Oarm016872.1
Basic Information
- Insect
- Oxytorus armatus
- Gene Symbol
- -
- Assembly
- GCA_958009045.1
- Location
- OY253754.1:16623283-16633372[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.039 3.6 8.5 0.3 3 21 8 27 6 28 0.85 2 14 8.2 7.4e+02 1.2 0.0 2 20 34 52 33 53 0.90 3 14 0.79 71 4.4 0.2 1 12 217 228 217 237 0.88 4 14 0.013 1.2 10.0 1.3 1 23 422 444 422 444 0.98 5 14 0.00098 0.089 13.5 0.1 2 23 448 469 447 469 0.97 6 14 0.00012 0.011 16.3 3.0 1 23 481 503 481 503 0.98 7 14 0.021 1.9 9.3 0.3 1 23 522 543 522 543 0.95 8 14 0.00089 0.08 13.6 0.0 2 23 549 570 548 570 0.95 9 14 5.4e-05 0.0049 17.5 4.8 1 23 624 646 624 646 0.99 10 14 2.3e-06 0.00021 21.8 3.7 1 23 652 674 652 674 0.96 11 14 0.00027 0.025 15.3 4.1 1 23 680 702 680 702 0.97 12 14 1.6e-06 0.00015 22.3 0.8 1 23 708 730 708 730 0.98 13 14 6.9e-05 0.0062 17.1 0.3 1 23 734 756 734 756 0.99 14 14 0.00045 0.04 14.6 0.2 1 23 764 786 764 786 0.97
Sequence Information
- Coding Sequence
- ATGGGTTCTATGAGCCTTGTTTGTCCCATGTGCTGCGGCGAGACATTCGATAACTCTCAGTCGCTCAAATACCATTTGCTGAGTATGACCGACAATCTCTACTGTCCGAACTGTGCCGAACGCTCGGATTCCGTCGCCGCGCTCATTCAGCATCTGGATTGTTGTGGCCTGAGTCCTGAACCGATCAAGCTGCACGCTGTAAGAGACAGCAAGAGTGTCGCCGTTGATGCCCTGGCGGAGACAGTGTGTCGCAACTTATTGGCTACTATAGGCGAAGACGGTATCGTGATAGTTCAAGATCCTCGAGACACCGGCGGGACCAAGGAGCACGGTATCGAAGTGGTAAAGATGAAGATGGACATTGACGAGGATAATGTTGATCGCGACGGTACTTTGGAGCATCTCGGTCAGAGGGAGGTTGGGGATGAAGACAAACGTGGGGAGGAACATGAGAGGTGTATCAAAGACGAAAAGAACACTTCCGCGATTGTCGATGAGGAAACGGAAATTCTTGATcccgataaaaatttgaaagattcGAGTATCATGGGAATCGAGTCTTACGAAAATCGAGCAGAGGAGGAGCAGGACGAGGCGGGACTTGTCCAAGTAAAGGAGGAGTCAGGCGAGGTAGAATCGGATGCGCTGTACAGTTGCAGCAGCTGCGGTTTGAGTTTCAACAGCGTGCTGTCTCACATCAAAGAGTATCACGATGGACAAGAAGTGGTACTCGAAATGGCCGAACAGCAGATGGACGATTTGGCGGATGGATCCGAGGAGCAGGACCAGGAGGAGGAGCAACAGGAGGCAACGGAGGAGAATCCGGCAATGAATCTATCGCACATTGTCGAGGAAAGCGGTTTGAGCGTTGGCGGTTCGAACGGCACGGTCGAACGTTCATCCGGTGGTTTGCCGCGACAGCGTCAAACGATGAACACTCTGAGAACCGAGGAATGCGTCGACAGCGAAGGGCGTCTCTATACGAGAAAAGTCGTGCAGATCGAAAGATTTTGGGATCGAGGACCCGGAGCCGCTACCGGCGCCCAATCGCAATTGCAACAGCACCAGCACCAGCAATCCGCGAAAAGCGCTCCgatgattgaaaaatttttctcCAACGCGGAGGGCTTGAAAATTCGAACCAAAAGTCCCATGACGATAACGGCAGCTATGGCTACTACAACGATCACATCGACAACGACGACCCCCAACACCAACACCAACACCACCTCTTCCTCGCACGGTAGCGCCCCACTTAGAATGTACAGATGCAACAAGTGCCTCGAACAATTTGCCAAGCTCGCGGATTTTCGCGTTCACGCCTGTATTCACGGTAACAATCAGTGTGATCTGTGCGAACAAGCTTTCGCGAGCGCCAAAGCGTTACAGTTACATTCGCGAATTCACGAGGTCGAAGTCGAGGGAGGAAGTGACAGTAACTTTGTCTGTCAAACGTGCGGCACCGAATTCTCGTCGCACAAGAGCCTCAGATTGCATTCCAGAATGCACGCACCGGTAAGAGCGAGACACGTCGATGCGCCTGAGGGAACTGCCAACGAGAATTTCACGTGTCTCGAATGCGGAAAAACGCTATCGGAATCGTATAGAAAGGCCCACATGGCATTGCACAAGGGAGACTCGGTAACCTGTTCAGTTTGCAATAGAAAATTTGATTCGGCCGATAGCCTTGCGATGCACGCTGCGGTACACATAGAGTTTACACAATCACAGAAGTATAAACAAGCGCCACTGCTGTCGCTGGACGAACAGAGGATAGGGAATGAATCAAATGTAGACGGCGTTAAGCGTTTTAGAGGAGGAAAGACCGGAGACAAAAGGACCGAAGGTGGCGATGCTCAAGAAAAACCGTACCAGTGTCAGCACTGCGGAAGAAGATTCACGAGACCCCACGAAAAGGTGAAACACGAGAGAATACACACGGGCGAGAAGCCTCATGCTTGCGAGGTATGCGGAAAAACTTTCCGCGTCTCTTACTGTCTGACTCTCCACATGAGAACTCACACGGGAGTTCGTCCGTACGCGTGTCAGCATTGCGGCAAAAGGTTCAAGGCGTCCTCTGTGTACAATCATCATCTTTTAACGCACGGCGAGGAGCGAGCGTACACGTGTCCCTACTGTCCCAAGACCTTCAAAACTCGAGTACAATTAGCTGGTCACAAAAACAGTCACACGAAGCCCTTTCGTTGCACCGAGTGTTCGCGACCGTTTGCTTCTTTGTACTCGGCGCGCGCACACATTCAGACTCACAAGAAGGACAACAATTTAAAATTCAGCTGTTACATATGCGGCGCCTCATACGGGCGAGCGTTCGCTCTCAAAGATCATCTAAAACAGCACGCGGGACAGGTCCCTCTTGTTCCACCGCCGGAAGCCGCTCGCGAGGAAGAGGTCGCCGACGCCGATGATTTTATCGTCACCGAGACCGAGGAGTACGAGGAGATCGAGGAGATCGAAGAAAttgacgaggaggaggaggaggaggaggaagaggagcaGGAAGAGCACCGACTCGTAGCGGTTGCCGCTGCAGCGGCCGCACACGCCCAAGACGATTCTCATCGTTTAAACGTCGTCGATGGTCATAATCGGTCCGAATGA
- Protein Sequence
- MGSMSLVCPMCCGETFDNSQSLKYHLLSMTDNLYCPNCAERSDSVAALIQHLDCCGLSPEPIKLHAVRDSKSVAVDALAETVCRNLLATIGEDGIVIVQDPRDTGGTKEHGIEVVKMKMDIDEDNVDRDGTLEHLGQREVGDEDKRGEEHERCIKDEKNTSAIVDEETEILDPDKNLKDSSIMGIESYENRAEEEQDEAGLVQVKEESGEVESDALYSCSSCGLSFNSVLSHIKEYHDGQEVVLEMAEQQMDDLADGSEEQDQEEEQQEATEENPAMNLSHIVEESGLSVGGSNGTVERSSGGLPRQRQTMNTLRTEECVDSEGRLYTRKVVQIERFWDRGPGAATGAQSQLQQHQHQQSAKSAPMIEKFFSNAEGLKIRTKSPMTITAAMATTTITSTTTTPNTNTNTTSSSHGSAPLRMYRCNKCLEQFAKLADFRVHACIHGNNQCDLCEQAFASAKALQLHSRIHEVEVEGGSDSNFVCQTCGTEFSSHKSLRLHSRMHAPVRARHVDAPEGTANENFTCLECGKTLSESYRKAHMALHKGDSVTCSVCNRKFDSADSLAMHAAVHIEFTQSQKYKQAPLLSLDEQRIGNESNVDGVKRFRGGKTGDKRTEGGDAQEKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYACQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYSARAHIQTHKKDNNLKFSCYICGASYGRAFALKDHLKQHAGQVPLVPPPEAAREEEVADADDFIVTETEEYEEIEEIEEIDEEEEEEEEEEQEEHRLVAVAAAAAAHAQDDSHRLNVVDGHNRSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -