Oarm000302.1
Basic Information
- Insect
- Oxytorus armatus
- Gene Symbol
- -
- Assembly
- GCA_958009045.1
- Location
- OY253744.1:4136455-4140681[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.71 64 4.5 3.1 2 23 224 246 223 246 0.95 2 20 0.21 19 6.2 4.7 1 23 328 350 328 350 0.97 3 20 0.0047 0.43 11.4 0.8 1 23 399 421 399 421 0.98 4 20 0.025 2.3 9.1 0.5 1 20 485 504 485 506 0.92 5 20 4.3 3.9e+02 2.0 1.7 1 10 518 527 518 541 0.84 6 20 0.13 11 6.9 0.8 2 23 547 568 546 568 0.96 7 20 0.034 3.1 8.7 1.8 1 23 622 646 622 646 0.94 8 20 0.0053 0.48 11.2 0.6 1 23 652 674 652 674 0.98 9 20 2.8e-07 2.5e-05 24.7 0.3 2 23 717 739 716 739 0.97 10 20 0.013 1.2 10.0 0.6 1 23 745 768 745 768 0.95 11 20 0.0011 0.097 13.4 0.0 3 23 777 798 775 798 0.96 12 20 0.00018 0.017 15.8 0.6 3 23 808 828 806 828 0.92 13 20 0.079 7.1 7.5 0.1 2 20 901 919 900 919 0.95 14 20 0.033 3 8.7 0.0 2 23 939 960 938 960 0.95 15 20 4.3e-05 0.0039 17.8 1.5 2 23 977 998 977 998 0.98 16 20 0.00041 0.038 14.7 0.4 1 23 1024 1047 1024 1047 0.95 17 20 0.27 25 5.8 0.6 2 23 1162 1184 1161 1184 0.92 18 20 0.2 18 6.2 0.7 1 23 1199 1223 1199 1223 0.96 19 20 0.1 9.4 7.1 0.0 1 23 1228 1251 1228 1251 0.98 20 20 0.00049 0.044 14.5 0.1 2 23 1282 1304 1282 1304 0.96
Sequence Information
- Coding Sequence
- atggatgAGATTGTGGATGTAAGAAATGTGGGAAACGTGTGCAGATTGTGTCTTTCCACGGAGGAACCAAAATCATCGGTATTCGCCGATGATCCATTCGCCACGGTCTCGTTAGCGACGAAAATACAAACTTGTTTGTCCATTGAGGTACTGATCGGCGACAAGGTATCGACACTGATATGCGCCAACTGTCTGAGAAGGGTGAACAAATGGCACGCGTACAAGGAATACTGTTTCCGTTCTCAACAAAAGCTGCTCCAATGTCTCGGCGATCGATCGGACAACGGAATAAGTAATATCAAAGCGGAACCGATGGATTTTAGCGAACCGACGAGTCCGCTGGCGCCGTTGACCTCGGAGGACGATCACCAAAGTATAACGGAGAGACGCGACGAATCGGCCGGACCAATTGTTTCGACGGATGCGTCAGCGATAAAGAGAGAAGCGGCGAACGACGCGGAAAATCACAACACCACCGTCGAATTGGAATCTGTCTGTAGCGCGGAACTCCTGTTGAATCCGATGGCGGTGGTCGGACACAAAGAGGACAGACCGACGGAAGTGGTATCGACGAAAAGATCCAGGAGCGTCGATACGCCGGgaggcataaaaaaaaaagtacgacgcGGCCCGCACACTCACTATCGAGGCTTGCGCCAGTACAAACAGAGATGCTCCTACTGTCAGATATATCTGCACTCCAAGAGCAGTTACGCCAGGCACACGGAACGATTTCACAGCGGCAAGATTTACGCGAGGAAGATGAGAGGCCCCGCCGCTGCGTCAGCGAGAGCGGGAAACAAGCAAACATTGGAcgacaagaggaagaagaagaaaatgggGGGTAAGTTTGTTAACGCGAAAGAGGAGGGCGATATGACGATGGAAATGATCGAGGACGTGGAGGACGAGTTGATAAGCCTCGAGAAGGACGCACCGCTCACGCCCGTACAGCAAAATATAATAAGCCAGCTGAAAACGTTCTCGTGTTACTCGTGTCGCGAGTGCTTCAACGATCGTCGCAGTACCCTCAATCACATACGCCAGCACATGCCCGATCTTAGACCGTACACGTGTATCGCCTGTCTGACCGAATTCGCCGATCGTTCGATCTACAAATTGCACTGCGGCGCCTCGTTTCAGTGCGCGATGAAGATAGCCCTCGTCGTTCCCGAACACGGCACGGAAAAATATTTCACGTGCAACATGTGCCTGAGATCGTTGCCCAACAGAAAAGAATTGCTCAGTCATTTATCGAGACATTCCGACAAGCAGTACGAGCAACTTATCGCCGGACCATTTCGCTCTCCGCCGAAGCTCAAGCCTATCGCCCCTCTTTCCGCCTCATCGCCGTCCTCGACGAAGCAGCATCGAAAAAATCCGTCGAATTTCGCGCACGAACGTTATCGTAAAATTCCCGGACCATACAAGAACGGCGATCCCGCTCACAATCACGCGTGCGCTCATTGCGGTATGATCTACCGATACAAACAAAATATGTTGAAGCACGTGTCGTTGTGCAAGAAATTGCCGTCCGACGGTCGTATATGCTACAAATGCGTAAACTGCGGCATGACGTTTCTCGCTTTCAACAAATTTCACACTCACGTTAGTCACGAGCACAAGAGGAAGGATCTCGTCTGTTATCGTTGCGACTCGAAATACAAACGTGTCGatgattttttgtcacattATCGGGAACATTGCGCCGAGAGTATACGCGAGGTCGTTGATACGACGGGACAGACGACGGATGGAGCCGCTCATCGTGACACGGAACGATCGCACAAAGTTGAACGTTGGAAGAGCAACGTCGACGAATGGAACGAGGATTACGTTGTCGTTGGTACGGGAAAAACGAGGTACAGCTGTGCGCTCTGTCCAAACAGGTCTTTCCCAACGAAAAATCATCTTACCGAGCACAAAAAATTGAATCATCCAAAGGTGACGATATACACATGTTCGGTTTGTCGTTGCAGCTTTGGCAAATCCTCGATCCTTGAGGCTCACATGGCCGTTCACGCGACCGTTTCAGCGACCGTTTCCGCGAACGTTTCCGCGATTGAAAGCGAGAAAGGTACGAGAATCGCGGCGAAAGGGAACAACGCTCGGCTATCAATAAAATCAGATCCCGGTGCGAGCAATACCGAGTGTCAAACGTGCGGCAAAGTATTTGCAAATTATCCGAATTTACGACGTCACATACGCACGGTGCACGACGCGATTGGACGTTTTAGCTGTTTCACGTGCGCCAAGACATTCGTGCGCGAGCAACAGTGGACCGAGCACGTCGAGAAGGAGCACAAGCATGCCGAGCGTACGGTCAATTGTCCACAGTGTCCGGAGGTATTTGAGAGCCGTGAAGCGGTTAACGTTCATCGTCGTAGTATTCACGGATCGAACGGTGAGGATCATCTCGCGTGTTACATATGCGGCAAGAGTTTCGCCAACGAAACGTCCCTGAAGATTCATCGTGGTCATCACTTTCGCGTTAATTCGCGTCTGAGCCTCGGCAATGTTCGCGGGCCGTTACGAGATAATGGCGCGACAGCGGGAACGCTCGAACGGGAGCGTCATGACGCTCAACTGCCGAGCGAACAGCGGACCCTGATTCAGCCCGTGAAGTCGCCGAGAGCGAGAAAATCGTTTCCGAACGGAATCACCGGCGTTGGCCAATCGCAGTCGGCCGGTGGAACGCTCCAGTGTCAGGTGTGCGACGATCGTTTCAACGATGTCGCGGAACTTCGAAAACACCTGTGGGACGTACATTGCGCCCGTAACAAGCCCGAAAAGCCTTTTATATCCGATAAATTGCAGTGCGAATTATGCACGAATGTATTCCCCGACGAGGAGAGTCTCGCGAGTCACGGGAAATGGCACGAGAGCAATCCGATACTGAGCGAGAGGCGCGAGACGCGAGCTCCCGCGCAGTGCGACCTGTGCGGAAAGTTTTACAGCTCGGTCGCCAATCTTCGAAAGCACAAGAAACGCCACAAAGTCGGAGGCTTGGTCGTTAACAGAGTCCAGACGGTCGgtaagaggaagaagaaatcgTCGATCGGCAATGGATTCACGTGCAACGTTTGCCGCAAAGTATTTGCGGAAAGATCGACGATGATGAAGCACAAAGCGGTCGCTCATCCGCCCCAaccgtcgtcttcgtcgtcgtcgtcgtcgtcatcgccgTCGATACGTCAGGCCGGTAATTCGAATAGCGGTCGTGAAACGATCGTCGAACCGGAAGTTATAAAGCCCGTTCGGCCCAAGCTCGACTTTGACACGCTGACGAGTCGCGACGCTTTCTCGGGGAGCGGCGATGGTAAAAAATCTCCCGCTCGTGATCTCTGCCGGAAAGCGATACCCGACGTTCGAGCCCTTTACAAACATCGTCGGCTCGTCGACAAAATAACCAACGAAACAACCGACTCGAGGAGTAATTTCGATTTGGCCACCGTCAACGATTCGATCGTTGTTAATCGAGTCTCGTGCACCGCCTGTTCGAAATTATTCAGTAACGTCGCAAATATGAGACAACACTTTACGAAGGTTCACGGAACCGGCTCGACCGGCCCTGGTAATCATCGATCGTCGCAGTATAGATGCTCGGTCGACGCTTGCAAGCTCACTTTCAAGACCCTCGTTGCCAAGCAGAATCACGAAAAAACTCACATTAACGTGATGTATACGTGCGCTCTTTGTCCGCGTCATATGATTAATCCTGGCGCAATGGCCGAGCACATGCTTACCGCTCACAAAACTCATTATCCCGGGATCACCAATGAGATGACGCTCTGTAAGAAAATTGATCTTGATAATTACGTCGTTAGAGGAGCCAACGGACGACAGTGTCCCGTGTGTAAAATCACCTATCCGAATAACAAGGCTCTCAAAGTCCACTATCTCAAGGTCCACGACGGCGTCGCTTAG
- Protein Sequence
- MDEIVDVRNVGNVCRLCLSTEEPKSSVFADDPFATVSLATKIQTCLSIEVLIGDKVSTLICANCLRRVNKWHAYKEYCFRSQQKLLQCLGDRSDNGISNIKAEPMDFSEPTSPLAPLTSEDDHQSITERRDESAGPIVSTDASAIKREAANDAENHNTTVELESVCSAELLLNPMAVVGHKEDRPTEVVSTKRSRSVDTPGGIKKKVRRGPHTHYRGLRQYKQRCSYCQIYLHSKSSYARHTERFHSGKIYARKMRGPAAASARAGNKQTLDDKRKKKKMGGKFVNAKEEGDMTMEMIEDVEDELISLEKDAPLTPVQQNIISQLKTFSCYSCRECFNDRRSTLNHIRQHMPDLRPYTCIACLTEFADRSIYKLHCGASFQCAMKIALVVPEHGTEKYFTCNMCLRSLPNRKELLSHLSRHSDKQYEQLIAGPFRSPPKLKPIAPLSASSPSSTKQHRKNPSNFAHERYRKIPGPYKNGDPAHNHACAHCGMIYRYKQNMLKHVSLCKKLPSDGRICYKCVNCGMTFLAFNKFHTHVSHEHKRKDLVCYRCDSKYKRVDDFLSHYREHCAESIREVVDTTGQTTDGAAHRDTERSHKVERWKSNVDEWNEDYVVVGTGKTRYSCALCPNRSFPTKNHLTEHKKLNHPKVTIYTCSVCRCSFGKSSILEAHMAVHATVSATVSANVSAIESEKGTRIAAKGNNARLSIKSDPGASNTECQTCGKVFANYPNLRRHIRTVHDAIGRFSCFTCAKTFVREQQWTEHVEKEHKHAERTVNCPQCPEVFESREAVNVHRRSIHGSNGEDHLACYICGKSFANETSLKIHRGHHFRVNSRLSLGNVRGPLRDNGATAGTLERERHDAQLPSEQRTLIQPVKSPRARKSFPNGITGVGQSQSAGGTLQCQVCDDRFNDVAELRKHLWDVHCARNKPEKPFISDKLQCELCTNVFPDEESLASHGKWHESNPILSERRETRAPAQCDLCGKFYSSVANLRKHKKRHKVGGLVVNRVQTVGKRKKKSSIGNGFTCNVCRKVFAERSTMMKHKAVAHPPQPSSSSSSSSSSPSIRQAGNSNSGRETIVEPEVIKPVRPKLDFDTLTSRDAFSGSGDGKKSPARDLCRKAIPDVRALYKHRRLVDKITNETTDSRSNFDLATVNDSIVVNRVSCTACSKLFSNVANMRQHFTKVHGTGSTGPGNHRSSQYRCSVDACKLTFKTLVAKQNHEKTHINVMYTCALCPRHMINPGAMAEHMLTAHKTHYPGITNEMTLCKKIDLDNYVVRGANGRQCPVCKITYPNNKALKVHYLKVHDGVA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -