACCGCGATCGAATCCCGGTGTTTACGTGAAAAATTCGTCAAAGTGTCAGCGATCGATCTACGAAAACAGCAATCCACCAAAAGCGCCGCTTCTAAGTTCGCCATTGAAGCTCGCTTGTATGTACTGCACGAAGGATTCGTTCACGAGTATGCAACAATTGCAGCTGCACGTTCGCGCGATGCATCAGGCAATTCTCAATGGCGAGAGTATTCGCGGAGAATCCGCGGAACGAACGAAGCCAGAAGGGATGAATTCGATGTGTCGCGAACGTGAGATCGAGGAGAGAAGGAGCGCGAATGATTACGAGAGAGGATGTCATCGTGAGAGACGGGAAATGTCCGTGGAACGGGAGAAATTGTTGGACAATGATTTTTCGTGCGGTCAGTGTACAATGAAGTTTGGAAATGTCAGCGAGCTGCGTGATCATCTGGtgacgattcatcgaaatgaGGGTTTCGGTGGGACACTGATGATGTGTCCATTGTGCGGGATTCCCTGCTCTACCGCTGCCTCTTACGCCGAGCATTACGTGCTCAAACATTGCGAGAATGGTCGTGAAACGACGAAGGATACGGCGAATCGCGTCGATTGGACGGCATCAAAGACGAACGTTAGTCGCGAAGACAGTAGGTCCAATTCGAATGATCATTCGGCTGGAATTAGATCGGATCTCGTGACGTCGGAGCCCGCTGATCTAACGAAGAAACACTCGCTACCCATTGACACTGGTTACACAACGGGCACATTGCTCTGCGGTCAGTGTGGCGCTGCTCTCAAGGATTTCGAATCATTTCGCGAACATCTAGCTCGTCATTTACAGGCTGATCAGCAGAGCAGCGAGGTGTCGACGAGACGCTCGTGTCCAAAGTGCGGAACGAATTTTGCCGACAGCGAGGACATGCTCGCTCATCTGACGAAACATTACATCGGTCAAGTGACCAAGGAATATACGTGCGTggcttgtaaaaaattttatccaCATCCCGATCTGTTGCAACGACATTTGCTCGACGCTCACGCCCATCATCTCTATCGTTGTGCCGTTTGTCGGGATACCTTTGACTCGCGCGTCGCCATACAGGTTCATTTTGCCGTTAAACATAGTCAAGAGTGTCAGATTTATCGTTGCAACGTGTGCAACGTTACGAGCAACGATAATTCGTCGGATGGCTCGACGAACGAGGGAAAAAATTACTTTCGGAGCGAGGCGGAAATGGCTAATCATGTTAGAACGATTCACGCGCCGTCGATGATGTCGAACGAGAGCCCAGTGCGGAGAAGTCCCGCTCCGACACCGGTTGCCAATCCAATTGCTGCCAGATGCGTTTTTTGTGGTATCTGTTGCAACACCGATTTGGAACTGCAGATTCATCTGGCGAGTCACTCGACGAGTCTCTATCGATGTCCAATTTGTAGGGAAGGATTCCCGGTGGAATTTCTGTTGGAGAGACACATGGCTCAAGCGCATCGTCCCAATGGCGAGCGCAATGATTCGAGGGATAATGGAAGGATTTACAGGGCGTCCAGGTCGCAGGATGATACAACGAGATCACAAAAACGCGGACGATCACCTGCCTCGAGCAATAACAATTCGTTGAATCAAcgtgacaacaacaacaaacgaTTGAATTACGGTGGTACAAATGGCACAACGGTCAAAACGGTCGTTCAACATTGCGAATTGTGCGAGAGAGCGGAATTCGCGTCGGAAGCGGAACTTCAGGCGCACAAAAAATTGGTTCACACACCGACGAAACTGCAGAGCAAGTCATTGACGTTGCTCAGCATGACGTGCGCCTATTGCGGCGATGTCTGTCGTTCGCGTAGCGATTTAGAGTCGCACACGAGAATTCAGCACGCCGCGAACGAGCCCGGTGGACGACACAAGTGTAACATTTGCGACGAGGTCTGTCCGTCCGGTGGAATTCTCGCGGAGCACAAACTACAGAAACATTGTAAAATACAATTGAGCGATACTTGCGTCGTTTGTCGCGGTAATCTGACGACCGAGGCGCAATTTATCGAGCACGTGCAGCGTCACAGTCACGAGTGCGGCGAGACGCAGCAGCAACGATTGGACAACGGTCCACCAATACTACCGGCCGCTTGCGTCGTTTGTCGACAAACACTGATCACCGATCTTGAATGTCGTCTTCACGCGTCTCATCATCTTCGTGGCACGAACGACACGCACGTATCCAACGCCGCGCCGAGTCCGACGCGACAAACGgttcagcagcagcagcagcagcaacaaactcttcgacaaGCATCGCTTAGCTGCTGTTTGTGCCTGCGGGAATTTAGCGCTGATGATTTTGTCAGTTTGCCGGCGAATCCCGTGGGAACCGCCGGTACAGCTTTGAAAGTCTGTAAACCGTGTTACGTGAGACACTCGCAAGGATTACCGATACTCAGTTCGCCTTACGAACACGTCAGACCCGCGAAGAGCGAACGAGCCGGTTGGAGCAATGACAGAGACACGAGCAACAGAGAAACCTCGAGCGAACGATGGGACAATGAGAGAACGTATAACGGCGATGAACGCGATGGAAGTCAAAGGGTTAAGAGAGCATTGAGGGAGCGAGATGATAACAGATGCGACGATTGTGGCGTCAAGTTCGAAAATTCTGACGATGCCGAGAATCACAGGAACAAGGAACACGGTACGAGTCGAGGAAGCGCCAACACTTATACGTGCATACAATGCCAGATGTCTTTTCCAACCGAGGAAACAATTCGTCAACACGTGAGAAAGGTTCACTTGGAATCATCGAACAAATCGTCGATGGACGCGCTCCGCTGTCATCTTTGTGCGTTCGAAGCTAACAGTCCTCTTCAACTACAAGGACATCTTATAGAACATACTTTCGCCGGTTGCGCCGGTCTCACTTGTTACATCTGCCAGGGTCTCTTCACAACACCTATTGCGCTTCAGAATCATATGCTACAGCAGCATGGACTCGGCGCAAGGCCCTATGACTGCAGTTATtgcggtttaaaatttttcttccgcATCGAGCTTGATCATCACGTGGTGACGATACATCGTAGAAATGAAATATCGTCGCCCGGCTTTGAGGTGGGACAGGAGAACGGAATGGAAAAACGTAATGCGACACAGGTGAGCGAGGAGCCTTACGAGGCGAACTCTTGTTCCAGGAGTGTAACGGTGAAAGAAGAGATTGTTAATAGTCCCGAGGATAAAGATATTAACGTGGACGATAATGTTGAACATAATGACGAATTAGAGACAAAATTTGAGGAGCAACATTTGTTAGAAgcgaaaaaagaatcgttttcaTTGCAGCATGGAGAGGAGAAAATTCAGTCTTGA
- Protein Sequence
- MLFKGNSSRLELLIGKIQAHKGSPSPPRPDKCGPRSKDALGTGSSSWHSEDGGTNSRRGVETPSSCATPTSASFPSEPEVENEVGVNADGNNPAAPYPCQFCDRTFPRLSYLKKHEQSHGDQMPYRCSWCSRLFKHKRSRDRHVKLHTGDRRYRCSHCEAAFSRSDHLKIHMKTHDNQKPYQCTACSRGYNTAAALTSHMQSHKKHPSPNQSTKLDIDYGRRSVSSHSTSSPPIQNSPSPRSNPGVYVKNSSKCQRSIYENSNPPKAPLLSSPLKLACMYCTKDSFTSMQQLQLHVRAMHQAILNGESIRGESAERTKPEGMNSMCREREIEERRSANDYERGCHRERREMSVEREKLLDNDFSCGQCTMKFGNVSELRDHLVTIHRNEGFGGTLMMCPLCGIPCSTAASYAEHYVLKHCENGRETTKDTANRVDWTASKTNVSREDSRSNSNDHSAGIRSDLVTSEPADLTKKHSLPIDTGYTTGTLLCGQCGAALKDFESFREHLARHLQADQQSSEVSTRRSCPKCGTNFADSEDMLAHLTKHYIGQVTKEYTCVACKKFYPHPDLLQRHLLDAHAHHLYRCAVCRDTFDSRVAIQVHFAVKHSQECQIYRCNVCNVTSNDNSSDGSTNEGKNYFRSEAEMANHVRTIHAPSMMSNESPVRRSPAPTPVANPIAARCVFCGICCNTDLELQIHLASHSTSLYRCPICREGFPVEFLLERHMAQAHRPNGERNDSRDNGRIYRASRSQDDTTRSQKRGRSPASSNNNSLNQRDNNNKRLNYGGTNGTTVKTVVQHCELCERAEFASEAELQAHKKLVHTPTKLQSKSLTLLSMTCAYCGDVCRSRSDLESHTRIQHAANEPGGRHKCNICDEVCPSGGILAEHKLQKHCKIQLSDTCVVCRGNLTTEAQFIEHVQRHSHECGETQQQRLDNGPPILPAACVVCRQTLITDLECRLHASHHLRGTNDTHVSNAAPSPTRQTVQQQQQQQQTLRQASLSCCLCLREFSADDFVSLPANPVGTAGTALKVCKPCYVRHSQGLPILSSPYEHVRPAKSERAGWSNDRDTSNRETSSERWDNERTYNGDERDGSQRVKRALRERDDNRCDDCGVKFENSDDAENHRNKEHGTSRGSANTYTCIQCQMSFPTEETIRQHVRKVHLESSNKSSMDALRCHLCAFEANSPLQLQGHLIEHTFAGCAGLTCYICQGLFTTPIALQNHMLQQHGLGARPYDCSYCGLKFFFRIELDHHVVTIHRRNEISSPGFEVGQENGMEKRNATQVSEEPYEANSCSRSVTVKEEIVNSPEDKDINVDDNVEHNDELETKFEEQHLLEAKKESFSLQHGEEKIQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -